Multiplicon view: 1481 (Experiment Id: 1)   top

The Multiplicon view displays the aligned gene strings of a set of homologous segments.

Multiplicon Information

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
1481 16 23 18 47

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Gene Information

Gene Family Information

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Draw mode Segment ordering Species
Species Chromosome First Gene Last Gene
Brachypodium distachyon Bd1 Bradi1g08290 Bradi1g08120
Cenchrus americanus chr6 Pgl_GLEAN_10029236 Pgl_GLEAN_10029266
Elaeis guineensis EG5.1_Chr6 p5.00_sc00151_p0058 p5.00_sc00151_p0022
Hordeum vulgare chr5H HORVU5Hr1G095970 HORVU5Hr1G096370
Miscanthus sinensis Chr01 Misin01G060700 Misin01G063100
Miscanthus sinensis Chr02 Misin02G064700 Misin02G062500
Oropetium thomaeum Oropetium_genomic_20141112_018 Oropetium_20150105_07601 Oropetium_20150105_07618
Oryza brachyantha 3 OB03G41570 OB03G41750
Oryza sativa ssp. indica Chr1 OsR498G0102045200.01 OsR498G0102054000.01
Oryza sativa ssp. indica Chr3 OsR498G0307065100.01 OsR498G0307077000.01
Oryza sativa ssp. japonica Chr3 LOC_Os03g54780 LOC_Os03g55080
Setaria italica scaffold_9 Seita.9G088100 Seita.9G085800
Sorghum bicolor Chr01 Sobic.001G085700 Sobic.001G084100
Triticum aestivum chr5A TraesCS5A02G392500 TraesCS5A02G395100
Triticum aestivum chr5B TraesCS5B02G397300 TraesCS5B02G399900
Triticum aestivum chr5D TraesCS5D02G402300 TraesCS5D02G404400
Triticum turgidum chr5A TRITD5Av1G205000 TRITD5Av1G205650
Triticum turgidum chr5B TRITD5Bv1G200940 TRITD5Bv1G201710
Zea mays B73 1 Zm00001d034055 Zm00001d034073
Zea mays PH207 chr01 Zm00008a005225 Zm00008a005240
Zea mays PH207 chr03 Zm00008a013748 Zm00008a013724
Zoysia japonica ssp. nagirizaki Zjn_sc00009.1 Zjn_sc00009.1.g11100.1.sm.mkhc Zjn_sc00009.1.g10810.1.sm.mk
Zoysia japonica ssp. nagirizaki Zjn_sc00014.1 Zjn_sc00014.1.g04680.1.am.mkhc Zjn_sc00014.1.g04790.1.am.mkhc

This multiplicon is a higher level multiplicon, indicating that it contains more segments than it's parental multiplicon.
To explore the parental multiplicon, view the multiplicon in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
1480 16 22 8 47

This multiplicon is not redundant, but is the parent of one or more redundant multiplicons.
To explore these redundant reduced colinear regions, view the redundant multiplicon(s) in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
43083 2 2 503 1503
43507 2 2 415 1298
88790 2 2 23 58