Multiplicon view: 3436 (Experiment Id: 1)   top

The Multiplicon view displays the aligned gene strings of a set of homologous segments.

Multiplicon Information

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
3436 18 34 23 101

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Gene Information

Gene Family Information

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Draw mode Segment ordering Species
Species Chromosome First Gene Last Gene
Asparagus officinalis AsparagusV1_01 evm.TU.AsparagusV1_01.572.V1.1 evm.TU.AsparagusV1_01.617.V1.1
Brachypodium distachyon Bd1 Bradi1g43600 Bradi1g43840
Brachypodium distachyon Bd4 Bradi4g37267 Bradi4g37500
Cenchrus americanus chr7 Pgl_GLEAN_10030802 Pgl_GLEAN_10012999
Elaeis guineensis EG5.1_Chr16 p5.00_sc00017_p0006 p5.00_sc00017_p0035
Hordeum vulgare chr5H HORVU5Hr1G087690 HORVU5Hr1G088020
Miscanthus sinensis Chr03 Misin03G257700 Misin03G255200
Miscanthus sinensis Chr04 Misin04G272600 Misin04G274300
Miscanthus sinensis Chr19 Misin19G123300 Misin19G117200
Oropetium thomaeum Oropetium_genomic_20141112_007 Oropetium_20150105_06458 Oropetium_20150105_06441
Oryza brachyantha 6 OB06G19950 OB06G19430
Oryza brachyantha 9 OB09G25550 OB09G25750
Oryza sativa ssp. indica Chr9 OsR498G0917924800.01 OsR498G0917934600.01
Oryza sativa ssp. japonica Chr9 LOC_Os09g37949 LOC_Os09g38310
Saccharum spontaneum Chr2A Sspon.02G0008340-1A Sspon.02G0008240-1A
Saccharum spontaneum Chr2B Sspon.02G0036140-1B Sspon.02G0008250-2B
Setaria italica scaffold_2 Seita.2G300800 Seita.2G302700
Sorghum bicolor Chr02 Sobic.002G290400 Sobic.002G292300
Triticum aestivum chr5A TraesCS5A02G352900 TraesCS5A02G355600
Triticum aestivum chr5B TraesCS5B02G355100 TraesCS5B02G358100
Triticum aestivum chr5D TraesCS5D02G359900 TraesCS5D02G364000
Triticum aestivum chr6A TraesCS6A02G288200 TraesCS6A02G292200
Triticum aestivum chr6B TraesCS6B02G317700 TraesCS6B02G322600
Triticum aestivum chr6D TraesCS6D02G270800 TraesCS6D02G273400
Triticum turgidum chr5A TRITD5Av1G192200 TRITD5Av1G193070
Triticum turgidum chr5B TRITD5Bv1G184250 TRITD5Bv1G185190
Triticum turgidum chr6A TRITD6Av1G181070 TRITD6Av1G182750
Triticum turgidum chr7A TRITD7Av1G074400 TRITD7Av1G071940
Triticum turgidum chr7B TRITD7Bv1G049850 TRITD7Bv1G048190
Zea mays B73 2 Zm00001d006308 Zm00001d006315
Zea mays B73 7 Zm00001d021425 Zm00001d021411
Zea mays PH207 chr02 Zm00008a009338 Zm00008a009341
Zea mays PH207 chr07 Zm00008a028778 Zm00008a028763
Zoysia japonica ssp. nagirizaki Zjn_sc00041.1 Zjn_sc00041.1.g02290.1.sm.mkhc Zjn_sc00041.1.g02030.1.am.mk

This multiplicon is a higher level multiplicon, indicating that it contains more segments than it's parental multiplicon.
To explore the parental multiplicon, view the multiplicon in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
3435 18 33 26 90

This multiplicon is a lower level multiplicon with child multiplicons, indicating that there are multiplicons with more colinear segments in the same genomic region.
To explore the child multiplicons, view the multiplicon in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
3437 18 35 25 96
3440 18 35 19 94

This multiplicon is not redundant, but is the parent of one or more redundant multiplicons.
To explore these redundant reduced colinear regions, view the redundant multiplicon(s) in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
55500 2 2 73 301
58714 2 2 60 270
59322 2 2 58 229
71004 2 2 36 165
90624 2 2 23 157
95920 2 2 21 133
98151 2 2 20 122
103162 2 2 19 166
111790 2 2 17 117
128516 2 2 14 100
356716 2 2 5 20