Interactive Phylogenetics Module

Gene Id
Zm00001d003683

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Include Gene ID Organism Homologous gene familyOrthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001d004839 Zea mays B73 HOM04x5M002206 ORTHO04x5M002558 1.9e-227 790.8 390 100.0
Zm00001d003683 Zea mays B73 HOM04x5M002206 ORTHO04x5M002558 1.9e-227 790.8 390 100.0
Zm00001d004841 Zea mays B73 HOM04x5M002206 ORTHO04x5M002558 1.9e-227 790.8 390 100.0
Zm00001d003680 Zea mays B73 HOM04x5M002206 ORTHO04x5M002558 1.9e-227 790.8 390 100.0
Zm00007a00033030 Zea mays B104 HOM04x5M002206 ORTHO04x5M002558 1.9e-227 790.8 390 100.0
Zm00007a00034301 Zea mays B104 HOM04x5M002206 ORTHO04x5M002558 1.9e-227 790.8 390 100.0
Zm00007a00040374 Zea mays B104 HOM04x5M002206 ORTHO04x5M002558 1.9e-227 790.8 390 100.0
Zm00007a00021855 Zea mays B104 HOM04x5M002206 ORTHO04x5M002558 1.9e-227 790.8 390 100.0
Zm00008a008221 Zea mays PH207 HOM04x5M002206 ORTHO04x5M002558 1.9e-227 790.8 390 100.0
Zm00008a007375 Zea mays PH207 HOM04x5M002206 ORTHO04x5M002558 1.9e-227 790.8 390 100.0
Zm00008a008218 Zea mays PH207 HOM04x5M002206 ORTHO04x5M002558 1.9e-227 790.8 390 100.0
Zm00001d028622 Zea mays B73 HOM04x5M002206 ORTHO04x5M002558 1.6e-226 787.7 390 99.7
Zm00007a00008944 Zea mays B104 HOM04x5M002206 ORTHO04x5M002558 1.6e-226 787.7 390 99.7
Zjn_sc00031.1.g01900.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM04x5M002206 ORTHO04x5M002558 1.3e-223 778.1 390 97.2
Zjn_sc00205.1.g00340.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM04x5M002206 ORTHO04x5M002558 2.8e-223 776.9 390 96.9
Sspon.05G0018670-1A Saccharum spontaneum HOM04x5M002206 ORTHO04x5M002558 4.8e-223 776.2 390 97.7
Sspon.05G0018670-3C Saccharum spontaneum HOM04x5M002206 ORTHO04x5M002558 4.8e-223 776.2 390 97.7
Sspon.05G0018670-4D Saccharum spontaneum HOM04x5M002206 ORTHO04x5M002558 4.8e-223 776.2 390 97.7
Sobic.005G050500 Sorghum bicolor HOM04x5M002206 ORTHO04x5M002558 6.3e-223 775.8 390 97.4
Sspon.05G0018670-2B Saccharum spontaneum HOM04x5M002206 ORTHO04x5M002558 1.1e-222 775.0 390 97.4
Seita.8G046000 Setaria italica HOM04x5M002206 ORTHO04x5M002558 1.8e-222 774.2 390 97.2
Zjn_sc00028.1.g01580.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM04x5M002206 ORTHO04x5M002558 1.2e-221 771.5 390 96.7
Pgl_GLEAN_10027530 Cenchrus americanus HOM04x5M002206 ORTHO04x5M002558 5.9e-221 769.2 390 96.4
OB11G13520 Oryza brachyantha HOM04x5M002206 ORTHO04x5M002558 5.9e-221 769.2 390 96.2
Bradi4g24610 Brachypodium distachyon HOM04x5M002206 ORTHO04x5M002558 7.7e-221 768.8 390 95.9
Oropetium_20150105_14948 Oropetium thomaeum HOM04x5M002206 ORTHO04x5M002558 7.7e-221 768.8 390 96.4
LP009684 Lolium perenne HOM04x5M002206 ORTHO04x5M002558 2.9e-220 766.9 390 95.4
LOC_Os12g07010 Oryza sativa ssp. japonica HOM04x5M002206 ORTHO04x5M002558 2.9e-220 766.9 390 95.4
OsR498G1221014100.01 Oryza sativa ssp. indica HOM04x5M002206 ORTHO04x5M002558 2.9e-220 766.9 390 95.4
OB12G14050 Oryza brachyantha HOM04x5M002206 ORTHO04x5M002558 3.8e-220 766.5 390 95.4
HORVU5Hr1G036630 Hordeum vulgare HOM04x5M002206 ORTHO04x5M002558 1.1e-219 765.0 390 95.1
LOC_Os11g06750 Oryza sativa ssp. japonica HOM04x5M002206 ORTHO04x5M002558 1.4e-219 764.6 390 94.9
HORVU4Hr1G019980 Hordeum vulgare HOM04x5M002206 ORTHO04x5M002558 3.2e-219 763.5 390 94.6
TraesCS5D02G129200 Triticum aestivum HOM04x5M002206 ORTHO04x5M002558 3.2e-219 763.5 390 94.4
TraesCS4D02G109200 Triticum aestivum HOM04x5M002206 ORTHO04x5M002558 3.2e-219 763.5 390 94.6
TraesCS4B02G111500 Triticum aestivum HOM04x5M002206 ORTHO04x5M002558 3.2e-219 763.5 390 94.6
TRITD4Bv1G043630 Triticum turgidum HOM04x5M002206 ORTHO04x5M002558 3.2e-219 763.5 390 94.6
Misin12G204100 Miscanthus sinensis HOM04x5M002206 ORTHO04x5M002558 4.2e-219 763.1 390 96.4
Sspon.05G0003860-1A Saccharum spontaneum HOM04x5M002206 ORTHO04x5M002558 4.2e-219 763.1 390 96.4
Sspon.05G0003860-2B Saccharum spontaneum HOM04x5M002206 ORTHO04x5M002558 4.2e-219 763.1 390 96.4
Sspon.05G0003860-3D Saccharum spontaneum HOM04x5M002206 ORTHO04x5M002558 4.2e-219 763.1 390 96.4
TraesCS5B02G118400 Triticum aestivum HOM04x5M002206 ORTHO04x5M002558 4.2e-219 763.1 390 94.1
TRITD5Bv1G069610 Triticum turgidum HOM04x5M002206 ORTHO04x5M002558 4.2e-219 763.1 390 94.1
Seita.7G290900 Setaria italica HOM04x5M002206 ORTHO04x5M002558 9.4e-219 761.9 390 95.6
Bradi4g41680 Brachypodium distachyon HOM04x5M002206 ORTHO04x5M002558 1.6e-218 761.1 390 94.9
LP022057 Lolium perenne HOM04x5M002206 ORTHO04x5M002558 2.1e-218 760.8 390 94.4
TraesCS4A02G208000 Triticum aestivum HOM04x5M002206 ORTHO04x5M002558 2.7e-218 760.4 390 94.1
Misin11G213600 Miscanthus sinensis HOM04x5M002206 ORTHO04x5M002558 1.8e-217 757.7 390 95.6
TraesCS5A02G112400 Triticum aestivum HOM04x5M002206 ORTHO04x5M002558 2.3e-217 757.3 390 93.6
Misin10G037600 Miscanthus sinensis HOM04x5M002206 ORTHO04x5M002558 3.0e-217 756.9 390 95.6
Misin09G029300 Miscanthus sinensis HOM04x5M002206 ORTHO04x5M002558 5.1e-217 756.1 390 95.1
Pgl_GLEAN_10038268 Cenchrus americanus HOM04x5M002206 ORTHO04x5M002558 3.3e-216 753.4 390 95.1
PEQU_03265 Phalaenopsis equestris HOM04x5M002206 ORTHO04x5M002558 6.1e-210 732.6 390 90.3
Ma07_g03230 Musa acuminata HOM04x5M002206 ORTHO04x5M002558 1.4e-209 731.5 390 88.7
ASH_gene15976 Apostasia shenzhenica HOM04x5M002206 ORTHO04x5M002558 1.5e-208 728.0 390 88.5
PEQU_01484 Phalaenopsis equestris HOM04x5M002206 ORTHO04x5M002558 9.7e-208 725.3 390 89.0
Ma05_g01000 Musa acuminata HOM04x5M002206 ORTHO04x5M002558 1.7e-207 724.5 390 89.0
GSVIVG01034555001 Vitis vinifera HOM04x5M002206 ORTHO04x5M002558 1.7e-207 724.5 390 89.0
Aco018227 Ananas comosus HOM04x5M002206 ORTHO04x5M002558 2.8e-207 723.8 390 88.7
CALSI_Maker00016161 Calamus simplicifolius HOM04x5M002206 ORTHO04x5M002558 3.7e-207 723.4 390 88.7
Potri.005G194500 Populus trichocarpa HOM04x5M002206 ORTHO04x5M002558 4.1e-206 719.9 390 87.7
GSVIVG01023241001 Vitis vinifera HOM04x5M002206 ORTHO04x5M002558 9.1e-206 718.8 390 87.2
ATR0753G037 Amborella trichopoda HOM04x5M002206 ORTHO04x5M002558 2.0e-205 717.6 390 87.7
Spipo9G0005300 Spirodela polyrhiza HOM04x5M002206 ORTHO04x5M002558 7.7e-205 715.7 390 87.4
Potri.002G066200 Populus trichocarpa HOM04x5M002206 ORTHO04x5M002558 2.2e-204 714.1 390 87.4
Solyc01g104590.2 Solanum lycopersicum HOM04x5M002206 ORTHO04x5M002558 2.9e-204 713.8 390 87.7
Aco011284 Ananas comosus HOM04x5M002206 ORTHO04x5M002558 8.5e-204 712.2 390 86.9
evm.TU.AsparagusV1_10.982.V1.1 Asparagus officinalis HOM04x5M002206 ORTHO04x5M002558 8.5e-204 712.2 390 86.4
PAB00012230 Picea abies HOM04x5M002206 ORTHO04x5M002558 8.5e-204 712.2 390 87.4
Ma05_g01250 Musa acuminata HOM04x5M002206 ORTHO04x5M002558 7.2e-203 709.1 390 87.4
Zosma177g00280 Zostera marina HOM04x5M002206 ORTHO04x5M002558 7.2e-203 709.1 390 87.2
Potri.003G008300 Populus trichocarpa HOM04x5M002206 ORTHO04x5M002558 4.7e-202 706.4 390 85.6
Potri.003G007700 Populus trichocarpa HOM04x5M002206 ORTHO04x5M002558 4.7e-202 706.4 390 85.6
Solyc01g103510.2 Solanum lycopersicum HOM04x5M002206 ORTHO04x5M002558 1.0e-201 705.3 390 85.6
Ma00_g03400 Musa acuminata HOM04x5M002206 ORTHO04x5M002558 5.3e-198 693.0 390 85.4
AT1G61580 Arabidopsis thaliana HOM04x5M002206 ORTHO04x5M002558 4.5e-197 689.9 386 85.5
evm.TU.AsparagusV1_10.1806.V1.1 Asparagus officinalis HOM04x5M002206 ORTHO04x5M002558 7.7e-197 689.1 390 86.2
AT1G43170 Arabidopsis thaliana HOM04x5M002206 ORTHO04x5M002558 7.7e-197 689.1 387 84.8
Ma11_g08620 Musa acuminata HOM04x5M002206 ORTHO04x5M002558 1.0e-196 688.7 390 85.9
PAB00020811 Picea abies HOM04x5M002206 ORTHO04x5M002558 5.5e-195 682.9 390 84.1
Mapoly0001s0237 Marchantia polymorpha HOM04x5M002206 ORTHO04x5M002558 1.2e-192 675.2 390 83.6
Zosma462g00070 Zostera marina HOM04x5M002206 ORTHO04x5M002558 9.8e-192 672.2 390 81.8
gene17677 Selaginella moellendorffii HOM04x5M002206 ORTHO04x5M002558 1.3e-191 671.8 390 82.1
gene9242 Selaginella moellendorffii HOM04x5M002206 ORTHO04x5M002558 2.8e-191 670.6 390 81.8
ATR0022G057 Amborella trichopoda HOM04x5M002206 ORTHO04x5M002558 2.2e-188 661.0 362 86.7
Pp3c10_25460 Physcomitrium patens HOM04x5M002206 ORTHO04x5M002558 6.5e-188 659.4 390 81.5
evm.TU.AsparagusV1_04.382.V1.1 Asparagus officinalis HOM04x5M002206 ORTHO04x5M002558 2.5e-187 657.5 384 83.6
CALSI_Maker00012118 Calamus simplicifolius HOM04x5M002206 ORTHO04x5M002558 1.6e-186 654.8 362 85.1
ATR0665G587 Amborella trichopoda HOM04x5M002206 ORTHO04x5M002558 2.1e-186 654.4 362 85.9
Pp3c5_27000 Physcomitrium patens HOM04x5M002206 ORTHO04x5M002558 2.3e-185 651.0 389 80.7
Pp3c5_27030 Physcomitrium patens HOM04x5M002206 ORTHO04x5M002558 2.3e-185 651.0 389 80.7
Pp3c6_2960 Physcomitrium patens HOM04x5M002206 ORTHO04x5M002558 2.0e-184 647.9 390 79.7
Zm00008a006414 Zea mays PH207 HOM04x5M002206 ORTHO04x5M002558 4.7e-178 626.7 338 91.7
Zm00007a00048646 Zea mays B104 HOM04x5M002206 ORTHO04x5M005356 7.5e-176 619.4 390 82.3
Sobic.006G216600 Sorghum bicolor HOM04x5M002206 ORTHO04x5M002558 2.7e-173 610.9 304 98.4
MCO01G195 Micromonas commoda HOM04x5M002206 ORTHO04x5M002558 1.1e-171 605.5 390 74.1
Cre10.g417700 Chlamydomonas reinhardtii HOM04x5M002206 ORTHO04x5M002558 3.6e-170 600.5 390 75.4
CALSI_Maker00037352 Calamus simplicifolius HOM04x5M002206 ORTHO04x5M002558 3.7e-167 590.5 403 74.2
TRITD5Av1G077310 Triticum turgidum HOM04x5M002206 ORTHO04x5M002558 4.4e-160 567.0 390 75.1
Spipo2G0011300 Spirodela polyrhiza HOM04x5M002206 ORTHO04x5M002558 6.0e-157 556.6 305 86.6
Zm00008a007374 Zea mays PH207 HOM04x5M002206 ORTHO04x5M002558 5.6e-155 550.1 389 75.1
Zm00007a00038628 Zea mays B104 HOM04x5M002206 ORTHO04x5M002558 4.9e-151 537.0 296 91.2
Zm00001d002463 Zea mays B73 HOM04x5M002206 ORTHO04x5M002558 2.6e-128 461.5 238 95.8
Zm00001d002462 Zea mays B73 HOM04x5M002206 ORTHO04x5M002558 2.6e-128 461.5 238 95.8
PH01002363G0020 Phyllostachys edulis HOM04x5M002206 ORTHO04x5M002558 1.1e-107 392.9 319 65.5
Zm00008a001089 Zea mays PH207 HOM04x5M002206 ORTHO04x5M002558 6.3e-98 360.5 303 64.4
TRITD4Av1G160630 Triticum turgidum HOM04x5M002206 ORTHO04x5M002558 2.6e-91 338.6 390 51.3
Zm00007a00035740 Zea mays B104 HOM04x5M002206 ORTHO04x5M252936 4.7e-53 211.5 154 75.3
Zm00008a006281 Zea mays PH207 HOM04x5M002206 ORTHO04x5M258530 4.9e-50 201.4 226 56.2
GSVIVG01022284001 Vitis vinifera HOM04x5M002206 ORTHO04x5M023695 4.7e-37 158.3 86 86.0
CALSI_Maker00009347 Calamus simplicifolius HOM04x5M002206 ORTHO04x5M023695 7.6e-35 151.0 80 87.5
Ma06_g20930 Musa acuminata HOM04x5M002206 ORTHO04x5M094653 1.5e-11 73.6 46 73.9
Zjn_sc00033.1.g02080.1.am.mk Zoysia japonica ssp. nagirizaki HOM04x5M002206 ORTHO04x5M234662 6.4e-10 68.2 46 73.9
Ma06_g20940 Musa acuminata HOM04x5M002206 ORTHO04x5M093246 1.2e-08 63.9 172 34.9

Amborella trichopoda (3 genes)
Ananas comosus (2 genes)
Apostasia shenzhenica (1 genes)
Arabidopsis thaliana (2 genes)
Asparagus officinalis (3 genes)
Brachypodium distachyon (2 genes)
Calamus simplicifolius (4 genes)
Cenchrus americanus (2 genes)
Chlamydomonas reinhardtii (1 genes)
Elaeis guineensis (0 genes)
Hordeum vulgare (2 genes)
Lolium perenne (2 genes)
Marchantia polymorpha (1 genes)
Micromonas commoda (1 genes)
Miscanthus sinensis (4 genes)
Musa acuminata (7 genes)
Oropetium thomaeum (1 genes)
Oryza brachyantha (2 genes)
Oryza sativa ssp. indica (1 genes)
Oryza sativa ssp. japonica (2 genes)
Phalaenopsis equestris (2 genes)
Phyllostachys edulis (1 genes)
Physcomitrium patens (4 genes)
Picea abies (2 genes)
Populus trichocarpa (4 genes)
Saccharum spontaneum (7 genes)
Selaginella moellendorffii (2 genes)
Setaria italica (2 genes)
Solanum lycopersicum (2 genes)
Sorghum bicolor (2 genes)
Spirodela polyrhiza (2 genes)
Triticum aestivum (6 genes)
Triticum turgidum (4 genes)
Vitis vinifera (3 genes)
Zea mays B73 (7 genes)
Zea mays B104 (8 genes)
Zea mays PH207 (7 genes)
Zostera marina (2 genes)
Zoysia japonica ssp. nagirizaki (4 genes)

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