Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
p5.00_sc00154_p0042	Elaeis guineensis	HOM04x5M005753	ORTHO04x5M007082	4.2e-104	380.2	212	100.0
p5.00_sc00259_p0012	Elaeis guineensis	HOM04x5M005753	ORTHO04x5M007082	3.0e-102	374.0	212	95.8
ASH_gene14924	Apostasia shenzhenica	HOM04x5M005753	ORTHO04x5M007082	1.9e-93	344.7	212	88.2
Aco014399	Ananas comosus	HOM04x5M005753	ORTHO04x5M007082	2.5e-93	344.4	216	89.8
Ma08_g03290	Musa acuminata	HOM04x5M005753	ORTHO04x5M007082	7.4e-93	342.8	211	84.8
Ma10_g10040	Musa acuminata	HOM04x5M005753	ORTHO04x5M007082	4.5e-90	333.6	211	85.8
CALSI_Maker00015618	Calamus simplicifolius	HOM04x5M005753	ORTHO04x5M007082	7.6e-90	332.8	191	96.3
Potri.004G035500	Populus trichocarpa	HOM04x5M005753	ORTHO04x5M007082	8.7e-86	319.3	212	75.5
GSVIVG01006715001	Vitis vinifera	HOM04x5M005753	ORTHO04x5M007082	5.7e-85	316.6	212	78.8
Solyc02g080270.2	Solanum lycopersicum	HOM04x5M005753	ORTHO04x5M007082	7.4e-85	316.2	212	75.9
Potri.011G043800	Populus trichocarpa	HOM04x5M005753	ORTHO04x5M007082	3.1e-83	310.8	212	78.8
Zosma467g00170	Zostera marina	HOM04x5M005753	ORTHO04x5M007082	6.9e-83	309.7	208	76.0
AT4G21560	Arabidopsis thaliana	HOM04x5M005753	ORTHO04x5M007082	1.2e-82	308.9	212	73.1
Solyc03g031750.1	Solanum lycopersicum	HOM04x5M005753	ORTHO04x5M007082	1.2e-82	308.9	212	74.5
AT4G05000	Arabidopsis thaliana	HOM04x5M005753	ORTHO04x5M007082	1.7e-81	305.1	212	71.2
CALSI_Maker00002332	Calamus simplicifolius	HOM04x5M005753	ORTHO04x5M007082	9.3e-80	299.3	212	82.5
ATR1149G025	Amborella trichopoda	HOM04x5M005753	ORTHO04x5M007082	1.1e-77	292.4	209	71.8
PAB00012356	Picea abies	HOM04x5M005753	ORTHO04x5M007082	9.1e-75	282.7	206	69.9
Mapoly0186s0005	Marchantia polymorpha	HOM04x5M005753	ORTHO04x5M007082	1.5e-74	282.0	211	68.7
Bradi2g51800	Brachypodium distachyon	HOM04x5M005753	ORTHO04x5M007082	5.9e-74	280.0	214	74.3
Sobic.003G317200	Sorghum bicolor	HOM04x5M005753	ORTHO04x5M007082	5.9e-74	280.0	214	74.8
Zm00001d043269	Zea mays B73	HOM04x5M005753	ORTHO04x5M007082	5.9e-74	280.0	214	74.8
Zm00007a00050933	Zea mays B104	HOM04x5M005753	ORTHO04x5M007082	5.9e-74	280.0	214	74.8
Misin05G292600	Miscanthus sinensis	HOM04x5M005753	ORTHO04x5M007082	7.7e-74	279.6	214	75.7
Zjn_sc00009.1.g09930.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M005753	ORTHO04x5M007082	1.3e-73	278.9	217	74.2
Zjn_sc00040.1.g01780.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M005753	ORTHO04x5M007082	1.3e-73	278.9	216	73.1
Zm00001d012618	Zea mays B73	HOM04x5M005753	ORTHO04x5M007082	1.3e-73	278.9	214	74.8
Zm00007a00024916	Zea mays B104	HOM04x5M005753	ORTHO04x5M007082	1.3e-73	278.9	214	74.8
LOC_Os01g57260	Oryza sativa ssp. japonica	HOM04x5M005753	ORTHO04x5M007082	1.7e-73	278.5	214	75.2
OsR498G0102101700.01	Oryza sativa ssp. indica	HOM04x5M005753	ORTHO04x5M007082	1.7e-73	278.5	214	75.2
Seita.5G340600	Setaria italica	HOM04x5M005753	ORTHO04x5M007082	2.2e-73	278.1	211	76.3
Misin06G281600	Miscanthus sinensis	HOM04x5M005753	ORTHO04x5M007082	3.8e-73	277.3	214	75.2
LP036182	Lolium perenne	HOM04x5M005753	ORTHO04x5M007082	3.2e-72	274.2	214	73.4
Oropetium_20150105_12722	Oropetium thomaeum	HOM04x5M005753	ORTHO04x5M007082	3.2e-72	274.2	216	72.2
PH01000267G1150	Phyllostachys edulis	HOM04x5M005753	ORTHO04x5M007082	3.2e-72	274.2	211	74.9
PH01000109G1220	Phyllostachys edulis	HOM04x5M005753	ORTHO04x5M007082	1.6e-71	271.9	214	73.4
gene13632	Selaginella moellendorffii	HOM04x5M005753	ORTHO04x5M007082	2.3e-70	268.1	207	66.7
gene12907	Selaginella moellendorffii	HOM04x5M005753	ORTHO04x5M007082	2.3e-70	268.1	207	66.7
Pp3c14_20060	Physcomitrium patens	HOM04x5M005753	ORTHO04x5M007082	3.9e-70	267.3	208	64.4
Pp3c17_18750	Physcomitrium patens	HOM04x5M005753	ORTHO04x5M007082	7.4e-69	263.1	208	64.4
OB01G42010	Oryza brachyantha	HOM04x5M000005	ORTHO04x5M000867	2.8e-68	261.2	203	75.4
Zm00008a033108	Zea mays PH207	HOM04x5M005753	ORTHO04x5M007082	4.2e-64	247.3	193	75.1
TraesCS3D02G314200	Triticum aestivum	HOM04x5M005753	ORTHO04x5M007082	7.4e-61	236.5	215	62.8
TraesCS3B02G349400	Triticum aestivum	HOM04x5M005753	ORTHO04x5M007082	1.7e-60	235.3	215	64.2
TraesCS3A02G317000	Triticum aestivum	HOM04x5M005753	ORTHO04x5M007082	1.7e-60	235.3	215	66.0
TRITD3Bv1G178970	Triticum turgidum	HOM04x5M005753	ORTHO04x5M007082	1.7e-60	235.3	215	64.2
TRITD3Av1G201290	Triticum turgidum	HOM04x5M005753	ORTHO04x5M007082	1.7e-60	235.3	215	66.0
Zm00008a013662	Zea mays PH207	HOM04x5M005753	ORTHO04x5M007082	9.4e-56	219.5	219	63.0
Pgl_GLEAN_10012920	Cenchrus americanus	HOM04x5M005753	ORTHO04x5M007082	1.4e-54	215.7	361	43.5
Cre16.g678100	Chlamydomonas reinhardtii	HOM04x5M005753	ORTHO04x5M007082	1.7e-52	208.8	205	51.2
Ma10_g09150	Musa acuminata	HOM04x5M000001	ORTHO04x5M000001	5.6e-24	114.0	87	66.7
MCO01G694	Micromonas commoda	HOM04x5M005753	ORTHO04x5M007082	5.2e-22	107.5	233	33.9
PEQU_04978	Phalaenopsis equestris	HOM04x5M005753	ORTHO04x5M007082	8.1e-15	83.6	53	81.1
Spipo8G0015400	Spirodela polyrhiza	HOM04x5M005753	ORTHO04x5M007082	7.5e-13	77.0	63	65.1
Zjn_sc00019.1.g01060.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M005753	ORTHO04x5M007082	1.5e-08	62.8	37	73.0
ASH_gene15936	Apostasia shenzhenica	HOM04x5M005753	ORTHO04x5M044414	3.6e-07	58.2	131	38.2
Zm00008a034107	Zea mays PH207	HOM04x5M014912	ORTHO04x5M017882	3.1e-06	55.1	45	60.0
Zm00007a00041295	Zea mays B104	HOM04x5M014912	ORTHO04x5M017882	5.2e-06	54.3	48	56.2
Zm00008a017941	Zea mays PH207	HOM04x5M014912	ORTHO04x5M017882	5.2e-06	54.3	48	56.2

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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