Multiplicon view: 1353 (Experiment Id: 1)   top

The Multiplicon view displays the aligned gene strings of a set of homologous segments.

Multiplicon Information

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
1353 16 25 28 74

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Gene Information

Gene Family Information

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Draw mode Segment ordering Species
Species Chromosome First Gene Last Gene
Arabidopsis thaliana Chr2 AT2G03567 AT2G03360
Brachypodium distachyon Bd1 Bradi1g08236 Bradi1g08000
Hordeum vulgare chr3H HORVU3Hr1G070630 HORVU3Hr1G069670
Hordeum vulgare chr5H HORVU5Hr1G096100 HORVU5Hr1G096780
Miscanthus sinensis Chr01 Misin01G061300 Misin01G063800
Miscanthus sinensis Chr02 Misin02G063800 Misin02G062000
Oropetium thomaeum Oropetium_genomic_20141112_018 Oropetium_20150105_07608 Oropetium_20150105_07630
Oryza brachyantha 3 OB03G41630 OB03G41800
Oryza sativa ssp. indica Chr1 OsR498G0101973200.01 OsR498G0101947700.01
Oryza sativa ssp. indica Chr3 OsR498G0307070600.01 OsR498G0307080500.01
Oryza sativa ssp. japonica Chr3 LOC_Os03g54910 LOC_Os03g55130
Setaria italica scaffold_9 Seita.9G087500 Seita.9G085000
Solanum lycopersicum SL2.50ch04 Solyc04g005400.1 Solyc04g005500.2
Solanum lycopersicum SL2.50ch05 Solyc05g012250.1 Solyc05g012670.1
Sorghum bicolor Chr01 Sobic.001G085200 Sobic.001G083400
Triticum aestivum chr3D TraesCS3D02G276400 TraesCS3D02G280000
Triticum aestivum chr5A TraesCS5A02G393300 TraesCS5A02G396400
Triticum aestivum chr5B TraesCS5B02G398100 TraesCS5B02G401300
Triticum aestivum chr5D TraesCS5D02G403100 TraesCS5D02G406100
Triticum turgidum chr5A TRITD5Av1G205190 TRITD5Av1G206030
Triticum turgidum chr5B TRITD5Bv1G201100 TRITD5Bv1G202160
Zea mays B73 1 Zm00001d034062 Zm00001d034080
Zea mays B73 5 Zm00001d013250 Zm00001d013241
Zea mays PH207 chr01 Zm00008a005232 Zm00008a005243
Zoysia japonica ssp. nagirizaki Zjn_sc00014.1 Zjn_sc00014.1.g04730.1.sm.mkhc Zjn_sc00014.1.g04880.1.sm.mkhc

This multiplicon is a higher level multiplicon, indicating that it contains more segments than it's parental multiplicon.
To explore the parental multiplicon, view the multiplicon in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
1352 16 24 24 71

This multiplicon is not redundant, but is the parent of one or more redundant multiplicons.
To explore these redundant reduced colinear regions, view the redundant multiplicon(s) in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
41874 2 2 847 1782
42319 2 2 668 1801