Interactive Phylogenetics Module

Gene Id
Zm00001d020948

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Include Gene ID Organism Homologous gene familyOrthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001d020948 Zea mays B73 HOM04x5M002412 ORTHO04x5M002551 9.2e-176 619.0 365 100.0
Zm00007a00035266 Zea mays B104 HOM04x5M002412 ORTHO04x5M002551 9.2e-176 619.0 365 100.0
Sspon.06G0001760-2P Saccharum spontaneum HOM04x5M002412 ORTHO04x5M002551 1.6e-156 555.1 365 90.4
Sobic.002G248700 Sorghum bicolor HOM04x5M002412 ORTHO04x5M002551 4.7e-156 553.5 365 81.9
Misin04G230000 Miscanthus sinensis HOM04x5M002412 ORTHO04x5M002551 2.0e-154 548.1 365 89.9
MisinT266100 Miscanthus sinensis HOM04x5M002412 ORTHO04x5M002551 3.4e-154 547.4 365 85.2
Sspon.06G0001760-1P Saccharum spontaneum HOM04x5M002412 ORTHO04x5M002551 3.4e-154 547.4 365 89.6
Zm00008a009131 Zea mays PH207 HOM04x5M002412 ORTHO04x5M002551 1.1e-147 525.8 363 78.5
Zm00001d006031 Zea mays B73 HOM04x5M002412 ORTHO04x5M002551 8.9e-147 522.7 367 77.9
Zm00007a00028357 Zea mays B104 HOM04x5M002412 ORTHO04x5M002551 3.4e-146 520.8 367 77.7
Zm00001d045948 Zea mays B73 HOM04x5M000039 ORTHO04x5M002551 3.4e-138 494.2 362 75.4
Zm00001d043192 Zea mays B73 HOM04x5M002412 ORTHO04x5M002551 4.2e-128 460.7 353 73.9
Zm00007a00022663 Zea mays B104 HOM04x5M002412 ORTHO04x5M002551 4.2e-128 460.7 353 73.9
Zm00008a028438 Zea mays PH207 HOM04x5M002412 ORTHO04x5M002551 7.9e-127 456.4 363 73.8
TraesCS5D02G274500 Triticum aestivum HOM04x5M002412 ORTHO04x5M002551 1.0e-118 429.5 372 65.9
OsR498G0917731000.01 Oryza sativa ssp. indica HOM04x5M002412 ORTHO04x5M002551 1.8e-118 428.7 378 65.1
TraesCS5B02G266300 Triticum aestivum HOM04x5M002412 ORTHO04x5M002551 2.3e-118 428.3 372 65.9
TRITD5Bv1G149550 Triticum turgidum HOM04x5M002412 ORTHO04x5M002551 2.3e-118 428.3 372 65.9
TraesCS5A02G266700 Triticum aestivum HOM04x5M002412 ORTHO04x5M002551 1.5e-117 425.6 372 65.1
Zm00007a00028008 Zea mays B104 HOM04x5M000039 ORTHO04x5M002551 1.5e-117 425.6 308 76.6
LOC_Os09g31458 Oryza sativa ssp. japonica HOM04x5M002412 ORTHO04x5M002551 1.9e-117 425.2 378 65.1
HORVU5Hr1G073600 Hordeum vulgare HOM04x5M002412 ORTHO04x5M002551 1.6e-116 422.2 372 65.1
PH01001573G0110 Phyllostachys edulis HOM04x5M002412 ORTHO04x5M002551 3.1e-115 417.9 356 64.9
Zjn_sc00008.1.g09320.1.am.mk Zoysia japonica ssp. nagirizaki HOM04x5M002412 ORTHO04x5M002551 9.0e-115 416.4 367 73.0
Bradi4g33830 Brachypodium distachyon HOM04x5M002412 ORTHO04x5M002551 2.6e-114 414.8 374 65.5
LP030105 Lolium perenne HOM04x5M002412 ORTHO04x5M002551 1.7e-113 412.1 376 64.4
TRITD5Av1G160070 Triticum turgidum HOM04x5M002412 ORTHO04x5M002551 1.2e-111 406.0 372 62.9
TraesCS7B02G144200 Triticum aestivum HOM04x5M002412 ORTHO04x5M002551 7.0e-83 310.5 380 49.2
OB08G26970 Oryza brachyantha HOM04x5M002412 ORTHO04x5M002551 9.1e-83 310.1 404 54.0
TraesCS7A02G247300 Triticum aestivum HOM04x5M002412 ORTHO04x5M002551 1.6e-82 309.3 382 49.0
TRITD7Av1G093150 Triticum turgidum HOM04x5M002412 ORTHO04x5M002551 1.6e-82 309.3 382 49.0
TraesCS7D02G245900 Triticum aestivum HOM04x5M002412 ORTHO04x5M002551 2.7e-82 308.5 375 49.3
TRITD7Bv1G067520 Triticum turgidum HOM04x5M002412 ORTHO04x5M002551 2.7e-82 308.5 380 48.9
LP013033 Lolium perenne HOM04x5M002412 ORTHO04x5M002551 1.6e-79 299.3 368 49.2
Seita.2G254800 Setaria italica HOM04x5M002412 ORTHO04x5M002551 9.8e-77 290.0 229 81.2
Zm00008a037452 Zea mays PH207 HOM04x5M002412 ORTHO04x5M002551 5.4e-75 284.3 221 69.7
Zm00001d052895 Zea mays B73 HOM04x5M002412 ORTHO04x5M002551 7.0e-75 283.9 397 47.6
Zm00007a00029929 Zea mays B104 HOM04x5M002412 ORTHO04x5M002551 7.7e-74 280.4 397 47.4
Sspon.06G0001760-1A Saccharum spontaneum HOM04x5M002412 ORTHO04x5M002551 3.2e-72 275.0 317 51.7
Oropetium_20150105_05499 Oropetium thomaeum HOM04x5M002412 ORTHO04x5M002551 5.5e-72 274.2 248 73.4
Misin13G182100 Miscanthus sinensis HOM04x5M002412 ORTHO04x5M002551 7.2e-72 273.9 390 46.7
Sobic.007G209400 Sorghum bicolor HOM04x5M002412 ORTHO04x5M002551 2.1e-71 272.3 398 44.7
Sspon.06G0001760-2B Saccharum spontaneum HOM04x5M002412 ORTHO04x5M002551 1.0e-70 270.0 311 50.5
Pgl_GLEAN_10009994 Cenchrus americanus HOM04x5M002412 ORTHO04x5M002551 1.4e-70 269.6 179 79.3
OB09G21400 Oryza brachyantha HOM04x5M002412 ORTHO04x5M002551 1.4e-70 269.6 376 54.5
Sspon.06G0001760-4D Saccharum spontaneum HOM04x5M002412 ORTHO04x5M002551 1.8e-70 269.2 385 45.2
Bradi3g40070 Brachypodium distachyon HOM04x5M002412 ORTHO04x5M002551 1.5e-69 266.2 378 45.0
Sspon.06G0001760-3C Saccharum spontaneum HOM04x5M002412 ORTHO04x5M002551 1.5e-69 266.2 387 44.2
LOC_Os08g39990 Oryza sativa ssp. japonica HOM04x5M002412 ORTHO04x5M002551 2.6e-69 265.4 399 43.1
Zjn_sc00015.1.g05520.1.am.mk Zoysia japonica ssp. nagirizaki HOM04x5M002412 ORTHO04x5M002551 1.7e-68 262.7 392 52.3
OsR498G0816446400.01 Oryza sativa ssp. indica HOM04x5M002412 ORTHO04x5M002551 4.5e-66 254.6 279 51.3
Zm00008a018045 Zea mays PH207 HOM04x5M002412 ORTHO04x5M002551 3.3e-64 248.4 394 45.2
CALSI_Maker00035014 Calamus simplicifolius HOM04x5M002412 ORTHO04x5M002551 1.7e-57 226.1 320 42.2
CALSI_Maker00024525 Calamus simplicifolius HOM04x5M002412 ORTHO04x5M002551 1.7e-57 226.1 320 42.2
CALSI_Maker00032976 Calamus simplicifolius HOM04x5M002412 ORTHO04x5M002551 6.6e-57 224.2 380 39.5
p5.00_sc00037_p0128 Elaeis guineensis HOM04x5M002412 ORTHO04x5M002551 1.1e-56 223.4 383 38.4
Spipo12G0038000 Spirodela polyrhiza HOM04x5M002412 ORTHO04x5M002551 4.9e-52 208.0 387 35.1
Aco000750 Ananas comosus HOM04x5M002412 ORTHO04x5M002551 2.4e-51 205.7 267 43.8
Ma08_g25090 Musa acuminata HOM04x5M002412 ORTHO04x5M002551 2.4e-51 205.7 317 41.0
Ma09_g12010 Musa acuminata HOM04x5M002412 ORTHO04x5M002551 5.4e-51 204.5 294 44.2
Ma06_g38250 Musa acuminata HOM04x5M002412 ORTHO04x5M002551 7.0e-51 204.1 378 38.9
PEQU_14985 Phalaenopsis equestris HOM04x5M002412 ORTHO04x5M002551 1.2e-50 203.4 382 37.4
Spipo0G0076700 Spirodela polyrhiza HOM04x5M002412 ORTHO04x5M002551 6.6e-49 197.6 307 39.4
Ma05_g24710 Musa acuminata HOM04x5M002412 ORTHO04x5M002551 4.3e-48 194.9 316 39.2
p5.00_sc00131_p0014 Elaeis guineensis HOM04x5M002412 ORTHO04x5M002551 8.1e-47 190.7 384 35.9
Ma04_g25960 Musa acuminata HOM04x5M002412 ORTHO04x5M002551 3.2e-43 178.7 375 41.3
Potri.T110800 Populus trichocarpa HOM04x5M002412 ORTHO04x5M002551 7.1e-43 177.6 319 36.4
Potri.006G191800 Populus trichocarpa HOM04x5M002412 ORTHO04x5M002551 2.1e-42 176.0 316 35.1
Potri.016G046900 Populus trichocarpa HOM04x5M002412 ORTHO04x5M002551 2.7e-42 175.6 319 36.1
Solyc10g080470.1 Solanum lycopersicum HOM04x5M002412 ORTHO04x5M002551 2.7e-42 175.6 318 36.2
Aco018516 Ananas comosus HOM04x5M002412 ORTHO04x5M002551 3.5e-42 175.3 313 37.4
Zosma45g00520 Zostera marina HOM04x5M002412 ORTHO04x5M002551 6.0e-42 174.5 374 34.2
AT3G57990 Arabidopsis thaliana HOM04x5M002412 ORTHO04x5M002551 2.3e-41 172.6 327 34.3
PH01000770G0030 Phyllostachys edulis HOM04x5M002570 ORTHO04x5M002687 5.6e-40 167.9 157 60.5
ATR0605G156 Amborella trichopoda HOM04x5M002412 ORTHO04x5M002551 2.8e-39 165.6 367 32.7
GSVIVG01033512001 Vitis vinifera HOM04x5M002412 ORTHO04x5M002551 1.6e-34 149.8 229 38.4
ATR0049G071 Amborella trichopoda HOM04x5M002412 ORTHO04x5M002551 4.3e-32 141.7 373 29.8
PH01001286G0020 Phyllostachys edulis HOM04x5M002412 ORTHO04x5M002767 4.3e-32 141.7 237 45.6
HORVU7Hr1G050870 Hordeum vulgare HOM04x5M002412 ORTHO04x5M002551 6.9e-30 134.4 199 45.2
Zosma221g00080 Zostera marina HOM04x5M002412 ORTHO04x5M002551 7.6e-29 131.0 279 31.5
PAB00042622 Picea abies HOM04x5M002412 ORTHO04x5M002551 9.9e-29 130.6 360 29.2
Pp3c26_2720 Physcomitrium patens HOM04x5M002412 ORTHO04x5M002551 2.7e-26 122.5 115 53.0
Mapoly0061s0112 Marchantia polymorpha HOM04x5M002412 ORTHO04x5M002551 3.5e-26 122.1 121 48.8
Pp3c4_23000 Physcomitrium patens HOM04x5M002412 ORTHO04x5M002551 1.3e-25 120.2 116 50.0
p5.00_sc00002_p0114 Elaeis guineensis HOM04x5M002412 ORTHO04x5M002551 3.1e-22 109.0 321 29.9
gene10433 Selaginella moellendorffii HOM04x5M002412 ORTHO04x5M002551 1.5e-21 106.7 349 26.6
TRITD5Bv1G106560 Triticum turgidum HOM04x5M002412 ORTHO04x5M002551 2.0e-21 106.3 266 31.2
TraesCS5B02G170300 Triticum aestivum HOM04x5M002412 ORTHO04x5M002551 5.8e-21 104.8 267 32.2
Spipo5G0060300 Spirodela polyrhiza HOM04x5M002412 ORTHO04x5M002551 1.3e-20 103.6 127 44.1
HORVU5Hr1G053060 Hordeum vulgare HOM04x5M002412 ORTHO04x5M002551 4.9e-20 101.7 309 30.7
TraesCS5D02G177400 Triticum aestivum HOM04x5M002412 ORTHO04x5M002551 4.9e-20 101.7 267 31.8
TraesCS5A02G172900 Triticum aestivum HOM04x5M002412 ORTHO04x5M002551 1.1e-19 100.5 326 29.1
CALSI_Maker00040825 Calamus simplicifolius HOM04x5M002412 ORTHO04x5M002551 4.2e-19 98.6 102 48.0
Potri.003G088500 Populus trichocarpa HOM04x5M002412 ORTHO04x5M002551 2.3e-17 92.8 127 40.9
LOC_Os04g48600 Oryza sativa ssp. japonica HOM04x5M002412 ORTHO04x5M002551 9.6e-16 87.4 59 71.2
Pgl_GLEAN_10002438 Cenchrus americanus HOM04x5M002412 ORTHO04x5M002551 2.0e-13 79.7 152 40.8
evm.TU.AsparagusV1_04.1736.V1.1 Asparagus officinalis HOM04x5M002412 ORTHO04x5M002551 4.5e-13 78.6 253 26.5
LOC_Os09g10690 Oryza sativa ssp. japonica HOM04x5M002412 ORTHO04x5M002551 9.9e-13 77.4 251 32.3
OsR498G0916902900.01 Oryza sativa ssp. indica HOM04x5M002412 ORTHO04x5M002551 9.9e-13 77.4 251 32.3
Potri.001G145400 Populus trichocarpa HOM04x5M002412 ORTHO04x5M002551 1.9e-11 73.2 356 23.9
PH01001791G0500 Phyllostachys edulis HOM04x5M002412 ORTHO04x5M002551 1.6e-10 70.1 116 38.8
GSVIVG01013169001 Vitis vinifera HOM04x5M002412 ORTHO04x5M002551 3.0e-09 65.9 351 23.9
LOC_Os11g38450 Oryza sativa ssp. japonica HOM04x5M006374 ORTHO04x5M007929 2.5e-08 62.8 35 80.0
LOC_Os06g30960 Oryza sativa ssp. japonica HOM04x5M002412 ORTHO04x5M129426 2.4e-06 56.2 62 50.0

Amborella trichopoda (2 genes)
Ananas comosus (2 genes)
Apostasia shenzhenica (0 genes)
Arabidopsis thaliana (1 genes)
Asparagus officinalis (1 genes)
Brachypodium distachyon (2 genes)
Calamus simplicifolius (4 genes)
Cenchrus americanus (2 genes)
Chlamydomonas reinhardtii (0 genes)
Elaeis guineensis (3 genes)
Hordeum vulgare (3 genes)
Lolium perenne (2 genes)
Marchantia polymorpha (1 genes)
Micromonas commoda (0 genes)
Miscanthus sinensis (3 genes)
Musa acuminata (5 genes)
Oropetium thomaeum (1 genes)
Oryza brachyantha (2 genes)
Oryza sativa ssp. indica (3 genes)
Oryza sativa ssp. japonica (6 genes)
Phalaenopsis equestris (1 genes)
Phyllostachys edulis (4 genes)
Physcomitrium patens (2 genes)
Picea abies (1 genes)
Populus trichocarpa (5 genes)
Saccharum spontaneum (6 genes)
Selaginella moellendorffii (1 genes)
Setaria italica (1 genes)
Solanum lycopersicum (1 genes)
Sorghum bicolor (2 genes)
Spirodela polyrhiza (3 genes)
Triticum aestivum (9 genes)
Triticum turgidum (5 genes)
Vitis vinifera (2 genes)
Zea mays B73 (5 genes)
Zea mays B104 (5 genes)
Zea mays PH207 (4 genes)
Zostera marina (2 genes)
Zoysia japonica ssp. nagirizaki (2 genes)

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