Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Zm00001d043262	Zea mays B73	HOM04x5M006963	ORTHO04x5M008665	7.8e-40	165.2	79	100.0
Zm00007a00045314	Zea mays B104	HOM04x5M006963	ORTHO04x5M008665	2.1e-24	114.0	52	100.0
Misin06G280100	Miscanthus sinensis	HOM04x5M006963	ORTHO04x5M008665	1.5e-19	97.8	72	73.6
Sobic.003G318900	Sorghum bicolor	HOM04x5M006963	ORTHO04x5M008665	7.6e-19	95.5	72	70.8
Sspon.03G0005290-1A	Saccharum spontaneum	HOM04x5M006963	ORTHO04x5M008665	7.6e-19	95.5	72	70.8
Pgl_GLEAN_10000688	Cenchrus americanus	HOM04x5M006963	ORTHO04x5M008665	2.9e-18	93.6	72	68.1
Misin05G294900	Miscanthus sinensis	HOM04x5M006963	ORTHO04x5M008665	3.8e-18	93.2	72	70.8
Sspon.03G0005290-2C	Saccharum spontaneum	HOM04x5M006963	ORTHO04x5M008665	5.0e-18	92.8	72	69.4
Seita.5G341900	Setaria italica	HOM04x5M006963	ORTHO04x5M008665	6.5e-18	92.4	72	68.1
Sspon.03G0005290-1P	Saccharum spontaneum	HOM04x5M006963	ORTHO04x5M008665	1.4e-17	91.3	72	68.1
Zjn_sc00040.1.g01850.1.sm.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M006963	ORTHO04x5M008665	1.4e-17	91.3	72	65.3
Zm00001d012611	Zea mays B73	HOM04x5M006963	ORTHO04x5M008665	1.4e-17	91.3	72	69.4
Zm00007a00042883	Zea mays B104	HOM04x5M006963	ORTHO04x5M008665	1.4e-17	91.3	72	69.4
Zm00008a033103	Zea mays PH207	HOM04x5M006963	ORTHO04x5M008665	1.4e-17	91.3	72	69.4
OB01G42110	Oryza brachyantha	HOM04x5M006963	ORTHO04x5M008665	6.1e-16	85.9	72	62.5
Oropetium_20150105_12735	Oropetium thomaeum	HOM04x5M006963	ORTHO04x5M008665	1.3e-15	84.7	69	65.2
LOC_Os01g57440	Oryza sativa ssp. japonica	HOM04x5M006963	ORTHO04x5M008665	1.8e-15	84.3	72	63.9
TraesCS3B02G351200	Triticum aestivum	HOM04x5M006963	ORTHO04x5M008665	8.7e-15	82.0	52	76.9
TraesCS3D02G315800	Triticum aestivum	HOM04x5M006963	ORTHO04x5M008665	8.7e-15	82.0	52	76.9
TraesCS3A02G315700	Triticum aestivum	HOM04x5M006963	ORTHO04x5M008665	8.7e-15	82.0	52	76.9
TRITD3Bv1G178510	Triticum turgidum	HOM04x5M006963	ORTHO04x5M008665	8.7e-15	82.0	52	76.9
TRITD3Av1G201830	Triticum turgidum	HOM04x5M006963	ORTHO04x5M008665	8.7e-15	82.0	52	76.9
HORVU3Hr1G077010	Hordeum vulgare	HOM04x5M006963	ORTHO04x5M008665	1.5e-14	81.3	52	75.0
OsR498G0102107400.01	Oryza sativa ssp. indica	HOM04x5M006963	ORTHO04x5M008665	3.3e-14	80.1	69	62.3
Bradi2g51880	Brachypodium distachyon	HOM04x5M006963	ORTHO04x5M008665	1.6e-13	77.8	72	58.3
LP000499	Lolium perenne	HOM04x5M006963	ORTHO04x5M008665	6.3e-13	75.9	72	56.9
Spipo7G0003800	Spirodela polyrhiza	HOM04x5M006963	ORTHO04x5M008665	2.6e-11	70.5	52	63.5
Aco020969	Ananas comosus	HOM04x5M006963	ORTHO04x5M008665	1.9e-09	64.3	72	47.2
p5.00_sc00088_p0015	Elaeis guineensis	HOM04x5M006963	ORTHO04x5M008665	1.6e-08	61.2	49	59.2
evm.TU.AsparagusV1_10.220.V1.1	Asparagus officinalis	HOM04x5M006963	ORTHO04x5M008665	2.7e-08	60.5	49	55.1
ATR1132G134	Amborella trichopoda	HOM04x5M006963	ORTHO04x5M008665	3.6e-08	60.1	53	50.9
Potri.013G121700	Populus trichocarpa	HOM04x5M006963	ORTHO04x5M008665	6.1e-08	59.3	72	41.7
PEQU_05527	Phalaenopsis equestris	HOM04x5M006963	ORTHO04x5M008665	1.0e-07	58.5	52	50.0
GSVIVG01000444001	Vitis vinifera	HOM04x5M006963	ORTHO04x5M008665	1.4e-07	58.2	52	50.0
Potri.013G122300	Populus trichocarpa	HOM04x5M006963	ORTHO04x5M008665	6.7e-07	55.8	52	46.2
AT1G27410	Arabidopsis thaliana	HOM04x5M006963	ORTHO04x5M008665	2.5e-06	53.9	53	50.9

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment