Interactive Phylogenetics Module

Gene Id
Zm00001d043721

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Include Gene ID Organism Homologous gene familyOrthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001d043721 Zea mays B73 HOM04x5M001635 ORTHO04x5M001655 0.0e+00 1373.2 724 100.0
Zm00008a014036 Zea mays PH207 HOM04x5M001635 ORTHO04x5M001655 0.0e+00 1373.2 724 100.0
Zm00007a00023159 Zea mays B104 HOM04x5M001635 ORTHO04x5M001655 0.0e+00 1369.8 724 99.7
Sobic.003G271400 Sorghum bicolor HOM04x5M001635 ORTHO04x5M001655 0.0e+00 1234.9 727 90.9
Sspon.03G0004960-2B Saccharum spontaneum HOM04x5M001635 ORTHO04x5M001655 0.0e+00 1202.6 699 91.7
Sspon.03G0004960-1A Saccharum spontaneum HOM04x5M001635 ORTHO04x5M001655 0.0e+00 1114.0 707 86.0
Pgl_GLEAN_10020851 Cenchrus americanus HOM04x5M001635 ORTHO04x5M001655 0.0e+00 1108.2 664 86.1
Seita.5G287500 Setaria italica HOM04x5M001635 ORTHO04x5M001655 0.0e+00 1106.7 656 87.8
Misin06G245200 Miscanthus sinensis HOM04x5M001635 ORTHO04x5M001655 2.5e-310 1067.0 724 81.1
Misin05G261200 Miscanthus sinensis HOM04x5M001635 ORTHO04x5M001655 2.8e-309 1063.5 627 91.2
TraesCS3D02G254500 Triticum aestivum HOM04x5M001635 ORTHO04x5M001655 2.7e-296 1020.4 721 76.0
TraesCS3B02G285500 Triticum aestivum HOM04x5M001635 ORTHO04x5M001655 3.9e-295 1016.5 719 75.7
TRITD3Bv1G148710 Triticum turgidum HOM04x5M001635 ORTHO04x5M001655 3.9e-295 1016.5 719 75.7
Bradi2g47670 Brachypodium distachyon HOM04x5M001635 ORTHO04x5M001655 3.5e-288 993.4 713 75.3
TraesCS3A02G253600 Triticum aestivum HOM04x5M001635 ORTHO04x5M001655 6.3e-285 982.6 660 77.4
OsR498G0101847100.01 Oryza sativa ssp. indica HOM04x5M001635 ORTHO04x5M001655 1.4e-279 964.9 715 74.0
OB01G37140 Oryza brachyantha HOM04x5M001635 ORTHO04x5M001655 2.5e-278 960.7 727 72.9
Oropetium_20150105_26368 Oropetium thomaeum HOM04x5M001635 ORTHO04x5M001655 1.8e-263 911.4 610 78.4
p5.00_sc00130_p0014 Elaeis guineensis HOM04x5M001635 ORTHO04x5M001655 1.6e-232 808.5 650 66.6
PH01000527G0910 Phyllostachys edulis HOM04x5M001635 ORTHO04x5M001655 1.7e-226 788.5 563 75.3
CALSI_Maker00049314 Calamus simplicifolius HOM04x5M001635 ORTHO04x5M001655 5.0e-226 786.9 685 63.1
Ma08_g26180 Musa acuminata HOM04x5M001635 ORTHO04x5M001655 3.3e-225 784.3 682 62.6
evm.TU.AsparagusV1_05.1619.V1.1 Asparagus officinalis HOM04x5M001635 ORTHO04x5M001655 6.8e-215 750.0 660 63.6
Zjn_sc00011.1.g01090.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM04x5M001635 ORTHO04x5M001655 2.1e-211 738.4 704 60.5
LP039746 Lolium perenne HOM04x5M001635 ORTHO04x5M001655 2.5e-209 731.5 498 77.5
TRITD3Av1G169960 Triticum turgidum HOM04x5M001635 ORTHO04x5M001655 6.2e-208 726.9 511 75.1
Spipo5G0034800 Spirodela polyrhiza HOM04x5M001635 ORTHO04x5M001655 6.6e-202 706.8 638 60.8
GSVIVG01023836001 Vitis vinifera HOM04x5M001635 ORTHO04x5M001655 1.1e-196 689.5 644 58.9
ATR0605G301 Amborella trichopoda HOM04x5M001635 ORTHO04x5M001655 3.5e-195 684.5 681 55.9
ASH_gene16076 Apostasia shenzhenica HOM04x5M001635 ORTHO04x5M001655 7.4e-193 676.8 650 57.4
PH01000783G0570 Phyllostachys edulis HOM04x5M001635 ORTHO04x5M001655 1.3e-192 676.0 468 77.1
PEQU_15165 Phalaenopsis equestris HOM04x5M001635 ORTHO04x5M001655 4.2e-188 661.0 609 60.3
AT4G35440 Arabidopsis thaliana HOM04x5M001635 ORTHO04x5M001655 2.6e-182 641.7 668 54.9
HORVU3Hr1G066240 Hordeum vulgare HOM04x5M001635 ORTHO04x5M001655 4.8e-176 620.9 428 75.5
LOC_Os01g50860 Oryza sativa ssp. japonica HOM04x5M001635 ORTHO04x5M001655 1.4e-162 576.2 417 73.9
Mapoly0001s0400 Marchantia polymorpha HOM04x5M001635 ORTHO04x5M001655 5.3e-159 564.3 679 48.2
Pp3c13_4410 Physcomitrium patens HOM04x5M001635 ORTHO04x5M001655 3.7e-152 541.6 696 46.6
Aco017096 Ananas comosus HOM04x5M001635 ORTHO04x5M001655 6.7e-146 520.8 469 62.7
gene15803 Selaginella moellendorffii HOM04x5M001635 ORTHO04x5M001655 3.0e-138 495.4 706 43.1
gene33693 Selaginella moellendorffii HOM04x5M001635 ORTHO04x5M001655 6.8e-138 494.2 706 42.9
PAB00016374 Picea abies HOM04x5M001635 ORTHO04x5M001655 4.2e-132 474.9 375 65.3
Spipo12G0024700 Spirodela polyrhiza HOM04x5M001635 ORTHO04x5M001655 9.2e-119 430.6 637 42.1
Ma10_g31480 Musa acuminata HOM04x5M001635 ORTHO04x5M001655 1.9e-116 422.9 623 42.9
Mapoly0179s0012 Marchantia polymorpha HOM04x5M001635 ORTHO04x5M001655 1.9e-116 422.9 727 38.7
p5.00_sc00198_p0029 Elaeis guineensis HOM04x5M001635 ORTHO04x5M001655 3.3e-116 422.2 691 40.7
Aco000832 Ananas comosus HOM04x5M001635 ORTHO04x5M001655 5.6e-116 421.4 634 41.5
PEQU_24498 Phalaenopsis equestris HOM04x5M001635 ORTHO04x5M001655 9.5e-116 420.6 630 41.0
GSVIVG01014852001 Vitis vinifera HOM04x5M001635 ORTHO04x5M001655 9.5e-116 420.6 662 41.1
Zosma51g00410 Zostera marina HOM04x5M001635 ORTHO04x5M001655 4.0e-114 415.2 712 38.9
evm.TU.AsparagusV1_05.2119.V1.1 Asparagus officinalis HOM04x5M001635 ORTHO04x5M001655 5.2e-114 414.8 697 40.6
Sobic.007G218000 Sorghum bicolor HOM04x5M001635 ORTHO04x5M001655 2.0e-113 412.9 652 40.5
Solyc10g005690.2 Solanum lycopersicum HOM04x5M001635 ORTHO04x5M001655 2.0e-113 412.9 720 38.9
Sspon.06G0000980-2B Saccharum spontaneum HOM04x5M001635 ORTHO04x5M001655 2.6e-113 412.5 652 40.5
Misin07G221400 Miscanthus sinensis HOM04x5M001635 ORTHO04x5M001655 7.5e-113 411.0 652 40.8
Zm00007a00037310 Zea mays B104 HOM04x5M001635 ORTHO04x5M001655 9.8e-113 410.6 660 39.5
Pgl_GLEAN_10012622 Cenchrus americanus HOM04x5M001635 ORTHO04x5M001655 1.7e-112 409.8 689 39.0
Zm00001d031318 Zea mays B73 HOM04x5M001635 ORTHO04x5M001655 1.7e-112 409.8 627 40.5
TraesCS7A02G240700 Triticum aestivum HOM04x5M001635 ORTHO04x5M001655 2.2e-112 409.5 656 39.9
TRITD7Av1G088580 Triticum turgidum HOM04x5M001635 ORTHO04x5M001655 2.2e-112 409.5 656 39.9
Aco015315 Ananas comosus HOM04x5M001635 ORTHO04x5M001655 4.9e-112 408.3 670 40.1
ASH_gene15628 Apostasia shenzhenica HOM04x5M001635 ORTHO04x5M001655 4.9e-112 408.3 686 38.3
TraesCS7D02G239700 Triticum aestivum HOM04x5M001635 ORTHO04x5M001655 8.3e-112 407.5 656 39.8
Seita.6G198100 Setaria italica HOM04x5M001635 ORTHO04x5M001655 1.1e-111 407.1 712 38.8
ATR0598G243 Amborella trichopoda HOM04x5M001635 ORTHO04x5M001655 1.4e-111 406.8 715 37.3
p5.00_sc00055_p0069 Elaeis guineensis HOM04x5M001635 ORTHO04x5M001655 1.4e-111 406.8 700 39.4
TraesCS7B02G136300 Triticum aestivum HOM04x5M001635 ORTHO04x5M001655 4.1e-111 405.2 656 39.6
Pp3c23_11730 Physcomitrium patens HOM04x5M001635 ORTHO04x5M001655 1.2e-110 403.7 715 37.9
TRITD7Bv1G062710 Triticum turgidum HOM04x5M001635 ORTHO04x5M001655 1.2e-110 403.7 656 39.6
Bradi3g39350 Brachypodium distachyon HOM04x5M001635 ORTHO04x5M001655 2.7e-110 402.5 652 39.7
Zjn_sc00106.1.g00090.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM04x5M001635 ORTHO04x5M001655 2.7e-110 402.5 677 39.1
Solyc01g112310.2 Solanum lycopersicum HOM04x5M001635 ORTHO04x5M001655 3.5e-110 402.1 432 52.3
AT1G55620 Arabidopsis thaliana HOM04x5M001635 ORTHO04x5M001655 7.8e-110 401.0 628 41.1
Solyc07g066210.2 Solanum lycopersicum HOM04x5M001635 ORTHO04x5M001655 7.8e-110 401.0 613 41.1
Pp3c24_12700 Physcomitrium patens HOM04x5M001635 ORTHO04x5M001655 1.0e-109 400.6 735 37.1
OB08G26380 Oryza brachyantha HOM04x5M001635 ORTHO04x5M001655 1.7e-109 399.8 632 40.2
LP022520 Lolium perenne HOM04x5M001635 ORTHO04x5M001655 2.3e-109 399.4 623 40.3
LP024409 Lolium perenne HOM04x5M001635 ORTHO04x5M001655 6.6e-109 397.9 659 40.1
LOC_Os08g38980 Oryza sativa ssp. japonica HOM04x5M001635 ORTHO04x5M001655 6.6e-109 397.9 626 39.9
OsR498G0816395300.01 Oryza sativa ssp. indica HOM04x5M001635 ORTHO04x5M001655 6.6e-109 397.9 626 39.9
HORVU6Hr1G071200 Hordeum vulgare HOM04x5M001635 ORTHO04x5M001655 1.1e-108 397.1 686 39.1
TRITD6Bv1G167010 Triticum turgidum HOM04x5M001635 ORTHO04x5M001655 1.5e-108 396.7 685 39.6
Pgl_GLEAN_10010186 Cenchrus americanus HOM04x5M001635 ORTHO04x5M001655 3.3e-108 395.6 663 38.9
CALSI_Maker00049403 Calamus simplicifolius HOM04x5M001635 ORTHO04x5M001655 4.3e-108 395.2 687 39.0
TraesCS6D02G264100 Triticum aestivum HOM04x5M001635 ORTHO04x5M001655 4.3e-108 395.2 686 39.4
Potri.001G472700 Populus trichocarpa HOM04x5M001635 ORTHO04x5M001655 5.6e-108 394.8 617 40.5
Seita.1G299300 Setaria italica HOM04x5M001635 ORTHO04x5M001655 1.6e-107 393.3 573 41.9
Oropetium_20150105_19210 Oropetium thomaeum HOM04x5M001635 ORTHO04x5M001655 2.1e-107 392.9 628 39.0
OB02G37640 Oryza brachyantha HOM04x5M001635 ORTHO04x5M001655 4.7e-107 391.7 687 38.6
Sobic.004G257800 Sorghum bicolor HOM04x5M001635 ORTHO04x5M001655 4.7e-107 391.7 615 39.5
Zm00001d017865 Zea mays B73 HOM04x5M001635 ORTHO04x5M001655 8.1e-107 391.0 622 39.7
Zm00007a00011263 Zea mays B104 HOM04x5M001635 ORTHO04x5M001655 8.1e-107 391.0 622 39.7
gene3495 Selaginella moellendorffii HOM04x5M001635 ORTHO04x5M001655 1.1e-106 390.6 700 37.6
Sspon.04G0004760-2B Saccharum spontaneum HOM04x5M001635 ORTHO04x5M001655 1.1e-106 390.6 615 39.5
OsR498G0204665200.01 Oryza sativa ssp. indica HOM04x5M001635 ORTHO04x5M001655 1.4e-106 390.2 690 38.6
Zjn_sc00015.1.g04990.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM04x5M001635 ORTHO04x5M001655 1.4e-106 390.2 572 42.7
Zm00001d017868 Zea mays B73 HOM04x5M001635 ORTHO04x5M001655 1.4e-106 390.2 626 39.9
Zm00007a00011266 Zea mays B104 HOM04x5M001635 ORTHO04x5M001655 1.4e-106 390.2 626 39.9
LOC_Os02g48880 Oryza sativa ssp. japonica HOM04x5M001635 ORTHO04x5M001655 1.8e-106 389.8 690 38.6
Misin13G191700 Miscanthus sinensis HOM04x5M001635 ORTHO04x5M001655 2.0e-105 386.3 421 50.8
Misin08G264900 Miscanthus sinensis HOM04x5M001635 ORTHO04x5M001655 3.4e-105 385.6 615 39.3
Zm00008a022840 Zea mays PH207 HOM04x5M001635 ORTHO04x5M001655 3.4e-105 385.6 552 42.0
Zosma45g00340 Zostera marina HOM04x5M001635 ORTHO04x5M001655 2.2e-104 382.9 638 39.0
TraesCS6B02G312100 Triticum aestivum HOM04x5M001635 ORTHO04x5M001655 2.9e-104 382.5 489 47.4
gene23470 Selaginella moellendorffii HOM04x5M001635 ORTHO04x5M001655 6.4e-104 381.3 700 37.1
PAB00008647 Picea abies HOM04x5M001635 ORTHO04x5M001655 9.2e-103 377.5 606 40.8
Sspon.06G0000980-3C Saccharum spontaneum HOM04x5M001635 ORTHO04x5M001655 1.0e-101 374.0 607 39.5
Zm00008a018024 Zea mays PH207 HOM04x5M001750 ORTHO04x5M001795 6.6e-101 371.3 596 40.6
PH01000212G1260 Phyllostachys edulis HOM04x5M001635 ORTHO04x5M001655 5.6e-100 368.2 621 38.6
Zm00008a003140 Zea mays PH207 HOM04x5M001635 ORTHO04x5M001655 9.5e-100 367.5 579 40.9
Oropetium_20150105_20292 Oropetium thomaeum HOM04x5M001635 ORTHO04x5M001655 2.1e-99 366.3 625 37.9
PH01003535G0210 Phyllostachys edulis HOM04x5M001635 ORTHO04x5M001655 6.2e-99 364.8 527 42.3
TRITD6Av1G178430 Triticum turgidum HOM04x5M001635 ORTHO04x5M001655 3.1e-98 362.5 516 43.2
Sspon.04G0004760-1A Saccharum spontaneum HOM04x5M001635 ORTHO04x5M001655 9.2e-95 350.9 615 37.6
Potri.004G209901 Populus trichocarpa HOM04x5M001635 ORTHO04x5M001655 1.5e-92 343.6 436 48.6
Sspon.06G0000980-1A Saccharum spontaneum HOM04x5M001635 ORTHO04x5M001655 2.1e-91 339.7 652 35.9
Sspon.04G0004760-3C Saccharum spontaneum HOM04x5M001635 ORTHO04x5M001655 1.5e-84 317.0 447 43.2
TraesCS6A02G283600 Triticum aestivum HOM04x5M001635 ORTHO04x5M001655 4.3e-84 315.5 331 53.2
Zm00001d052845 Zea mays B73 HOM04x5M001635 ORTHO04x5M001655 2.2e-80 303.1 402 44.8
Bradi3g56670 Brachypodium distachyon HOM04x5M001635 ORTHO04x5M001655 1.1e-79 300.8 681 33.8
CALSI_Maker00007099 Calamus simplicifolius HOM04x5M001635 ORTHO04x5M001655 1.6e-78 297.0 737 33.5
Solyc01g112300.2 Solanum lycopersicum HOM04x5M001635 ORTHO04x5M001655 1.9e-76 290.0 216 68.1
MCO03G425 Micromonas commoda HOM04x5M001635 ORTHO04x5M001655 1.6e-75 287.0 359 49.0
Misin07G467900 Miscanthus sinensis HOM04x5M001635 ORTHO04x5M001655 3.1e-74 282.7 510 38.4
Sspon.06G0000980-4D Saccharum spontaneum HOM04x5M001635 ORTHO04x5M001655 6.4e-72 275.0 658 32.7
Misin07G220200 Miscanthus sinensis HOM04x5M001635 ORTHO04x5M001655 8.2e-59 231.5 525 34.3
PH01000435G0830 Phyllostachys edulis HOM04x5M001750 ORTHO04x5M001795 9.0e-58 228.0 382 38.2
LP039744 Lolium perenne HOM04x5M001635 ORTHO04x5M001655 3.4e-57 226.1 129 83.7
HORVU7Hr1G049110 Hordeum vulgare HOM04x5M001635 ORTHO04x5M001655 4.1e-50 202.6 398 36.2
Sspon.04G0004760-4D Saccharum spontaneum HOM04x5M001635 ORTHO04x5M001655 4.2e-47 192.6 217 47.5
Zm00001d042835 Zea mays B73 HOM04x5M000030 ORTHO04x5M012510 1.8e-42 177.2 166 68.7
Zm00001d051341 Zea mays B73 HOM04x5M000030 ORTHO04x5M012510 2.6e-41 173.3 161 70.8
Zm00007a00028885 Zea mays B104 HOM04x5M000030 ORTHO04x5M012510 4.5e-41 172.6 166 68.1
Zm00007a00027311 Zea mays B104 HOM04x5M000030 ORTHO04x5M012510 5.5e-39 165.6 160 66.2
Cre01.g037150 Chlamydomonas reinhardtii HOM04x5M001635 ORTHO04x5M001655 7.2e-39 165.2 502 29.5
Zm00001d051050 Zea mays B73 HOM04x5M002289 ORTHO04x5M001655 2.0e-36 157.1 182 48.9
Zm00007a00005054 Zea mays B104 HOM04x5M001635 ORTHO04x5M001655 2.0e-36 157.1 182 48.9
Zjn_sc00007.1.g06530.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM04x5M001635 ORTHO04x5M001655 6.3e-27 125.6 154 44.2
Sspon.03G0004960-3C Saccharum spontaneum HOM04x5M001635 ORTHO04x5M012510 1.5e-23 114.4 102 71.6
PH01000527G0930 Phyllostachys edulis HOM04x5M001635 ORTHO04x5M001655 1.2e-22 111.3 78 71.8
Zm00007a00017168 Zea mays B104 HOM04x5M001750 ORTHO04x5M001795 1.4e-21 107.8 148 48.0
OB03G29070 Oryza brachyantha HOM04x5M001635 ORTHO04x5M001655 1.2e-20 104.8 162 38.3
Zm00007a00020952 Zea mays B104 HOM04x5M001635 ORTHO04x5M001655 2.0e-17 94.0 87 62.1
Oropetium_20150105_26369 Oropetium thomaeum HOM04x5M001635 ORTHO04x5M012510 7.2e-15 85.5 107 54.2
Sspon.04G0004760-1P Saccharum spontaneum HOM04x5M001635 ORTHO04x5M001655 2.8e-14 83.6 168 34.5
Zm00001d020588 Zea mays B73 HOM04x5M002289 ORTHO04x5M030796 2.2e-11 73.9 74 58.1
Zm00007a00037600 Zea mays B104 HOM04x5M002289 ORTHO04x5M031114 1.8e-10 70.9 79 51.9
Zm00008a028148 Zea mays PH207 HOM04x5M002289 ORTHO04x5M030796 1.8e-10 70.9 44 81.8
Zm00008a016711 Zea mays PH207 HOM04x5M001635 ORTHO04x5M031114 2.4e-10 70.5 66 56.1
PAB00009259 Picea abies HOM04x5M001635 ORTHO04x5M001655 3.5e-09 66.6 204 29.4
Zm00001d020635 Zea mays B73 HOM04x5M002289 ORTHO04x5M030493 2.9e-08 63.5 49 67.3
Zm00007a00026665 Zea mays B104 HOM04x5M002289 ORTHO04x5M030493 2.9e-08 63.5 49 67.3
Zm00001d051103 Zea mays B73 HOM04x5M002289 ORTHO04x5M003511 4.3e-07 59.7 35 85.7
Zm00007a00028237 Zea mays B104 HOM04x5M001635 ORTHO04x5M251830 4.3e-07 59.7 156 34.6
Zm00007a00042823 Zea mays B104 HOM04x5M001635 ORTHO04x5M254639 2.8e-06 57.0 111 40.5

Amborella trichopoda (2 genes)
Ananas comosus (3 genes)
Apostasia shenzhenica (2 genes)
Arabidopsis thaliana (2 genes)
Asparagus officinalis (2 genes)
Brachypodium distachyon (3 genes)
Calamus simplicifolius (3 genes)
Cenchrus americanus (3 genes)
Chlamydomonas reinhardtii (1 genes)
Elaeis guineensis (3 genes)
Hordeum vulgare (3 genes)
Lolium perenne (4 genes)
Marchantia polymorpha (2 genes)
Micromonas commoda (1 genes)
Miscanthus sinensis (7 genes)
Musa acuminata (2 genes)
Oropetium thomaeum (4 genes)
Oryza brachyantha (4 genes)
Oryza sativa ssp. indica (3 genes)
Oryza sativa ssp. japonica (3 genes)
Phalaenopsis equestris (2 genes)
Phyllostachys edulis (6 genes)
Physcomitrium patens (3 genes)
Picea abies (3 genes)
Populus trichocarpa (2 genes)
Saccharum spontaneum (12 genes)
Selaginella moellendorffii (4 genes)
Setaria italica (3 genes)
Solanum lycopersicum (4 genes)
Sorghum bicolor (3 genes)
Spirodela polyrhiza (2 genes)
Triticum aestivum (9 genes)
Triticum turgidum (6 genes)
Vitis vinifera (2 genes)
Zea mays B73 (11 genes)
Zea mays B104 (13 genes)
Zea mays PH207 (6 genes)
Zostera marina (2 genes)
Zoysia japonica ssp. nagirizaki (4 genes)

Program Settings