Monocots PLAZA 4.5 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
gene10650	Selaginella moellendorffii	HOM04x5M004507	ORTHO04x5M005410	2.8e-281	969.9	476	100.0
gene36333	Selaginella moellendorffii	HOM04x5M004507	ORTHO04x5M005410	2.8e-281	969.9	476	100.0
gene37195	Selaginella moellendorffii	HOM04x5M004507	ORTHO04x5M005410	1.7e-153	545.4	261	100.0
ASH_gene5141	Apostasia shenzhenica	HOM04x5M004507	ORTHO04x5M005410	2.0e-114	415.6	479	44.1
Potri.016G030400	Populus trichocarpa	HOM04x5M004507	ORTHO04x5M005410	4.9e-113	411.0	480	43.8
Mapoly0010s0124	Marchantia polymorpha	HOM04x5M004507	ORTHO04x5M005410	4.3e-109	397.9	498	42.8
Seita.7G310400	Setaria italica	HOM04x5M004507	ORTHO04x5M005410	1.1e-107	393.3	478	43.5
Zosma6g00180	Zostera marina	HOM04x5M004507	ORTHO04x5M005410	1.4e-107	392.9	482	44.2
Ma08_g26840	Musa acuminata	HOM04x5M004507	ORTHO04x5M005410	1.5e-106	389.4	479	42.6
AT3G56900	Arabidopsis thaliana	HOM04x5M004507	ORTHO04x5M005410	2.6e-106	388.7	481	43.9
OB11G11590	Oryza brachyantha	HOM04x5M004507	ORTHO04x5M005410	4.5e-106	387.9	479	41.5
Sobic.008G017200	Sorghum bicolor	HOM04x5M004507	ORTHO04x5M005410	7.7e-106	387.1	481	42.4
OsR498G1119370400.01	Oryza sativa ssp. indica	HOM04x5M004507	ORTHO04x5M005410	2.9e-105	385.2	479	41.3
LOC_Os12g03540	Oryza sativa ssp. japonica	HOM04x5M004507	ORTHO04x5M005410	5.0e-105	384.4	484	42.4
Seita.8G003800	Setaria italica	HOM04x5M004507	ORTHO04x5M005410	5.0e-105	384.4	482	42.5
OsR498G1220875600.01	Oryza sativa ssp. indica	HOM04x5M004507	ORTHO04x5M005410	8.5e-105	383.6	479	42.4
TraesCS5D02G152200	Triticum aestivum	HOM04x5M004507	ORTHO04x5M005410	8.5e-105	383.6	485	42.9
HORVU5Hr1G045070	Hordeum vulgare	HOM04x5M004507	ORTHO04x5M005410	1.9e-104	382.5	485	42.7
Misin15G007600	Miscanthus sinensis	HOM04x5M004507	ORTHO04x5M005410	3.2e-104	381.7	481	42.0
LOC_Os11g03794	Oryza sativa ssp. japonica	HOM04x5M004507	ORTHO04x5M005410	9.4e-104	380.2	479	40.9
Pp3c11_18220	Physcomitrium patens	HOM04x5M004507	ORTHO04x5M005410	1.2e-103	379.8	483	42.2
MisinT482300	Miscanthus sinensis	HOM04x5M004507	ORTHO04x5M005410	2.3e-102	375.6	342	50.6
TraesCS5A02G138500	Triticum aestivum	HOM04x5M004507	ORTHO04x5M005410	2.0e-101	372.5	485	42.7
p5.00_sc00094_p0061	Elaeis guineensis	HOM04x5M004507	ORTHO04x5M005410	1.3e-100	369.8	479	41.8
LP033593	Lolium perenne	HOM04x5M004507	ORTHO04x5M005410	8.2e-100	367.1	485	41.9
Oropetium_20150105_11037	Oropetium thomaeum	HOM04x5M004507	ORTHO04x5M005410	6.1e-95	350.9	481	41.0
Zm00008a036332	Zea mays PH207	HOM04x5M004507	ORTHO04x5M005410	9.7e-93	343.6	481	39.7
TRITD5Av1G105920	Triticum turgidum	HOM04x5M004507	ORTHO04x5M005410	5.3e-91	337.8	478	40.8
TraesCS5B02G138600	Triticum aestivum	HOM04x5M004507	ORTHO04x5M005410	7.0e-91	337.4	478	40.6
TRITD5Bv1G088770	Triticum turgidum	HOM04x5M004507	ORTHO04x5M005410	7.0e-91	337.4	478	40.6
GSVIVG01025850001	Vitis vinifera	HOM04x5M004507	ORTHO04x5M005410	5.5e-80	301.2	228	58.3
Sspon.07G0038610-1D	Saccharum spontaneum	HOM04x5M004507	ORTHO04x5M005410	4.4e-77	291.6	465	38.5
CALSI_Maker00048110	Calamus simplicifolius	HOM04x5M004507	ORTHO04x5M005410	2.8e-76	288.9	436	38.3
ATR0307G134	Amborella trichopoda	HOM04x5M004507	ORTHO04x5M005410	7.2e-72	274.2	198	58.6
evm.TU.AsparagusV1_02.1443.V1.1	Asparagus officinalis	HOM04x5M004507	ORTHO04x5M005410	4.7e-71	271.6	199	58.8
Spipo6G0054400	Spirodela polyrhiza	HOM04x5M004507	ORTHO04x5M005410	5.4e-67	258.1	199	56.3
Aco023948	Ananas comosus	HOM04x5M004507	ORTHO04x5M005410	3.5e-66	255.4	437	37.1
Zm00007a00022532	Zea mays B104	HOM04x5M004507	ORTHO04x5M005410	4.5e-66	255.0	200	56.5
Pgl_GLEAN_10033199	Cenchrus americanus	HOM04x5M004507	ORTHO04x5M005410	2.3e-57	226.1	463	33.3
Pgl_GLEAN_10009938	Cenchrus americanus	HOM04x5M004507	ORTHO04x5M005410	5.2e-54	214.9	312	38.5
Bradi4g43700	Brachypodium distachyon	HOM04x5M004507	ORTHO04x5M005410	2.6e-53	212.6	472	32.4
OB12G11930	Oryza brachyantha	HOM04x5M004507	ORTHO04x5M006219	2.2e-52	209.5	320	38.4
PEQU_35849	Phalaenopsis equestris	HOM04x5M004507	ORTHO04x5M005410	5.6e-48	194.9	325	33.2
Sspon.07G0038600-1D	Saccharum spontaneum	HOM04x5M004507	ORTHO04x5M005410	2.5e-40	169.5	461	29.9
Sspon.07G0019960-2C	Saccharum spontaneum	HOM04x5M004507	ORTHO04x5M005410	5.2e-38	161.8	446	30.0
PAB00036398	Picea abies	HOM04x5M004507	ORTHO04x5M005410	2.0e-37	159.8	101	71.3
Sspon.07G0019960-1A	Saccharum spontaneum	HOM04x5M004507	ORTHO04x5M005410	2.1e-34	149.8	421	28.7
Zm00001d023266	Zea mays B73	HOM04x5M004507	ORTHO04x5M005410	8.6e-33	144.4	108	61.1
MCO12G281	Micromonas commoda	HOM04x5M004507	ORTHO04x5M005410	4.7e-31	138.7	401	26.9
LP035520	Lolium perenne	HOM04x5M004507	ORTHO04x5M005410	4.4e-29	132.1	89	59.6
ATR0307G100	Amborella trichopoda	HOM04x5M004507	ORTHO04x5M005410	2.4e-27	126.3	264	33.3
evm.TU.AsparagusV1_02.1442.V1.1	Asparagus officinalis	HOM04x5M004507	ORTHO04x5M005410	1.9e-24	116.7	264	30.7
Zm00001d023264	Zea mays B73	HOM04x5M004507	ORTHO04x5M005410	2.1e-23	113.2	266	31.6
Sspon.07G0019960-1P	Saccharum spontaneum	HOM04x5M004507	ORTHO04x5M005410	9.9e-21	104.4	260	33.1
Solyc08g036600.1	Solanum lycopersicum	HOM04x5M004507	ORTHO04x5M005410	1.7e-20	103.6	241	29.0
GSVIVG01025851001	Vitis vinifera	HOM04x5M004507	ORTHO04x5M005410	4.3e-16	89.0	209	30.6
Cre10.g466300	Chlamydomonas reinhardtii	HOM04x5M004507	ORTHO04x5M005410	3.0e-09	66.2	116	38.8

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment