Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
evm.TU.AsparagusV1_05.1482.V1.1	Asparagus officinalis	HOM04x5M023745	ORTHO04x5M020024	3.9e-50	199.9	95	100.0
evm.TU.AsparagusV1_Unassigned.813.V1.1	Asparagus officinalis	HOM04x5M023745	ORTHO04x5M020024	4.0e-10	67.0	31	100.0
evm.TU.AsparagusV1_Unassigned.159.V1.1	Asparagus officinalis	HOM04x5M023745	ORTHO04x5M020024	4.0e-10	67.0	31	100.0
Bradi3g17762	Brachypodium distachyon	HOM04x5M001967	ORTHO04x5M002924	7.0e-07	56.2	28	89.3
Pgl_GLEAN_10032189	Cenchrus americanus	HOM04x5M001967	ORTHO04x5M002924	7.0e-07	56.2	33	72.7
HORVU7Hr1G082330	Hordeum vulgare	HOM04x5M001967	ORTHO04x5M002924	7.0e-07	56.2	28	89.3
LP003787	Lolium perenne	HOM04x5M001967	ORTHO04x5M002924	7.0e-07	56.2	28	89.3
TraesCS7A02G334200	Triticum aestivum	HOM04x5M001967	ORTHO04x5M002924	7.0e-07	56.2	28	89.3
Aco006605	Ananas comosus	HOM04x5M001967	ORTHO04x5M002924	9.2e-07	55.8	30	80.0
Potri.016G018500	Populus trichocarpa	HOM04x5M001967	ORTHO04x5M002924	1.2e-06	55.5	28	89.3
Potri.006G020900	Populus trichocarpa	HOM04x5M001967	ORTHO04x5M002924	1.2e-06	55.5	28	89.3
Zm00007a00024360	Zea mays B104	HOM04x5M001967	ORTHO04x5M002924	1.2e-06	55.5	28	89.3
Oropetium_20150105_14001	Oropetium thomaeum	HOM04x5M001967	ORTHO04x5M002924	2.0e-06	54.7	28	85.7
Aco007465	Ananas comosus	HOM04x5M001967	ORTHO04x5M002924	2.7e-06	54.3	28	85.7
ASH_gene4483	Apostasia shenzhenica	HOM04x5M001967	ORTHO04x5M002924	2.7e-06	54.3	28	85.7
Ma05_g00320	Musa acuminata	HOM04x5M001967	ORTHO04x5M002924	2.7e-06	54.3	28	85.7
OB08G16040	Oryza brachyantha	HOM04x5M001967	ORTHO04x5M002924	2.7e-06	54.3	28	85.7
LOC_Os08g10510	Oryza sativa ssp. japonica	HOM04x5M001967	ORTHO04x5M002924	2.7e-06	54.3	28	85.7
OsR498G0815394600.01	Oryza sativa ssp. indica	HOM04x5M001967	ORTHO04x5M002924	2.7e-06	54.3	28	85.7
PH01000338G0170	Phyllostachys edulis	HOM04x5M001967	ORTHO04x5M002924	2.7e-06	54.3	28	85.7
PEQU_06113	Phalaenopsis equestris	HOM04x5M001967	ORTHO04x5M002924	2.7e-06	54.3	28	85.7
Seita.6G029400	Setaria italica	HOM04x5M001967	ORTHO04x5M002924	2.7e-06	54.3	28	85.7
Solyc07g043310.2	Solanum lycopersicum	HOM04x5M001967	ORTHO04x5M002924	2.7e-06	54.3	28	85.7
AT3G22200	Arabidopsis thaliana	HOM04x5M001967	ORTHO04x5M002924	3.5e-06	53.9	28	85.7
Misin07G136900	Miscanthus sinensis	HOM04x5M001967	ORTHO04x5M002924	3.5e-06	53.9	28	85.7
OB04G32110	Oryza brachyantha	HOM04x5M001967	ORTHO04x5M002924	3.5e-06	53.9	28	85.7
LOC_Os04g52450	Oryza sativa ssp. japonica	HOM04x5M001967	ORTHO04x5M002924	3.5e-06	53.9	28	85.7
OsR498G0409274100.01	Oryza sativa ssp. indica	HOM04x5M001967	ORTHO04x5M002924	3.5e-06	53.9	28	85.7
Sobic.007G074500	Sorghum bicolor	HOM04x5M001967	ORTHO04x5M002924	3.5e-06	53.9	28	85.7
Sspon.06G0009260-2B	Saccharum spontaneum	HOM04x5M001967	ORTHO04x5M002924	3.5e-06	53.9	28	85.7
Sspon.06G0009270-1A	Saccharum spontaneum	HOM04x5M001967	ORTHO04x5M002924	3.5e-06	53.9	28	85.7
Sspon.06G0009260-4D	Saccharum spontaneum	HOM04x5M001967	ORTHO04x5M002924	3.5e-06	53.9	28	85.7
Zm00001d049380	Zea mays B73	HOM04x5M001967	ORTHO04x5M002924	3.5e-06	53.9	28	85.7
Zm00007a00007413	Zea mays B104	HOM04x5M001967	ORTHO04x5M002924	3.5e-06	53.9	28	85.7
Zm00008a015445	Zea mays PH207	HOM04x5M001967	ORTHO04x5M002924	3.5e-06	53.9	28	85.7
Solyc12g006450.1	Solanum lycopersicum	HOM04x5M001967	ORTHO04x5M002924	4.6e-06	53.5	28	85.7
GSVIVG01015824001	Vitis vinifera	HOM04x5M001967	ORTHO04x5M002924	4.6e-06	53.5	28	85.7
Zosma281g00200	Zostera marina	HOM04x5M001967	ORTHO04x5M002924	4.6e-06	53.5	28	85.7
ATR0752G155	Amborella trichopoda	HOM04x5M001967	ORTHO04x5M002924	5.9e-06	53.1	28	85.7
Bradi5g21710	Brachypodium distachyon	HOM04x5M001967	ORTHO04x5M002924	5.9e-06	53.1	28	82.1
Misin12G206200	Miscanthus sinensis	HOM04x5M001967	ORTHO04x5M002924	5.9e-06	53.1	28	82.1
Misin11G210200	Miscanthus sinensis	HOM04x5M001967	ORTHO04x5M002924	5.9e-06	53.1	28	82.1
Sobic.006G214200	Sorghum bicolor	HOM04x5M001967	ORTHO04x5M002924	5.9e-06	53.1	28	82.1
Sspon.06G0009270-2D	Saccharum spontaneum	HOM04x5M001967	ORTHO04x5M002924	5.9e-06	53.1	28	82.1
TraesCS2A02G421400	Triticum aestivum	HOM04x5M001967	ORTHO04x5M002924	5.9e-06	53.1	28	82.1
TraesCS2B02G440400	Triticum aestivum	HOM04x5M001967	ORTHO04x5M002924	5.9e-06	53.1	28	82.1
TraesCS2D02G418400	Triticum aestivum	HOM04x5M001967	ORTHO04x5M002924	5.9e-06	53.1	28	82.1
TraesCS7B02G246800	Triticum aestivum	HOM04x5M001967	ORTHO04x5M002924	5.9e-06	53.1	28	82.1
TraesCS7D02G341900	Triticum aestivum	HOM04x5M001967	ORTHO04x5M002924	5.9e-06	53.1	28	82.1
TRITD2Av1G246680	Triticum turgidum	HOM04x5M001967	ORTHO04x5M002924	5.9e-06	53.1	28	82.1
TRITD2Bv1G208440	Triticum turgidum	HOM04x5M001967	ORTHO04x5M002924	5.9e-06	53.1	28	82.1
TRITD7Bv1G139920	Triticum turgidum	HOM04x5M001967	ORTHO04x5M002924	5.9e-06	53.1	28	82.1
Zm00007a00020568	Zea mays B104	HOM04x5M001967	ORTHO04x5M002924	5.9e-06	53.1	28	82.1
Zm00008a006292	Zea mays PH207	HOM04x5M001967	ORTHO04x5M002924	5.9e-06	53.1	28	82.1
Pgl_GLEAN_10001659	Cenchrus americanus	HOM04x5M001967	ORTHO04x5M002924	7.8e-06	52.8	28	82.1
HORVU2Hr1G098880	Hordeum vulgare	HOM04x5M001967	ORTHO04x5M002924	7.8e-06	52.8	28	82.1
LP020752	Lolium perenne	HOM04x5M001967	ORTHO04x5M002924	7.8e-06	52.8	28	82.1
Pp3c1_32910	Physcomitrium patens	HOM04x5M001967	ORTHO04x5M002924	7.8e-06	52.8	28	82.1
Seita.7G236000	Setaria italica	HOM04x5M001967	ORTHO04x5M002924	7.8e-06	52.8	28	82.1
Spipo8G0019300	Spirodela polyrhiza	HOM04x5M001967	ORTHO04x5M002924	7.8e-06	52.8	28	85.7
Zm00001d026293	Zea mays B73	HOM04x5M001967	ORTHO04x5M002924	7.8e-06	52.8	28	82.1

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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