Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
evm.TU.AsparagusV1_04.1449.V1.1	Asparagus officinalis	HOM04x5M005640	ORTHO04x5M006896	1.5e-65	252.3	235	100.0
ASH_gene19865	Apostasia shenzhenica	HOM04x5M005640	ORTHO04x5M006896	9.5e-33	143.3	130	63.1
CALSI_Maker00013202	Calamus simplicifolius	HOM04x5M005640	ORTHO04x5M006896	1.4e-31	139.4	125	65.6
PH01000837G0150	Phyllostachys edulis	HOM04x5M005640	ORTHO04x5M006896	5.8e-30	134.0	130	57.7
Ma10_g07040	Musa acuminata	HOM04x5M005640	ORTHO04x5M006896	2.9e-29	131.7	131	60.3
LOC_Os12g25640	Oryza sativa ssp. japonica	HOM04x5M005640	ORTHO04x5M006896	6.4e-29	130.6	131	55.7
OsR498G1221505100.01	Oryza sativa ssp. indica	HOM04x5M005640	ORTHO04x5M006896	6.4e-29	130.6	131	55.7
Seita.3G299700	Setaria italica	HOM04x5M005640	ORTHO04x5M006896	1.1e-28	129.8	131	55.0
Seita.8G121000	Setaria italica	HOM04x5M005640	ORTHO04x5M006896	4.6e-27	124.4	130	55.4
OB12G19340	Oryza brachyantha	HOM04x5M005640	ORTHO04x5M006896	6.0e-27	124.0	131	55.7
CALSI_Maker00027408	Calamus simplicifolius	HOM04x5M005640	ORTHO04x5M006896	7.8e-27	123.6	129	54.3
Sobic.005G108801	Sorghum bicolor	HOM04x5M005640	ORTHO04x5M006896	7.8e-27	123.6	134	56.0
Misin10G093600	Miscanthus sinensis	HOM04x5M005640	ORTHO04x5M006896	3.0e-26	121.7	134	56.0
p5.00_sc00091_p0052	Elaeis guineensis	HOM04x5M005640	ORTHO04x5M006896	3.9e-26	121.3	129	55.0
Potri.015G094600	Populus trichocarpa	HOM04x5M005640	ORTHO04x5M006896	6.6e-26	120.6	131	55.7
TRITD4Bv1G092540	Triticum turgidum	HOM04x5M005640	ORTHO04x5M006896	3.3e-25	118.2	130	53.8
Aco016073	Ananas comosus	HOM04x5M005640	ORTHO04x5M006896	5.6e-25	117.5	117	55.6
LP026082	Lolium perenne	HOM04x5M005640	ORTHO04x5M006896	5.6e-25	117.5	130	52.3
Bradi4g19110	Brachypodium distachyon	HOM04x5M005640	ORTHO04x5M006896	7.3e-25	117.1	127	53.5
TraesCS4A02G157000	Triticum aestivum	HOM04x5M005640	ORTHO04x5M006896	1.2e-24	116.3	130	53.1
TRITD4Av1G105650	Triticum turgidum	HOM04x5M005640	ORTHO04x5M006896	1.2e-24	116.3	130	53.1
Potri.012G096900	Populus trichocarpa	HOM04x5M005640	ORTHO04x5M006896	1.8e-23	112.5	128	52.3
Zosma208g00110	Zostera marina	HOM04x5M005640	ORTHO04x5M006896	5.2e-23	110.9	126	52.4
Zm00001d049193	Zea mays B73	HOM04x5M005640	ORTHO04x5M006896	1.2e-22	109.8	127	54.3
Misin09G120200	Miscanthus sinensis	HOM04x5M005640	ORTHO04x5M006896	2.6e-22	108.6	160	47.5
LOC_Os11g29340	Oryza sativa ssp. japonica	HOM04x5M005640	ORTHO04x5M006896	4.4e-22	107.8	136	50.0
OsR498G1120151100.01	Oryza sativa ssp. indica	HOM04x5M005640	ORTHO04x5M006896	4.4e-22	107.8	136	50.0
Pgl_GLEAN_10038078	Cenchrus americanus	HOM04x5M005640	ORTHO04x5M006896	6.4e-21	104.0	120	53.3
OB11G20740	Oryza brachyantha	HOM04x5M005640	ORTHO04x5M006896	4.1e-20	101.3	137	48.9
AT5G63460	Arabidopsis thaliana	HOM04x5M005640	ORTHO04x5M006896	2.3e-18	95.5	131	45.0
Zm00008a015305	Zea mays PH207	HOM04x5M005640	ORTHO04x5M006896	3.9e-18	94.7	118	51.7
Pp3c8_10310	Physcomitrium patens	HOM04x5M005640	ORTHO04x5M006896	1.5e-17	92.8	133	45.9
Solyc03g111270.2	Solanum lycopersicum	HOM04x5M005640	ORTHO04x5M006896	2.5e-17	92.0	128	45.3
PEQU_08091	Phalaenopsis equestris	HOM04x5M005640	ORTHO04x5M006896	3.3e-17	91.7	78	62.8
GSVIVG01008533001	Vitis vinifera	HOM04x5M005640	ORTHO04x5M006896	4.3e-17	91.3	133	45.1
Ma10_g29090	Musa acuminata	HOM04x5M005640	ORTHO04x5M006896	1.2e-16	89.7	130	46.2
CALSI_Maker00044827	Calamus simplicifolius	HOM04x5M005640	ORTHO04x5M006896	2.1e-16	89.0	79	60.8
PEQU_32717	Phalaenopsis equestris	HOM04x5M005640	ORTHO04x5M006896	1.8e-15	85.9	121	47.1
TraesCS4D02G151000	Triticum aestivum	HOM04x5M005640	ORTHO04x5M006896	2.4e-15	85.5	114	50.9
TraesCS4B02G153400	Triticum aestivum	HOM04x5M005640	ORTHO04x5M006896	3.1e-15	85.1	112	50.9
Oropetium_20150105_26651	Oropetium thomaeum	HOM04x5M005640	ORTHO04x5M006896	5.2e-15	84.3	103	48.5
Mapoly0121s0035	Marchantia polymorpha	HOM04x5M005640	ORTHO04x5M006896	1.2e-11	73.2	84	46.4
Spipo13G0026800	Spirodela polyrhiza	HOM04x5M005640	ORTHO04x5M006896	2.7e-11	72.0	128	39.1
ATR0561G036	Amborella trichopoda	HOM04x5M005640	ORTHO04x5M006896	1.7e-10	69.3	42	73.8
Zm00007a00034132	Zea mays B104	HOM04x5M005640	ORTHO04x5M006896	1.2e-08	63.2	57	56.1
p5.00_sc00125_p0035	Elaeis guineensis	HOM04x5M005640	ORTHO04x5M006896	4.7e-08	61.2	72	51.4
gene30364	Selaginella moellendorffii	HOM04x5M005640	ORTHO04x5M006896	4.0e-07	58.2	126	35.7
PH01000624G0140	Phyllostachys edulis	HOM04x5M005640	ORTHO04x5M006896	2.0e-06	55.8	92	37.0
Cre02.g097334	Chlamydomonas reinhardtii	HOM04x5M005640	ORTHO04x5M006896	9.9e-06	53.5	130	36.9

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
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