Monocots PLAZA 4.5 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Zm00001d017491	Zea mays B73	HOM04x5M006860	ORTHO04x5M008356	1.4e-27	124.8	94	100.0
Zm00007a00015681	Zea mays B104	HOM04x5M006860	ORTHO04x5M008356	3.6e-23	110.2	85	100.0
Zm00008a022531	Zea mays PH207	HOM04x5M006860	ORTHO04x5M008356	7.9e-23	109.0	86	97.7
Misin07G434600	Miscanthus sinensis	HOM04x5M006860	ORTHO04x5M008356	2.4e-19	97.4	85	92.9
Sspon.04G0035910-1P	Saccharum spontaneum	HOM04x5M006860	ORTHO04x5M008356	5.9e-18	92.8	88	87.5
Seita.1G260200	Setaria italica	HOM04x5M006860	ORTHO04x5M008356	1.0e-17	92.0	86	90.7
Sobic.004G294900	Sorghum bicolor	HOM04x5M006860	ORTHO04x5M008356	2.2e-17	90.9	88	88.6
OB02G33880	Oryza brachyantha	HOM04x5M006860	ORTHO04x5M008356	6.7e-14	79.3	51	88.2
Bradi3g50710	Brachypodium distachyon	HOM04x5M006860	ORTHO04x5M008356	1.1e-13	78.6	86	73.3
LOC_Os02g44100	Oryza sativa ssp. japonica	HOM04x5M006860	ORTHO04x5M008356	1.3e-12	75.1	86	77.9
OsR498G0204455300.01	Oryza sativa ssp. indica	HOM04x5M006860	ORTHO04x5M008356	1.3e-12	75.1	86	77.9
Zm00008a016890	Zea mays PH207	HOM04x5M006860	ORTHO04x5M008356	2.8e-12	73.9	89	76.4
TraesCS6A02G250000	Triticum aestivum	HOM04x5M006860	ORTHO04x5M008356	3.7e-12	73.6	86	77.9
TraesCS6D02G231800	Triticum aestivum	HOM04x5M006860	ORTHO04x5M008356	3.7e-12	73.6	86	77.9
TRITD6Av1G159280	Triticum turgidum	HOM04x5M006860	ORTHO04x5M008356	6.3e-12	72.8	86	59.3
LP006591	Lolium perenne	HOM04x5M006860	ORTHO04x5M008356	8.2e-12	72.4	86	66.3
CALSI_Maker00016875	Calamus simplicifolius	HOM04x5M006860	ORTHO04x5M008356	1.2e-10	68.6	48	83.3
TraesCS6B02G275400	Triticum aestivum	HOM04x5M006860	ORTHO04x5M008356	1.2e-10	68.6	86	75.6
CALSI_Maker00048351	Calamus simplicifolius	HOM04x5M006860	ORTHO04x5M008356	2.0e-10	67.8	48	81.2
p5.00_sc00023_p0061	Elaeis guineensis	HOM04x5M006860	ORTHO04x5M008356	3.5e-10	67.0	48	79.2
TRITD6Bv1G145210	Triticum turgidum	HOM04x5M006860	ORTHO04x5M008356	5.9e-10	66.2	86	76.7
Aco012818	Ananas comosus	HOM04x5M006860	ORTHO04x5M008356	3.8e-09	63.5	48	72.9
Zosma31g01320	Zostera marina	HOM04x5M006860	ORTHO04x5M008356	1.2e-07	58.5	46	71.7
Ma04_g35500	Musa acuminata	HOM04x5M006860	ORTHO04x5M008356	2.1e-07	57.8	48	72.9
Ma04_g20200	Musa acuminata	HOM04x5M006860	ORTHO04x5M008356	3.6e-07	57.0	48	70.8
CALSI_Maker00035084	Calamus simplicifolius	HOM04x5M006860	ORTHO04x5M008356	8.0e-07	55.8	48	70.8
Ma05_g13340	Musa acuminata	HOM04x5M006860	ORTHO04x5M008356	8.0e-07	55.8	48	72.9
AT4G17310	Arabidopsis thaliana	HOM04x5M006860	ORTHO04x5M008356	1.8e-06	54.7	53	69.8

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment