Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Zm00007a00049707	Zea mays B104	HOM04x5M005046	ORTHO04x5M006164	3.3e-171	603.6	299	100.0
Zm00001d005157	Zea mays B73	HOM04x5M005046	ORTHO04x5M006164	4.4e-168	593.2	301	98.7
Zm00008a008470	Zea mays PH207	HOM04x5M005046	ORTHO04x5M006164	1.3e-164	581.6	331	89.7
Sobic.002G112700	Sorghum bicolor	HOM04x5M005046	ORTHO04x5M006164	9.5e-163	575.5	330	88.5
Misin03G098200	Miscanthus sinensis	HOM04x5M005046	ORTHO04x5M006164	2.8e-162	573.9	330	88.5
Misin04G109200	Miscanthus sinensis	HOM04x5M005046	ORTHO04x5M006164	8.1e-162	572.4	330	87.9
Sspon.02G0020200-1A	Saccharum spontaneum	HOM04x5M005046	ORTHO04x5M006164	1.1e-161	572.0	327	88.7
Seita.2G110200	Setaria italica	HOM04x5M005046	ORTHO04x5M006164	5.6e-155	549.7	330	84.5
PH01002232G0310	Phyllostachys edulis	HOM04x5M005046	ORTHO04x5M006164	5.8e-152	539.7	333	82.6
Bradi1g29020	Brachypodium distachyon	HOM04x5M005046	ORTHO04x5M006164	1.9e-150	534.6	333	81.4
OB07G13280	Oryza brachyantha	HOM04x5M005046	ORTHO04x5M006164	1.6e-149	531.6	331	82.2
Oropetium_20150105_11454	Oropetium thomaeum	HOM04x5M005046	ORTHO04x5M006164	1.0e-148	528.9	316	84.2
LOC_Os07g07260	Oryza sativa ssp. japonica	HOM04x5M005046	ORTHO04x5M006164	3.0e-148	527.3	331	81.6
OsR498G0713585300.01	Oryza sativa ssp. indica	HOM04x5M005046	ORTHO04x5M006164	3.0e-148	527.3	331	81.6
TraesCS3A02G076400	Triticum aestivum	HOM04x5M005046	ORTHO04x5M006164	5.6e-147	523.1	335	80.0
TraesCS3B02G090300	Triticum aestivum	HOM04x5M005046	ORTHO04x5M006164	1.3e-146	521.9	335	80.0
HORVU3Hr1G013640	Hordeum vulgare	HOM04x5M005046	ORTHO04x5M006164	2.1e-146	521.2	335	80.0
LP027001	Lolium perenne	HOM04x5M005046	ORTHO04x5M006164	6.2e-146	519.6	333	79.6
TraesCS3D02G076500	Triticum aestivum	HOM04x5M005046	ORTHO04x5M006164	1.8e-145	518.1	335	79.4
Sspon.02G0020200-3C	Saccharum spontaneum	HOM04x5M005046	ORTHO04x5M006164	1.7e-143	511.5	336	80.1
p5.00_sc00006_p0154	Elaeis guineensis	HOM04x5M005046	ORTHO04x5M006164	6.6e-140	499.6	330	77.0
CALSI_Maker00005878	Calamus simplicifolius	HOM04x5M005046	ORTHO04x5M006164	8.1e-138	492.7	332	75.3
Aco003438	Ananas comosus	HOM04x5M005046	ORTHO04x5M006164	1.2e-136	488.8	334	74.3
evm.TU.AsparagusV1_07.3669.V1.1	Asparagus officinalis	HOM04x5M005046	ORTHO04x5M006164	2.0e-136	488.0	328	75.0
Ma02_g07730	Musa acuminata	HOM04x5M005046	ORTHO04x5M006164	4.3e-131	470.3	332	72.6
Potri.001G087400	Populus trichocarpa	HOM04x5M005046	ORTHO04x5M006164	4.8e-130	466.8	332	71.4
Potri.003G143700	Populus trichocarpa	HOM04x5M005046	ORTHO04x5M006164	3.1e-129	464.2	332	71.7
GSVIVG01019608001	Vitis vinifera	HOM04x5M005046	ORTHO04x5M006164	6.9e-129	463.0	330	70.3
Spipo4G0085100	Spirodela polyrhiza	HOM04x5M005046	ORTHO04x5M006164	1.7e-127	458.4	330	69.4
PEQU_08732	Phalaenopsis equestris	HOM04x5M005046	ORTHO04x5M006164	4.9e-127	456.8	330	69.4
Solyc08g082830.2	Solanum lycopersicum	HOM04x5M005046	ORTHO04x5M006164	3.2e-126	454.1	330	69.1
Zosma8g00780	Zostera marina	HOM04x5M005046	ORTHO04x5M006164	1.6e-122	441.8	291	73.9
TRITD3Av1G021090	Triticum turgidum	HOM04x5M005046	ORTHO04x5M006164	5.8e-120	433.3	305	75.4
AT1G55090	Arabidopsis thaliana	HOM04x5M005046	ORTHO04x5M006164	3.8e-119	430.6	330	65.5
TRITD3Bv1G024720	Triticum turgidum	HOM04x5M005046	ORTHO04x5M006164	3.8e-119	430.6	305	75.1
ATR1098G082	Amborella trichopoda	HOM04x5M005046	ORTHO04x5M006164	9.7e-115	416.0	291	69.1
Pp3c17_21910	Physcomitrium patens	HOM04x5M005046	ORTHO04x5M006164	5.3e-105	383.6	336	61.0
Mapoly0035s0052	Marchantia polymorpha	HOM04x5M005046	ORTHO04x5M006164	2.6e-104	381.3	328	59.8
ASH_gene8283	Apostasia shenzhenica	HOM04x5M005046	ORTHO04x5M006164	1.0e-103	379.4	256	73.0
gene29750	Selaginella moellendorffii	HOM04x5M005046	ORTHO04x5M006164	2.2e-103	378.3	329	58.1
gene17841	Selaginella moellendorffii	HOM04x5M005046	ORTHO04x5M006164	5.0e-103	377.1	330	58.2
PAB00015820	Picea abies	HOM04x5M005046	ORTHO04x5M006164	9.4e-102	372.9	331	58.6
PH01000031G0760	Phyllostachys edulis	HOM04x5M005046	ORTHO04x5M006164	1.2e-93	345.9	181	93.9
MCO17G006	Micromonas commoda	HOM04x5M005046	ORTHO04x5M006164	1.6e-93	345.5	291	59.1
gene12860	Selaginella moellendorffii	HOM04x5M005046	ORTHO04x5M006164	4.0e-92	340.9	293	58.7
gene4078	Selaginella moellendorffii	HOM04x5M005046	ORTHO04x5M006164	8.8e-92	339.7	293	58.4
Sspon.02G0020200-2B	Saccharum spontaneum	HOM04x5M005046	ORTHO04x5M006164	2.2e-87	325.1	163	98.8
Cre10.g435250	Chlamydomonas reinhardtii	HOM04x5M005046	ORTHO04x5M006164	1.6e-85	318.9	294	55.1
PH01000031G0750	Phyllostachys edulis	HOM04x5M005046	ORTHO04x5M006164	2.0e-51	205.7	120	84.2
Zjn_sc00077.1.g00140.1.am.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M005046	ORTHO04x5M006164	9.9e-27	123.6	74	82.4
Solyc06g071240.1	Solanum lycopersicum	HOM04x5M005046	ORTHO04x5M006164	6.4e-18	94.4	114	47.4

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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