Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Zjn_sc00040.1.g01780.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M005753	ORTHO04x5M007082	3.0e-176	620.5	342	100.0
Zjn_sc00009.1.g09930.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M005753	ORTHO04x5M007082	1.8e-109	398.7	387	68.2
Oropetium_20150105_12722	Oropetium thomaeum	HOM04x5M005753	ORTHO04x5M007082	1.2e-97	359.4	216	93.5
Sobic.003G317200	Sorghum bicolor	HOM04x5M005753	ORTHO04x5M007082	9.7e-95	349.7	216	90.3
Misin05G292600	Miscanthus sinensis	HOM04x5M005753	ORTHO04x5M007082	2.2e-94	348.6	216	90.3
Zm00001d043269	Zea mays B73	HOM04x5M005753	ORTHO04x5M007082	4.8e-94	347.4	216	90.3
Zm00007a00050933	Zea mays B104	HOM04x5M005753	ORTHO04x5M007082	1.8e-93	345.5	216	89.8
Bradi2g51800	Brachypodium distachyon	HOM04x5M005753	ORTHO04x5M007082	3.1e-93	344.7	216	88.4
Seita.5G340600	Setaria italica	HOM04x5M005753	ORTHO04x5M007082	4.1e-93	344.4	212	90.6
LP036182	Lolium perenne	HOM04x5M005753	ORTHO04x5M007082	9.1e-93	343.2	214	91.6
Misin06G281600	Miscanthus sinensis	HOM04x5M005753	ORTHO04x5M007082	9.1e-93	343.2	216	89.4
PH01000267G1150	Phyllostachys edulis	HOM04x5M005753	ORTHO04x5M007082	1.2e-92	342.8	212	91.5
Zm00001d012618	Zea mays B73	HOM04x5M005753	ORTHO04x5M007082	1.6e-92	342.4	216	88.9
Zm00007a00024916	Zea mays B104	HOM04x5M005753	ORTHO04x5M007082	1.6e-92	342.4	216	88.9
LOC_Os01g57260	Oryza sativa ssp. japonica	HOM04x5M005753	ORTHO04x5M007082	7.7e-92	340.1	216	90.3
OsR498G0102101700.01	Oryza sativa ssp. indica	HOM04x5M005753	ORTHO04x5M007082	7.7e-92	340.1	216	90.3
PH01000109G1220	Phyllostachys edulis	HOM04x5M005753	ORTHO04x5M007082	3.8e-91	337.8	216	89.4
OB01G42010	Oryza brachyantha	HOM04x5M000005	ORTHO04x5M000867	4.8e-86	320.9	203	90.6
Zm00008a033108	Zea mays PH207	HOM04x5M005753	ORTHO04x5M007082	8.0e-81	303.5	193	88.6
Aco014399	Ananas comosus	HOM04x5M005753	ORTHO04x5M007082	2.9e-75	285.0	215	77.7
Pgl_GLEAN_10012920	Cenchrus americanus	HOM04x5M005753	ORTHO04x5M007082	1.9e-74	282.3	360	52.8
TraesCS3B02G349400	Triticum aestivum	HOM04x5M005753	ORTHO04x5M007082	1.9e-74	282.3	216	77.3
TraesCS3D02G314200	Triticum aestivum	HOM04x5M005753	ORTHO04x5M007082	1.9e-74	282.3	216	74.1
TRITD3Bv1G178970	Triticum turgidum	HOM04x5M005753	ORTHO04x5M007082	1.9e-74	282.3	216	77.3
p5.00_sc00259_p0012	Elaeis guineensis	HOM04x5M005753	ORTHO04x5M007082	2.8e-73	278.5	216	72.7
TraesCS3A02G317000	Triticum aestivum	HOM04x5M005753	ORTHO04x5M007082	2.8e-73	278.5	216	77.8
TRITD3Av1G201290	Triticum turgidum	HOM04x5M005753	ORTHO04x5M007082	2.8e-73	278.5	216	77.8
p5.00_sc00154_p0042	Elaeis guineensis	HOM04x5M005753	ORTHO04x5M007082	8.0e-73	276.9	216	73.1
Zm00008a013662	Zea mays PH207	HOM04x5M005753	ORTHO04x5M007082	3.4e-71	271.6	217	76.5
Ma08_g03290	Musa acuminata	HOM04x5M005753	ORTHO04x5M007082	3.7e-70	268.1	215	67.9
Potri.004G035500	Populus trichocarpa	HOM04x5M005753	ORTHO04x5M007082	3.2e-69	265.0	215	63.7
Solyc02g080270.2	Solanum lycopersicum	HOM04x5M005753	ORTHO04x5M007082	3.2e-69	265.0	218	63.3
ASH_gene14924	Apostasia shenzhenica	HOM04x5M005753	ORTHO04x5M007082	4.1e-69	264.6	214	71.0
Ma10_g10040	Musa acuminata	HOM04x5M005753	ORTHO04x5M007082	7.0e-69	263.8	214	69.6
AT4G21560	Arabidopsis thaliana	HOM04x5M005753	ORTHO04x5M007082	1.9e-66	255.8	215	61.9
GSVIVG01006715001	Vitis vinifera	HOM04x5M005753	ORTHO04x5M007082	3.3e-66	255.0	215	64.7
Solyc03g031750.1	Solanum lycopersicum	HOM04x5M005753	ORTHO04x5M007082	1.2e-65	253.1	215	62.3
CALSI_Maker00015618	Calamus simplicifolius	HOM04x5M005753	ORTHO04x5M007082	6.1e-65	250.8	197	73.1
Potri.011G043800	Populus trichocarpa	HOM04x5M005753	ORTHO04x5M007082	6.1e-65	250.8	215	66.5
AT4G05000	Arabidopsis thaliana	HOM04x5M005753	ORTHO04x5M007082	8.0e-65	250.4	215	60.0
Zosma467g00170	Zostera marina	HOM04x5M005753	ORTHO04x5M007082	1.2e-63	246.5	214	61.7
PAB00012356	Picea abies	HOM04x5M005753	ORTHO04x5M007082	4.1e-61	238.0	211	57.8
ATR1149G025	Amborella trichopoda	HOM04x5M005753	ORTHO04x5M007082	7.0e-61	237.3	214	57.0
Mapoly0186s0005	Marchantia polymorpha	HOM04x5M005753	ORTHO04x5M007082	1.0e-59	233.4	213	56.8
gene13632	Selaginella moellendorffii	HOM04x5M005753	ORTHO04x5M007082	1.0e-59	233.4	210	58.6
gene12907	Selaginella moellendorffii	HOM04x5M005753	ORTHO04x5M007082	1.0e-59	233.4	210	58.6
Pp3c17_18750	Physcomitrium patens	HOM04x5M005753	ORTHO04x5M007082	2.3e-59	232.3	213	55.4
CALSI_Maker00002332	Calamus simplicifolius	HOM04x5M005753	ORTHO04x5M007082	1.5e-58	229.6	215	65.1
Pp3c14_20060	Physcomitrium patens	HOM04x5M005753	ORTHO04x5M007082	5.6e-58	227.6	213	53.5
Cre16.g678100	Chlamydomonas reinhardtii	HOM04x5M005753	ORTHO04x5M007082	4.7e-41	171.4	221	43.0
Ma10_g09150	Musa acuminata	HOM04x5M000001	ORTHO04x5M000001	9.6e-18	94.0	87	55.2
MCO01G694	Micromonas commoda	HOM04x5M005753	ORTHO04x5M007082	3.7e-17	92.0	238	31.1
Zjn_sc00019.1.g01060.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M005753	ORTHO04x5M007082	9.3e-13	77.4	51	78.4
Spipo8G0015400	Spirodela polyrhiza	HOM04x5M005753	ORTHO04x5M007082	6.0e-12	74.7	70	55.7
PEQU_04978	Phalaenopsis equestris	HOM04x5M005753	ORTHO04x5M007082	1.6e-09	66.6	53	67.9
Zm00007a00041295	Zea mays B104	HOM04x5M014912	ORTHO04x5M017882	1.3e-06	57.0	61	50.8
Zm00008a017941	Zea mays PH207	HOM04x5M014912	ORTHO04x5M017882	1.3e-06	57.0	61	50.8
Zm00008a034107	Zea mays PH207	HOM04x5M014912	ORTHO04x5M017882	2.2e-06	56.2	30	86.7

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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