Monocots PLAZA 4.5 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Zm00007a00042480	Zea mays B104	HOM04x5M002100	ORTHO04x5M012064	7.6e-81	302.4	145	100.0
Zm00001d023481	Zea mays B73	HOM04x5M002100	ORTHO04x5M003001	1.9e-31	138.3	117	60.7
Zm00007a00041536	Zea mays B104	HOM04x5M000425	ORTHO04x5M012064	2.5e-31	137.9	108	67.6
Zm00007a00044249	Zea mays B104	HOM04x5M002100	ORTHO04x5M003001	5.0e-24	113.6	57	91.2
Zm00007a00051250	Zea mays B104	HOM04x5M006206	ORTHO04x5M007588	7.9e-22	106.3	198	40.4
Zm00008a024139	Zea mays PH207	HOM04x5M000425	ORTHO04x5M012064	1.9e-15	85.1	63	71.4
Zm00001d035984	Zea mays B73	HOM04x5M000425	ORTHO04x5M012064	4.2e-15	84.0	56	75.0
Sspon.05G0020530-1A	Saccharum spontaneum	HOM04x5M000293	ORTHO04x5M001858	3.6e-06	54.3	32	75.0
PH01000660G0090	Phyllostachys edulis	HOM04x5M000293	ORTHO04x5M001858	6.1e-06	53.5	51	52.9
Zm00001d053053	Zea mays B73	HOM04x5M006206	ORTHO04x5M007588	6.1e-06	53.5	44	56.8
Zm00001d005019	Zea mays B73	HOM04x5M000293	ORTHO04x5M001858	8.0e-06	53.1	50	54.0
Zm00007a00027456	Zea mays B104	HOM04x5M000293	ORTHO04x5M001858	8.0e-06	53.1	50	54.0
Zm00008a008380	Zea mays PH207	HOM04x5M000293	ORTHO04x5M001858	8.0e-06	53.1	50	54.0

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment