Monocots PLAZA 4.5 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Zm00007a00029927	Zea mays B104	HOM04x5M002570	ORTHO04x5M002687	7.8e-49	196.1	148	100.0
Misin13G182000	Miscanthus sinensis	HOM04x5M002570	ORTHO04x5M002687	8.7e-24	112.8	120	52.5
Sobic.007G209500	Sorghum bicolor	HOM04x5M002570	ORTHO04x5M002687	8.7e-24	112.8	120	52.5
Zm00001d031454	Zea mays B73	HOM04x5M002570	ORTHO04x5M002687	8.7e-24	112.8	120	52.5
Zm00007a00022852	Zea mays B104	HOM04x5M002570	ORTHO04x5M002687	8.7e-24	112.8	120	52.5
Zm00008a003238	Zea mays PH207	HOM04x5M002570	ORTHO04x5M002687	8.7e-24	112.8	120	52.5
Misin07G233600	Miscanthus sinensis	HOM04x5M002570	ORTHO04x5M002687	7.3e-23	109.8	120	50.8
Sspon.06G0001740-1A	Saccharum spontaneum	HOM04x5M002570	ORTHO04x5M002687	2.1e-22	108.2	120	50.8
Sspon.06G0001740-2D	Saccharum spontaneum	HOM04x5M002570	ORTHO04x5M002687	2.1e-22	108.2	120	50.8
Seita.6G206100	Setaria italica	HOM04x5M002570	ORTHO04x5M002687	5.8e-20	100.1	120	47.5
TraesCS7B02G144300	Triticum aestivum	HOM04x5M002570	ORTHO04x5M002687	2.0e-12	75.1	123	41.5
TraesCS7A02G247200	Triticum aestivum	HOM04x5M002570	ORTHO04x5M002687	9.9e-12	72.8	123	40.7
HORVU7Hr1G050770	Hordeum vulgare	HOM04x5M002570	ORTHO04x5M002687	1.7e-11	72.0	123	40.7
TraesCS7D02G245800	Triticum aestivum	HOM04x5M002570	ORTHO04x5M002687	2.9e-11	71.2	123	39.8
MisinT266000	Miscanthus sinensis	HOM04x5M002570	ORTHO04x5M002687	3.2e-10	67.8	133	36.1
OB09G21390	Oryza brachyantha	HOM04x5M002570	ORTHO04x5M002687	9.3e-10	66.2	116	37.9
Sspon.02G0037080-1B	Saccharum spontaneum	HOM04x5M002570	ORTHO04x5M002687	9.3e-10	66.2	133	36.1
Sspon.02G0037080-3D	Saccharum spontaneum	HOM04x5M002570	ORTHO04x5M002687	9.3e-10	66.2	133	36.1
Sspon.02G0037080-2C	Saccharum spontaneum	HOM04x5M002570	ORTHO04x5M002687	9.3e-10	66.2	133	36.1
Zm00001d020947	Zea mays B73	HOM04x5M002570	ORTHO04x5M002687	3.5e-09	64.3	116	38.8
Zm00007a00035265	Zea mays B104	HOM04x5M002570	ORTHO04x5M002687	3.5e-09	64.3	116	38.8
Zm00008a028437	Zea mays PH207	HOM04x5M002570	ORTHO04x5M002687	3.5e-09	64.3	116	38.8
Zjn_sc00008.1.g09320.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M002412	ORTHO04x5M002551	4.6e-09	63.9	117	37.6
Oropetium_20150105_05500	Oropetium thomaeum	HOM04x5M002570	ORTHO04x5M002687	1.0e-08	62.8	115	36.5
Sobic.002G248600	Sorghum bicolor	HOM04x5M002570	ORTHO04x5M002687	1.3e-08	62.4	116	37.9
Bradi4g33820	Brachypodium distachyon	HOM04x5M002570	ORTHO04x5M002687	1.8e-08	62.0	120	35.8
Seita.2G254700	Setaria italica	HOM04x5M002570	ORTHO04x5M002687	1.8e-08	62.0	112	38.4
Misin04G229900	Miscanthus sinensis	HOM04x5M002570	ORTHO04x5M002687	6.7e-08	60.1	116	37.1
LOC_Os08g39980	Oryza sativa ssp. japonica	HOM04x5M002570	ORTHO04x5M002687	1.1e-07	59.3	130	34.6
TraesCS5D02G274400	Triticum aestivum	HOM04x5M002570	ORTHO04x5M002687	1.5e-07	58.9	112	36.6
OsR498G0816445800.01	Oryza sativa ssp. indica	HOM04x5M002570	ORTHO04x5M002687	1.9e-07	58.5	109	35.8
TraesCS5A02G266600	Triticum aestivum	HOM04x5M002570	ORTHO04x5M002687	4.3e-07	57.4	112	35.7
LOC_Os09g31454	Oryza sativa ssp. japonica	HOM04x5M002570	ORTHO04x5M002687	5.6e-07	57.0	99	37.4
OsR498G0917730800.01	Oryza sativa ssp. indica	HOM04x5M002570	ORTHO04x5M002687	5.6e-07	57.0	99	37.4
HORVU5Hr1G073540	Hordeum vulgare	HOM04x5M002570	ORTHO04x5M002687	1.6e-06	55.5	122	35.2
LP013034	Lolium perenne	HOM04x5M002570	ORTHO04x5M002687	2.1e-06	55.1	99	35.4
Bradi3g40060	Brachypodium distachyon	HOM04x5M002570	ORTHO04x5M002687	2.8e-06	54.7	122	32.0
HORVU5Hr1G073580	Hordeum vulgare	HOM04x5M002570	ORTHO04x5M002687	2.8e-06	54.7	112	34.8
Aco000751	Ananas comosus	HOM04x5M002570	ORTHO04x5M002687	6.2e-06	53.5	111	35.1

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment