Monocots PLAZA 4.5 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
TraesCS3D02G256200	Triticum aestivum	HOM04x5M007584	ORTHO04x5M009863	3.2e-82	307.8	210	100.0
TraesCS3A02G255400	Triticum aestivum	HOM04x5M007584	ORTHO04x5M009863	2.1e-78	295.0	211	96.7
TRITD3Av1G171120	Triticum turgidum	HOM04x5M007584	ORTHO04x5M009863	2.1e-78	295.0	211	96.7
Bradi2g47530	Brachypodium distachyon	HOM04x5M007584	ORTHO04x5M009863	3.6e-62	241.1	208	82.7
LP005075	Lolium perenne	HOM04x5M007584	ORTHO04x5M009863	5.4e-58	227.3	210	79.5
HORVU3Hr1G065770	Hordeum vulgare	HOM04x5M007584	ORTHO04x5M009863	4.2e-50	201.1	212	73.1
TraesCS3B02G287300	Triticum aestivum	HOM04x5M007584	ORTHO04x5M009863	4.3e-39	164.5	210	69.5
TRITD3Bv1G149650	Triticum turgidum	HOM04x5M007584	ORTHO04x5M009863	4.3e-39	164.5	210	69.5
OB01G36900	Oryza brachyantha	HOM04x5M007584	ORTHO04x5M009863	1.8e-32	142.5	221	61.1
TraesCS7A02G460400	Triticum aestivum	HOM04x5M001689	ORTHO04x5M017784	9.3e-26	120.2	101	70.3
TRITD7Av1G245470	Triticum turgidum	HOM04x5M007584	ORTHO04x5M017784	1.2e-25	119.8	101	70.3
TraesCS4A02G293400	Triticum aestivum	HOM04x5M007584	ORTHO04x5M017784	2.5e-23	112.1	95	70.5
TRITD4Av1G200790	Triticum turgidum	HOM04x5M007584	ORTHO04x5M017784	2.5e-23	112.1	95	70.5
Zm00007a00046319	Zea mays B104	HOM04x5M007584	ORTHO04x5M009863	7.4e-23	110.5	249	41.0
LOC_Os01g50450	Oryza sativa ssp. japonica	HOM04x5M007584	ORTHO04x5M009863	1.6e-22	109.4	218	57.8
Zm00001d043736	Zea mays B73	HOM04x5M007584	ORTHO04x5M009863	1.6e-22	109.4	249	40.6
OsR498G0101834700.01	Oryza sativa ssp. indica	HOM04x5M007584	ORTHO04x5M009863	2.2e-22	109.0	218	57.3
Zjn_sc00011.1.g00900.1.sm.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M007584	ORTHO04x5M009863	1.3e-19	99.8	241	34.9
Zm00001d011658	Zea mays B73	HOM04x5M007584	ORTHO04x5M009863	4.2e-18	94.7	232	37.9
Zm00008a032328	Zea mays PH207	HOM04x5M007584	ORTHO04x5M009863	4.2e-18	94.7	232	37.9
Sspon.03G0008190-1A	Saccharum spontaneum	HOM04x5M007584	ORTHO04x5M009863	5.5e-18	94.4	222	50.9
PH01000764G0740	Phyllostachys edulis	HOM04x5M007584	ORTHO04x5M009863	2.7e-17	92.0	201	54.2
TraesCS2B02G433600	Triticum aestivum	HOM04x5M007584	ORTHO04x5M009863	6.1e-17	90.9	62	80.6
TraesCS4A02G430300	Triticum aestivum	HOM04x5M007584	ORTHO04x5M009863	6.1e-17	90.9	62	80.6
TraesCS3B02G490200	Triticum aestivum	HOM04x5M007584	ORTHO04x5M009863	1.4e-16	89.7	62	79.0
TraesCS6B02G258100	Triticum aestivum	HOM04x5M007584	ORTHO04x5M009863	1.4e-16	89.7	62	79.0
Zm00008a014052	Zea mays PH207	HOM04x5M007584	ORTHO04x5M009863	5.1e-16	87.8	116	57.8
PH01002236G0110	Phyllostachys edulis	HOM04x5M007584	ORTHO04x5M009863	8.8e-16	87.0	191	52.9
Zm00007a00015290	Zea mays B104	HOM04x5M007584	ORTHO04x5M009863	6.9e-13	77.4	102	57.8
TraesCS5A02G346600	Triticum aestivum	HOM04x5M007584	ORTHO04x5M009863	1.1e-10	70.1	49	77.6
Sspon.03G0008190-3C	Saccharum spontaneum	HOM04x5M007584	ORTHO04x5M009863	1.9e-10	69.3	196	48.5
Zjn_sc00029.1.g03460.1.sm.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M007584	ORTHO04x5M009863	3.2e-10	68.6	205	35.1
Sspon.03G0008190-2B	Saccharum spontaneum	HOM04x5M007584	ORTHO04x5M009863	1.0e-08	63.5	191	47.6
Misin06G249900	Miscanthus sinensis	HOM04x5M007584	ORTHO04x5M009863	1.8e-08	62.8	196	46.4
Pgl_GLEAN_10003649	Cenchrus americanus	HOM04x5M007584	ORTHO04x5M009863	7.4e-07	57.4	176	29.0
Seita.5G284800	Setaria italica	HOM04x5M007584	ORTHO04x5M009863	9.7e-07	57.0	168	36.9

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment