Interactive Phylogenetics Module

Gene Id
Zm00008a004117

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Include Gene ID Organism Homologous gene familyOrthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00008a004117 Zea mays PH207 HOM04x5M001747 ORTHO04x5M002018 0.0e+00 1304.3 696 100.0
Zm00007a00014538 Zea mays B104 HOM04x5M001747 ORTHO04x5M002018 0.0e+00 1248.8 677 99.0
Misin01G188300 Miscanthus sinensis HOM04x5M001747 ORTHO04x5M002018 0.0e+00 1246.5 697 92.3
Sspon.01G0020010-2B Saccharum spontaneum HOM04x5M001747 ORTHO04x5M002018 0.0e+00 1241.1 697 92.0
Misin02G189500 Miscanthus sinensis HOM04x5M001747 ORTHO04x5M002018 0.0e+00 1239.6 697 91.8
Sobic.001G211500 Sorghum bicolor HOM04x5M001747 ORTHO04x5M002018 0.0e+00 1239.2 718 93.7
Sspon.01G0019980-1A Saccharum spontaneum HOM04x5M001747 ORTHO04x5M002018 0.0e+00 1229.9 640 97.5
Zm00001d032632 Zea mays B73 HOM04x5M001747 ORTHO04x5M002018 0.0e+00 1229.2 700 95.3
Seita.9G212100 Setaria italica HOM04x5M001747 ORTHO04x5M002018 0.0e+00 1218.4 640 95.8
Pgl_GLEAN_10028670 Cenchrus americanus HOM04x5M001747 ORTHO04x5M002018 0.0e+00 1196.8 627 96.3
Bradi3g29530 Brachypodium distachyon HOM04x5M001747 ORTHO04x5M002018 0.0e+00 1166.4 636 91.5
TraesCS1D02G172600 Triticum aestivum HOM04x5M001747 ORTHO04x5M002018 0.0e+00 1166.4 640 90.8
TraesCS1B02G184700 Triticum aestivum HOM04x5M001747 ORTHO04x5M002018 0.0e+00 1166.0 640 90.6
TraesCS1A02G172100 Triticum aestivum HOM04x5M001747 ORTHO04x5M002018 0.0e+00 1165.2 640 90.8
Sspon.01G0020010-1A Saccharum spontaneum HOM04x5M001747 ORTHO04x5M002018 0.0e+00 1162.9 691 87.8
HORVU1Hr1G044350 Hordeum vulgare HOM04x5M001747 ORTHO04x5M002018 0.0e+00 1161.4 640 90.5
Sspon.01G0020010-3C Saccharum spontaneum HOM04x5M001747 ORTHO04x5M002018 0.0e+00 1159.4 698 87.2
OB10G21140 Oryza brachyantha HOM04x5M001747 ORTHO04x5M002018 0.0e+00 1154.8 628 92.0
LOC_Os10g34750 Oryza sativa ssp. japonica HOM04x5M001747 ORTHO04x5M002018 0.0e+00 1153.3 629 91.7
OsR498G1018951400.01 Oryza sativa ssp. indica HOM04x5M001747 ORTHO04x5M002018 0.0e+00 1153.3 629 91.7
LP020896 Lolium perenne HOM04x5M001747 ORTHO04x5M002018 0.0e+00 1150.2 640 89.4
Aco007673 Ananas comosus HOM04x5M001747 ORTHO04x5M002018 0.0e+00 1107.0 640 86.6
TRITD1Bv1G107980 Triticum turgidum HOM04x5M001747 ORTHO04x5M002018 0.0e+00 1079.3 591 90.9
Ma04_g22700 Musa acuminata HOM04x5M001747 ORTHO04x5M002018 4.9e-312 1073.2 641 83.3
Spipo16G0032600 Spirodela polyrhiza HOM04x5M001747 ORTHO04x5M002018 2.8e-303 1043.9 640 80.3
TRITD1Av1G110770 Triticum turgidum HOM04x5M001747 ORTHO04x5M002018 8.0e-298 1025.8 565 90.6
ASH_gene2944 Apostasia shenzhenica HOM04x5M001747 ORTHO04x5M002018 1.8e-297 1024.6 646 79.9
PEQU_15249 Phalaenopsis equestris HOM04x5M001747 ORTHO04x5M002018 1.3e-292 1008.4 641 78.6
Zosma34g01290 Zostera marina HOM04x5M001747 ORTHO04x5M002018 5.6e-291 1003.0 640 77.5
CALSI_Maker00032487 Calamus simplicifolius HOM04x5M001747 ORTHO04x5M002018 2.6e-280 967.6 640 76.4
GSVIVG01031470001 Vitis vinifera HOM04x5M001747 ORTHO04x5M002018 5.1e-276 953.4 640 73.9
ATR0329G039 Amborella trichopoda HOM04x5M001747 ORTHO04x5M002018 6.2e-274 946.4 637 73.0
PH01001204G0070 Phyllostachys edulis HOM04x5M001747 ORTHO04x5M002018 5.4e-270 933.3 565 84.6
Solyc11g066370.1 Solanum lycopersicum HOM04x5M001747 ORTHO04x5M002018 1.6e-269 931.8 622 72.7
Potri.009G005900 Populus trichocarpa HOM04x5M001747 ORTHO04x5M002018 7.8e-269 929.5 624 72.3
AT1G08130 Arabidopsis thaliana HOM04x5M001747 ORTHO04x5M002018 2.8e-266 921.0 633 70.6
Mapoly0033s0129 Marchantia polymorpha HOM04x5M001747 ORTHO04x5M002018 9.0e-257 889.4 639 68.1
Pp3c13_20200 Physcomitrium patens HOM04x5M001747 ORTHO04x5M002018 2.2e-255 884.8 638 67.4
Pp3c13_20209 Physcomitrium patens HOM04x5M001747 ORTHO04x5M002018 2.2e-255 884.8 638 67.4
gene13434 Selaginella moellendorffii HOM04x5M001747 ORTHO04x5M002018 1.2e-253 879.0 635 68.3
gene26512 Selaginella moellendorffii HOM04x5M001747 ORTHO04x5M002018 4.6e-253 877.1 635 68.0
evm.TU.AsparagusV1_04.2270.V1.1 Asparagus officinalis HOM04x5M001747 ORTHO04x5M002018 1.2e-229 799.3 487 82.3
Sspon.01G0019980-2B Saccharum spontaneum HOM04x5M001747 ORTHO04x5M002018 2.7e-221 771.5 477 86.4
AT1G49250 Arabidopsis thaliana HOM04x5M001747 ORTHO04x5M002018 6.7e-220 766.9 603 63.3
Oropetium_20150105_11084 Oropetium thomaeum HOM04x5M001747 ORTHO04x5M002018 1.4e-204 716.1 677 59.8
MCO11G338 Micromonas commoda HOM04x5M001747 ORTHO04x5M002018 3.0e-196 688.3 628 57.2
Cre07.g325716 Chlamydomonas reinhardtii HOM04x5M001747 ORTHO04x5M002018 2.8e-181 638.6 640 52.0
PH01000186G0040 Phyllostachys edulis HOM04x5M001747 ORTHO04x5M002018 3.4e-147 525.4 299 90.0
Mapoly0069s0045 Marchantia polymorpha HOM04x5M001747 ORTHO04x5M002018 6.9e-140 501.1 652 41.6
gene13766 Selaginella moellendorffii HOM04x5M001747 ORTHO04x5M002018 1.3e-138 496.9 630 41.7
Sspon.01G0019980-3C Saccharum spontaneum HOM04x5M001747 ORTHO04x5M002018 4.9e-138 495.0 279 90.0
TraesCS3D02G265000 Triticum aestivum HOM04x5M001747 ORTHO04x5M002018 2.5e-134 482.6 634 39.4
TraesCS3A02G264800 Triticum aestivum HOM04x5M001747 ORTHO04x5M002018 4.3e-134 481.9 637 39.1
TRITD3Av1G176280 Triticum turgidum HOM04x5M001747 ORTHO04x5M002018 4.3e-134 481.9 637 39.1
HORVU3Hr1G063470 Hordeum vulgare HOM04x5M001747 ORTHO04x5M002018 1.6e-133 479.9 634 39.3
OB01G36030 Oryza brachyantha HOM04x5M001747 ORTHO04x5M002018 2.8e-133 479.2 637 38.6
TRITD3Bv1G156800 Triticum turgidum HOM04x5M001747 ORTHO04x5M002018 2.4e-132 476.1 634 39.0
TraesCS3B02G298100 Triticum aestivum HOM04x5M001747 ORTHO04x5M002018 3.1e-132 475.7 632 38.9
OsR498G0101784200.01 Oryza sativa ssp. indica HOM04x5M001747 ORTHO04x5M002018 4.0e-132 475.3 646 38.2
Misin06G224100 Miscanthus sinensis HOM04x5M001747 ORTHO04x5M002018 9.0e-132 474.2 646 37.8
LP029527 Lolium perenne HOM04x5M001747 ORTHO04x5M002018 1.5e-131 473.4 634 38.8
Bradi2g46780 Brachypodium distachyon HOM04x5M001747 ORTHO04x5M002018 3.4e-131 472.2 634 39.1
GSVIVG01030942001 Vitis vinifera HOM04x5M001747 ORTHO04x5M002018 1.3e-130 470.3 637 38.9
Seita.5G274300 Setaria italica HOM04x5M001747 ORTHO04x5M002018 1.7e-130 469.9 633 38.7
ATR0691G097 Amborella trichopoda HOM04x5M001747 ORTHO04x5M002018 2.2e-130 469.5 660 38.9
Solyc02g091120.2 Solanum lycopersicum HOM04x5M001747 ORTHO04x5M002018 1.4e-129 466.8 667 36.9
AT1G66730 Arabidopsis thaliana HOM04x5M001747 ORTHO04x5M002018 5.5e-129 464.9 639 38.7
Ma04_g00670 Musa acuminata HOM04x5M001747 ORTHO04x5M002018 1.2e-128 463.8 638 38.2
CALSI_Maker00050199 Calamus simplicifolius HOM04x5M001747 ORTHO04x5M002018 1.6e-128 463.4 663 38.0
ASH_gene7517 Apostasia shenzhenica HOM04x5M001747 ORTHO04x5M002018 3.5e-128 462.2 642 38.6
LOC_Os01g49180 Oryza sativa ssp. japonica HOM04x5M001747 ORTHO04x5M002018 8.4e-122 441.0 707 34.8
PEQU_31644 Phalaenopsis equestris HOM04x5M001747 ORTHO04x5M002018 1.2e-115 420.6 637 36.1
Pgl_GLEAN_10032519 Cenchrus americanus HOM04x5M001747 ORTHO04x5M002018 8.5e-114 414.5 630 35.6
gene13033 Selaginella moellendorffii HOM04x5M001747 ORTHO04x5M002018 1.1e-110 404.1 513 42.1
Sobic.003G260400 Sorghum bicolor HOM04x5M001747 ORTHO04x5M002018 1.9e-110 403.3 540 38.5
Zjn_sc00017.1.g06380.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM04x5M001747 ORTHO04x5M002018 7.4e-102 374.8 640 41.7
Potri.004G094300 Populus trichocarpa HOM04x5M001747 ORTHO04x5M002018 7.7e-99 364.8 470 39.1
Oropetium_20150105_11565 Oropetium thomaeum HOM04x5M001747 ORTHO04x5M002018 2.9e-98 362.8 633 32.2
MCO09G458 Micromonas commoda HOM04x5M001747 ORTHO04x5M002018 3.9e-95 352.4 612 37.3
PH01000704G0390 Phyllostachys edulis HOM04x5M001747 ORTHO04x5M002018 2.0e-83 313.5 475 35.6
Sspon.03G0031770-1B Saccharum spontaneum HOM04x5M001747 ORTHO04x5M002018 4.5e-83 312.4 414 38.6
Cre06.g278177 Chlamydomonas reinhardtii HOM04x5M001747 ORTHO04x5M002018 7.5e-62 241.9 1023 22.8
p5.00_sc00008_p0159 Elaeis guineensis HOM04x5M001747 ORTHO04x5M002018 2.7e-59 233.4 344 36.6
Aco000044 Ananas comosus HOM04x5M001747 ORTHO04x5M002018 6.6e-58 228.8 424 32.8
Zm00008a014124 Zea mays PH207 HOM04x5M001747 ORTHO04x5M002018 3.3e-57 226.5 271 39.1
Zm00001d043835 Zea mays B73 HOM04x5M001747 ORTHO04x5M002018 1.1e-55 221.5 391 32.7
Sspon.03G0031770-2C Saccharum spontaneum HOM04x5M001747 ORTHO04x5M002018 9.2e-52 208.4 403 31.3
PAB00005808 Picea abies HOM04x5M001747 ORTHO04x5M002018 3.5e-51 206.5 210 43.3
evm.TU.AsparagusV1_09.814.V1.1 Asparagus officinalis HOM04x5M001747 ORTHO04x5M002018 2.3e-50 203.8 437 28.8
p5.00_sc00008_p0160 Elaeis guineensis HOM04x5M001747 ORTHO04x5M002018 3.6e-48 196.4 210 44.8
Spipo19G0024700 Spirodela polyrhiza HOM04x5M001747 ORTHO04x5M002018 1.2e-46 191.4 263 39.9
ATR0749G104 Amborella trichopoda HOM04x5M001747 ORTHO04x5M002018 1.5e-46 191.0 109 82.6
ATR0749G050 Amborella trichopoda HOM04x5M001747 ORTHO04x5M002018 4.1e-44 183.0 128 71.1
PAB00000364 Picea abies HOM04x5M001747 ORTHO04x5M002018 1.2e-43 181.4 116 73.3
Zm00007a00029335 Zea mays B104 HOM04x5M001747 ORTHO04x5M002018 1.4e-39 167.9 276 34.1
PAB00001978 Picea abies HOM04x5M001747 ORTHO04x5M002018 8.4e-37 158.7 110 71.8
PAB00036263 Picea abies HOM04x5M001747 ORTHO04x5M002018 6.6e-34 149.1 90 75.6
Spipo19G0024800 Spirodela polyrhiza HOM04x5M001747 ORTHO04x5M002018 8.1e-32 142.1 228 36.4
gene15054 Selaginella moellendorffii HOM04x5M004601 ORTHO04x5M005443 1.4e-31 141.4 548 24.6
gene25806 Selaginella moellendorffii HOM04x5M004601 ORTHO04x5M005443 6.9e-31 139.0 548 24.5
Pgl_GLEAN_10020369 Cenchrus americanus HOM04x5M004601 ORTHO04x5M005443 1.5e-30 137.9 401 27.7
TraesCS2A02G431800 Triticum aestivum HOM04x5M004601 ORTHO04x5M005443 5.8e-30 136.0 409 27.9
TraesCS2D02G429800 Triticum aestivum HOM04x5M004601 ORTHO04x5M005443 4.9e-29 132.9 411 28.0
Bradi5g20927 Brachypodium distachyon HOM04x5M004601 ORTHO04x5M005443 6.4e-29 132.5 411 27.0
Spipo28G0023000 Spirodela polyrhiza HOM04x5M004601 ORTHO04x5M005443 1.9e-28 131.0 409 26.4
TraesCS2B02G453300 Triticum aestivum HOM04x5M004601 ORTHO04x5M005443 1.9e-28 131.0 409 27.4
Ma01_g18780 Musa acuminata HOM04x5M004601 ORTHO04x5M005443 3.2e-28 130.2 380 26.8
PEQU_25681 Phalaenopsis equestris HOM04x5M004601 ORTHO04x5M005443 4.2e-28 129.8 411 26.8
TRITD2Av1G250540 Triticum turgidum HOM04x5M004601 ORTHO04x5M005443 4.2e-28 129.8 411 27.7
PAB00006638 Picea abies HOM04x5M001747 ORTHO04x5M002018 7.1e-28 129.0 176 35.8
Potri.018G141900 Populus trichocarpa HOM04x5M004601 ORTHO04x5M005443 7.1e-28 129.0 379 26.9
ATR0626G236 Amborella trichopoda HOM04x5M004601 ORTHO04x5M005443 1.6e-27 127.9 406 26.8
TRITD2Bv1G212650 Triticum turgidum HOM04x5M004601 ORTHO04x5M005443 2.1e-27 127.5 411 27.3
Zjn_sc00023.1.g02440.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM04x5M004601 ORTHO04x5M005443 3.5e-27 126.7 413 26.9
GSVIVG01029314001 Vitis vinifera HOM04x5M004601 ORTHO04x5M005443 6.0e-27 125.9 381 26.2
LP005256 Lolium perenne HOM04x5M004601 ORTHO04x5M005443 1.3e-26 124.8 394 28.2
Sobic.006G207300 Sorghum bicolor HOM04x5M004601 ORTHO04x5M005443 1.3e-26 124.8 559 22.4
PH01000224G0720 Phyllostachys edulis HOM04x5M004601 ORTHO04x5M005443 1.7e-26 124.4 404 27.0
Seita.7G229000 Setaria italica HOM04x5M004601 ORTHO04x5M005443 1.7e-26 124.4 439 25.3
AT5G57160 Arabidopsis thaliana HOM04x5M004601 ORTHO04x5M005443 2.3e-26 124.0 413 26.2
PAB00058901 Picea abies HOM04x5M001747 ORTHO04x5M002018 3.9e-26 123.2 75 78.7
Solyc07g017990.2 Solanum lycopersicum HOM04x5M004601 ORTHO04x5M005443 1.1e-25 121.7 345 26.4
Zm00008a014123 Zea mays PH207 HOM04x5M001747 ORTHO04x5M002018 3.3e-25 120.2 155 38.7
Mapoly0001s0137 Marchantia polymorpha HOM04x5M004601 ORTHO04x5M005443 1.6e-24 117.9 402 25.6
Zm00001d002390 Zea mays B73 HOM04x5M004601 ORTHO04x5M005443 1.6e-24 117.9 375 26.1
evm.TU.AsparagusV1_01.2163.V1.1 Asparagus officinalis HOM04x5M001747 ORTHO04x5M002018 2.8e-24 117.1 108 48.1
Zjn_sc00011.1.g00310.1.cf.mkhc Zoysia japonica ssp. nagirizaki HOM04x5M001747 ORTHO04x5M002018 4.8e-24 116.3 140 41.4
Zm00007a00034356 Zea mays B104 HOM04x5M004601 ORTHO04x5M005443 1.1e-23 115.2 379 26.6
evm.TU.AsparagusV1_08.2229.V1.1 Asparagus officinalis HOM04x5M001747 ORTHO04x5M002018 1.8e-23 114.4 102 48.0
Sspon.03G0009130-1A Saccharum spontaneum HOM04x5M001747 ORTHO04x5M002018 2.0e-22 110.9 137 40.1
Potri.004G094200 Populus trichocarpa HOM04x5M001747 ORTHO04x5M002018 7.6e-22 109.0 162 36.4
OsR498G0409240600.01 Oryza sativa ssp. indica HOM04x5M004601 ORTHO04x5M005443 1.7e-21 107.8 484 24.2
CALSI_Maker00020618 Calamus simplicifolius HOM04x5M001747 ORTHO04x5M013120 3.8e-21 106.7 137 40.9
Oropetium_20150105_01621 Oropetium thomaeum HOM04x5M004601 ORTHO04x5M005443 7.9e-19 99.0 383 24.3
OB04G31400 Oryza brachyantha HOM04x5M004601 ORTHO04x5M005443 1.1e-17 95.1 228 31.1
Cre10.g433550 Chlamydomonas reinhardtii HOM04x5M004601 ORTHO04x5M005443 3.3e-17 93.6 429 23.1
Zm00008a006350 Zea mays PH207 HOM04x5M004601 ORTHO04x5M005443 6.2e-16 89.4 394 24.1
Zm00008a014122 Zea mays PH207 HOM04x5M001747 ORTHO04x5M002018 1.4e-15 88.2 106 40.6
evm.TU.AsparagusV1_04.1989.V1.1 Asparagus officinalis HOM04x5M001747 ORTHO04x5M002018 2.4e-15 87.4 69 53.6
Zm00007a00052093 Zea mays B104 HOM04x5M001747 ORTHO04x5M002018 2.6e-14 84.0 98 36.7
Misin05G212300 Miscanthus sinensis HOM04x5M001747 ORTHO04x5M002018 5.8e-14 82.8 98 36.7
ATR0749G026 Amborella trichopoda HOM04x5M001747 ORTHO04x5M002018 3.2e-12 77.0 55 69.1
CALSI_Maker00023721 Calamus simplicifolius HOM04x5M001747 ORTHO04x5M013120 7.1e-12 75.9 67 50.7
CALSI_Maker00003384 Calamus simplicifolius HOM04x5M001747 ORTHO04x5M013120 7.1e-12 75.9 74 45.9
Zm00007a00029334 Zea mays B104 HOM04x5M001747 ORTHO04x5M002018 1.0e-10 72.0 76 42.1
Sspon.03G0031770-3D Saccharum spontaneum HOM04x5M001747 ORTHO04x5M002018 3.9e-10 70.1 232 25.9
CALSI_Maker00001347 Calamus simplicifolius HOM04x5M001747 ORTHO04x5M013120 6.7e-10 69.3 68 45.6
Misin05G212200 Miscanthus sinensis HOM04x5M001747 ORTHO04x5M002018 3.3e-09 67.0 189 27.0
Spipo0G0169600 Spirodela polyrhiza HOM04x5M001747 ORTHO04x5M013120 1.5e-06 58.2 93 35.5

Amborella trichopoda (6 genes)
Ananas comosus (2 genes)
Apostasia shenzhenica (2 genes)
Arabidopsis thaliana (4 genes)
Asparagus officinalis (5 genes)
Brachypodium distachyon (3 genes)
Calamus simplicifolius (6 genes)
Cenchrus americanus (3 genes)
Chlamydomonas reinhardtii (3 genes)
Elaeis guineensis (2 genes)
Hordeum vulgare (2 genes)
Lolium perenne (3 genes)
Marchantia polymorpha (3 genes)
Micromonas commoda (2 genes)
Miscanthus sinensis (5 genes)
Musa acuminata (3 genes)
Oropetium thomaeum (3 genes)
Oryza brachyantha (3 genes)
Oryza sativa ssp. indica (3 genes)
Oryza sativa ssp. japonica (2 genes)
Phalaenopsis equestris (3 genes)
Phyllostachys edulis (4 genes)
Physcomitrium patens (2 genes)
Picea abies (6 genes)
Populus trichocarpa (4 genes)
Saccharum spontaneum (10 genes)
Selaginella moellendorffii (6 genes)
Setaria italica (3 genes)
Solanum lycopersicum (3 genes)
Sorghum bicolor (3 genes)
Spirodela polyrhiza (5 genes)
Triticum aestivum (9 genes)
Triticum turgidum (6 genes)
Vitis vinifera (3 genes)
Zea mays B73 (3 genes)
Zea mays B104 (5 genes)
Zea mays PH207 (5 genes)
Zostera marina (1 genes)
Zoysia japonica ssp. nagirizaki (3 genes)

Program Settings