Multiplicon view: 345 (Experiment Id: 1)   top

The Multiplicon view displays the aligned gene strings of a set of homologous segments.

Multiplicon Information

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
345 20 33 16 90

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Gene Information

Gene Family Information

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Draw mode Segment ordering Species
Species Chromosome First Gene Last Gene
Ananas comosus LG04 Aco020969 Aco002056
Ananas comosus LG07 Aco004876 Aco004893
Ananas comosus LG15 Aco003843 Aco003831
Asparagus officinalis AsparagusV1_08 evm.TU.AsparagusV1_08.1375.V1.1 evm.TU.AsparagusV1_08.1335.V1.1
Brachypodium distachyon Bd1 Bradi1g08000 Bradi1g07890
Elaeis guineensis EG5.1_Chr1 p5.00_sc00118_p0021 p5.00_sc00372_p0008
Hordeum vulgare chr5H HORVU5Hr1G096780 HORVU5Hr1G097030
Miscanthus sinensis Chr01 Misin01G063800 Misin01G065800
Miscanthus sinensis Chr02 Misin02G061900 Misin02G060000
Oropetium thomaeum Oropetium_genomic_20141112_018 Oropetium_20150105_07630 Oropetium_20150105_07642
Oryza brachyantha 3 OB03G41800 OB03G41980
Oryza brachyantha 7 OB07G26570 OB07G26340
Oryza sativa ssp. indica Chr3 OsR498G0307080500.01 OsR498G0307085600.01
Oryza sativa ssp. japonica Chr3 LOC_Os03g55130 LOC_Os03g55290
Populus trichocarpa Chr04 Potri.004G032100 Potri.004G023100
Populus trichocarpa Chr17 Potri.017G042000 Potri.017G037900
Setaria italica scaffold_2 Seita.2G377300 Seita.2G374900
Setaria italica scaffold_9 Seita.9G085000 Seita.9G082500
Solanum lycopersicum SL2.50ch07 Solyc07g053210.2 Solyc07g052510.2
Sorghum bicolor Chr01 Sobic.001G083400 Sobic.001G081800
Sorghum bicolor Chr02 Sobic.002G363200 Sobic.002G360801
Spirodela polyrhiza pseudo2 Spipo2G0092200 Spipo2G0094800
Triticum aestivum chr5A TraesCS5A02G396400 TraesCS5A02G398500
Triticum aestivum chr5B TraesCS5B02G401300 TraesCS5B02G403500
Triticum aestivum chr5D TraesCS5D02G405900 TraesCS5D02G408000
Triticum turgidum chr5A TRITD5Av1G206030 TRITD5Av1G206750
Triticum turgidum chr5B TRITD5Bv1G202160 TRITD5Bv1G203020
Zea mays B73 1 Zm00001d034080 Zm00001d034108
Zea mays B73 1 Zm00001d030900 Zm00001d030834
Zea mays B73 5 Zm00001d013241 Zm00001d013222
Zea mays B73 7 Zm00001d022043 Zm00001d022009
Zea mays PH207 chr01 Zm00008a005243 Zm00008a005260
Zoysia japonica ssp. nagirizaki Zjn_sc00014.1 Zjn_sc00014.1.g04880.1.sm.mkhc Zjn_sc00014.1.g05010.1.am.mk

This multiplicon is a higher level multiplicon, indicating that it contains more segments than it's parental multiplicon.
To explore the parental multiplicon, view the multiplicon in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
344 19 32 9 69

This multiplicon is not redundant, but is the parent of one or more redundant multiplicons.
To explore these redundant reduced colinear regions, view the redundant multiplicon(s) in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
133411 2 2 13 48