Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Zm00007a00022540	Zea mays B104	HOM04x5M006206	ORTHO04x5M007588	1.5e-94	348.2	185	100.0
Zm00001d023481	Zea mays B73	HOM04x5M002100	ORTHO04x5M003001	1.1e-84	315.5	169	99.4
Zm00001d053053	Zea mays B73	HOM04x5M006206	ORTHO04x5M007588	1.4e-84	315.1	168	100.0
Zm00001d008984	Zea mays B73	HOM04x5M006206	ORTHO04x5M007588	8.2e-72	272.7	176	85.8
Zm00007a00003197	Zea mays B104	HOM04x5M006206	ORTHO04x5M007588	8.2e-72	272.7	176	85.8
Misin05G014800	Miscanthus sinensis	HOM04x5M006206	ORTHO04x5M007588	1.4e-68	261.9	154	91.6
Sobic.003G010900	Sorghum bicolor	HOM04x5M006206	ORTHO04x5M007588	7.2e-68	259.6	154	91.6
Misin06G004400	Miscanthus sinensis	HOM04x5M006206	ORTHO04x5M007588	3.6e-67	257.3	176	80.7
Seita.5G011900	Setaria italica	HOM04x5M006206	ORTHO04x5M007588	3.0e-66	254.2	176	79.0
Pgl_GLEAN_10015002	Cenchrus americanus	HOM04x5M006206	ORTHO04x5M007588	1.1e-65	252.3	176	77.3
Bradi2g07530	Brachypodium distachyon	HOM04x5M006206	ORTHO04x5M007588	1.3e-61	238.8	176	74.4
Zm00007a00044249	Zea mays B104	HOM04x5M002100	ORTHO04x5M003001	3.8e-61	237.3	126	100.0
LP011991	Lolium perenne	HOM04x5M006206	ORTHO04x5M007588	1.2e-59	232.3	174	72.4
Zm00007a00051250	Zea mays B104	HOM04x5M006206	ORTHO04x5M007588	6.1e-59	229.9	149	85.2
OsR498G0100462700.01	Oryza sativa ssp. indica	HOM04x5M006206	ORTHO04x5M007588	1.0e-58	229.2	154	79.2
PH01001074G0520	Phyllostachys edulis	HOM04x5M006206	ORTHO04x5M007588	1.8e-58	228.4	150	82.7
TraesCS3B02G178300	Triticum aestivum	HOM04x5M006206	ORTHO04x5M007588	1.8e-58	228.4	152	80.3
TRITD3Bv1G068180	Triticum turgidum	HOM04x5M006206	ORTHO04x5M007588	1.8e-58	228.4	152	80.3
LOC_Os01g12670	Oryza sativa ssp. japonica	HOM04x5M006206	ORTHO04x5M007588	2.3e-58	228.0	154	78.6
TraesCS3A02G151700	Triticum aestivum	HOM04x5M006206	ORTHO04x5M007588	2.3e-58	228.0	152	80.3
TraesCS3D02G159300	Triticum aestivum	HOM04x5M006206	ORTHO04x5M007588	6.7e-58	226.5	152	78.9
Zm00001d052675	Zea mays B73	HOM04x5M000158	ORTHO04x5M000106	6.7e-58	226.5	127	95.3
HORVU3Hr1G030790	Hordeum vulgare	HOM04x5M006206	ORTHO04x5M007588	3.3e-57	224.2	152	78.3
Oropetium_20150105_17822	Oropetium thomaeum	HOM04x5M006206	ORTHO04x5M007588	1.0e-53	212.6	204	59.8
TRITD3Av1G062820	Triticum turgidum	HOM04x5M006206	ORTHO04x5M007588	4.1e-47	190.7	125	80.0
Zm00008a030361	Zea mays PH207	HOM04x5M006206	ORTHO04x5M007588	1.2e-41	172.6	126	80.2
Zjn_sc00043.1.g04510.1.sm.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M006206	ORTHO04x5M007588	4.1e-39	164.1	112	75.0
ASH_gene3685	Apostasia shenzhenica	HOM04x5M006206	ORTHO04x5M007588	9.1e-39	162.9	174	51.7
p5.00_sc00050_p0091	Elaeis guineensis	HOM04x5M006206	ORTHO04x5M007588	3.5e-38	161.0	152	58.6
ATR0626G352	Amborella trichopoda	HOM04x5M006206	ORTHO04x5M007588	7.2e-36	153.3	153	54.9
p5.00_sc00438_p0003	Elaeis guineensis	HOM04x5M006206	ORTHO04x5M007588	1.2e-35	152.5	152	57.2
Ma09_g29510	Musa acuminata	HOM04x5M006206	ORTHO04x5M007588	1.2e-35	152.5	152	56.6
PEQU_13864	Phalaenopsis equestris	HOM04x5M006206	ORTHO04x5M007588	8.0e-35	149.8	152	55.3
GSVIVG01027010001	Vitis vinifera	HOM04x5M006206	ORTHO04x5M007588	3.0e-34	147.9	174	48.9
Aco010755	Ananas comosus	HOM04x5M006206	ORTHO04x5M007588	1.2e-33	146.0	162	53.7
Spipo26G0009200	Spirodela polyrhiza	HOM04x5M006206	ORTHO04x5M007588	1.1e-31	139.4	142	57.7
Potri.014G091400	Populus trichocarpa	HOM04x5M006206	ORTHO04x5M007588	5.4e-31	137.1	174	47.1
Solyc01g095230.2	Solanum lycopersicum	HOM04x5M006206	ORTHO04x5M007588	2.0e-30	135.2	174	47.7
AT2G46200	Arabidopsis thaliana	HOM04x5M006206	ORTHO04x5M007588	8.6e-29	129.8	166	45.8
CALSI_Maker00046687	Calamus simplicifolius	HOM04x5M006206	ORTHO04x5M007588	1.6e-27	125.6	148	51.4
evm.TU.AsparagusV1_06.1391.V1.1	Asparagus officinalis	HOM04x5M006206	ORTHO04x5M007588	8.9e-26	119.8	148	50.0
OB01G18170	Oryza brachyantha	HOM04x5M006206	ORTHO04x5M007588	8.9e-26	119.8	125	54.4
Mapoly0001s0322	Marchantia polymorpha	HOM04x5M006206	ORTHO04x5M007588	2.5e-20	101.7	141	44.7
Pp3c4_26280	Physcomitrium patens	HOM04x5M006206	ORTHO04x5M007588	4.7e-19	97.4	142	40.8
gene25085	Selaginella moellendorffii	HOM04x5M006206	ORTHO04x5M007588	8.9e-18	93.2	171	34.5
PAB00044746	Picea abies	HOM04x5M006206	ORTHO04x5M007588	5.8e-17	90.5	103	48.5
gene23912	Selaginella moellendorffii	HOM04x5M006206	ORTHO04x5M007588	4.9e-16	87.4	171	33.9
Zosma14g00780	Zostera marina	HOM04x5M006206	ORTHO04x5M007588	3.4e-09	64.7	155	36.1
Zjn_sc00038.1.g02030.1.sm.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M000928	ORTHO04x5M012458	5.8e-09	63.9	45	68.9
gene10511	Selaginella moellendorffii	HOM04x5M006206	ORTHO04x5M007588	7.0e-07	57.0	114	36.8
Misin14G125400	Miscanthus sinensis	HOM04x5M000928	ORTHO04x5M000982	6.0e-06	53.9	74	43.2
Potri.014G123200	Populus trichocarpa	HOM04x5M000928	ORTHO04x5M000982	6.0e-06	53.9	74	43.2
Sobic.008G127100	Sorghum bicolor	HOM04x5M000928	ORTHO04x5M000982	6.0e-06	53.9	74	43.2
Sspon.02G0028480-1A	Saccharum spontaneum	HOM04x5M000928	ORTHO04x5M000982	6.0e-06	53.9	74	43.2
Sspon.02G0028480-2C	Saccharum spontaneum	HOM04x5M000928	ORTHO04x5M000982	6.0e-06	53.9	74	43.2
Zm00001d041620	Zea mays B73	HOM04x5M000928	ORTHO04x5M000982	6.0e-06	53.9	74	43.2
Zm00007a00028906	Zea mays B104	HOM04x5M000928	ORTHO04x5M000982	6.0e-06	53.9	74	43.2
Zm00008a012361	Zea mays PH207	HOM04x5M000928	ORTHO04x5M000982	6.0e-06	53.9	74	43.2

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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