Interactive Phylogenetics Module

Gene Id
TraesCS3D02G188800

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Include Gene ID Organism Homologous gene familyOrthologous gene family E-value Bitscore Alignment Length Identity Percentage
TraesCS3D02G188800 Triticum aestivum HOM04x5M005388 ORTHO04x5M007148 0.0e+00 1410.2 722 100.0
TRITD3Bv1G092550 Triticum turgidum HOM04x5M005388 ORTHO04x5M007148 0.0e+00 1400.2 722 99.3
TraesCS3B02G214600 Triticum aestivum HOM04x5M005388 ORTHO04x5M007148 0.0e+00 1399.8 722 99.2
TraesCS3A02G184800 Triticum aestivum HOM04x5M005388 ORTHO04x5M007148 0.0e+00 1387.5 722 98.3
LP034073 Lolium perenne HOM04x5M005388 ORTHO04x5M007148 0.0e+00 1345.5 725 95.2
Bradi2g10040 Brachypodium distachyon HOM04x5M005388 ORTHO04x5M007148 0.0e+00 1315.8 724 93.1
HORVU3Hr1G038050 Hordeum vulgare HOM04x5M005388 ORTHO04x5M007148 0.0e+00 1310.4 677 98.4
LOC_Os01g16290 Oryza sativa ssp. japonica HOM04x5M005388 ORTHO04x5M007148 0.0e+00 1239.9 730 87.9
OsR498G0100627500.01 Oryza sativa ssp. indica HOM04x5M005388 ORTHO04x5M007148 0.0e+00 1239.9 730 87.9
Misin06G107400 Miscanthus sinensis HOM04x5M005388 ORTHO04x5M007148 0.0e+00 1232.2 728 87.0
Misin05G123900 Miscanthus sinensis HOM04x5M005388 ORTHO04x5M007148 0.0e+00 1226.5 728 87.1
Sobic.003G125900 Sorghum bicolor HOM04x5M005388 ORTHO04x5M007148 0.0e+00 1223.8 731 86.9
Seita.5G048400 Setaria italica HOM04x5M005388 ORTHO04x5M007148 0.0e+00 1192.6 660 91.1
OB01G20820 Oryza brachyantha HOM04x5M005388 ORTHO04x5M007148 0.0e+00 1190.3 660 90.8
Zm00007a00011064 Zea mays B104 HOM04x5M005388 ORTHO04x5M007148 0.0e+00 1177.5 731 84.4
Oropetium_20150105_09653 Oropetium thomaeum HOM04x5M005388 ORTHO04x5M007148 0.0e+00 1155.6 729 82.0
Sspon.03G0016850-1A Saccharum spontaneum HOM04x5M005388 ORTHO04x5M007148 0.0e+00 1150.2 736 82.3
LP006554 Lolium perenne HOM04x5M005388 ORTHO04x5M007148 0.0e+00 1141.3 694 86.2
Aco014991 Ananas comosus HOM04x5M005388 ORTHO04x5M007148 0.0e+00 1122.1 729 77.9
Ma10_g12880 Musa acuminata HOM04x5M005388 ORTHO04x5M007148 0.0e+00 1114.0 729 77.0
evm.TU.AsparagusV1_07.1717.V1.1 Asparagus officinalis HOM04x5M005388 ORTHO04x5M007148 0.0e+00 1099.0 686 80.0
Spipo29G0006100 Spirodela polyrhiza HOM04x5M005388 ORTHO04x5M007148 0.0e+00 1083.6 661 81.1
ASH_gene8619 Apostasia shenzhenica HOM04x5M005388 ORTHO04x5M007148 0.0e+00 1075.5 726 75.8
GSVIVG01033639001 Vitis vinifera HOM04x5M005388 ORTHO04x5M007148 0.0e+00 1075.5 670 79.6
ATR0759G018 Amborella trichopoda HOM04x5M005388 ORTHO04x5M007148 8.6e-311 1068.5 695 76.4
CALSI_Maker00044897 Calamus simplicifolius HOM04x5M005388 ORTHO04x5M007148 7.6e-307 1055.4 752 72.7
AT3G10270 Arabidopsis thaliana HOM04x5M005388 ORTHO04x5M007148 1.3e-303 1044.6 723 73.4
Zosma62g00210 Zostera marina HOM04x5M005388 ORTHO04x5M007148 8.7e-303 1042.0 703 74.1
PEQU_33484 Phalaenopsis equestris HOM04x5M005388 ORTHO04x5M007148 7.3e-302 1038.9 668 77.4
Solyc12g021230.1 Solanum lycopersicum HOM04x5M005388 ORTHO04x5M007148 1.2e-299 1031.6 728 72.7
AT5G04130 Arabidopsis thaliana HOM04x5M005388 ORTHO04x5M007148 2.6e-299 1030.4 742 71.6
Potri.006G039400 Populus trichocarpa HOM04x5M005388 ORTHO04x5M007148 2.8e-277 957.2 718 68.5
Pp3c19_5200 Physcomitrium patens HOM04x5M005388 ORTHO04x5M007148 7.9e-272 939.1 664 68.1
Pp3c22_3710 Physcomitrium patens HOM04x5M005388 ORTHO04x5M007148 1.5e-270 934.9 664 67.8
Mapoly0001s0398 Marchantia polymorpha HOM04x5M005388 ORTHO04x5M007148 2.0e-267 924.5 643 69.4
gene4693 Selaginella moellendorffii HOM04x5M005388 ORTHO04x5M007148 9.1e-260 899.0 663 66.8
gene34990 Selaginella moellendorffii HOM04x5M005388 ORTHO04x5M007148 1.7e-258 894.8 731 63.1
Sspon.03G0016850-2B Saccharum spontaneum HOM04x5M005388 ORTHO04x5M007148 1.8e-244 848.2 517 84.1
Zm00001d040416 Zea mays B73 HOM04x5M005388 ORTHO04x5M007148 6.4e-213 743.4 470 83.2
MCO09G035 Micromonas commoda HOM04x5M005388 ORTHO04x5M007148 9.5e-209 729.6 652 56.9
Zm00008a011552 Zea mays PH207 HOM04x5M005388 ORTHO04x5M007148 1.6e-208 728.8 727 59.7
Zjn_sc00043.1.g02500.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM04x5M005388 ORTHO04x5M007148 4.4e-198 694.1 659 59.9
Potri.016G036200 Populus trichocarpa HOM04x5M005388 ORTHO04x5M007148 3.3e-193 677.9 508 69.5
Cre10.g440750 Chlamydomonas reinhardtii HOM04x5M005388 ORTHO04x5M007148 1.5e-177 625.9 797 46.0
Pgl_GLEAN_10021283 Cenchrus americanus HOM04x5M005388 ORTHO04x5M007148 7.2e-156 553.9 608 54.8
PAB00013877 Picea abies HOM04x5M005388 ORTHO04x5M007148 2.8e-91 339.3 198 82.8
Potri.016G036166 Populus trichocarpa HOM04x5M005388 ORTHO04x5M007148 2.4e-87 326.2 178 86.5
TRITD3Av1G089850 Triticum turgidum HOM04x5M005388 ORTHO04x5M007148 5.2e-82 308.5 154 98.1
PH01002203G0260 Phyllostachys edulis HOM04x5M005388 ORTHO04x5M007148 6.4e-80 301.6 285 64.6
AT5G04110 Arabidopsis thaliana HOM04x5M005388 ORTHO04x5M007148 2.3e-69 266.5 251 55.0
PAB00011739 Picea abies HOM04x5M005388 ORTHO04x5M007148 1.1e-68 264.2 185 68.6
PH01000094G1610 Phyllostachys edulis HOM04x5M005388 ORTHO04x5M007148 3.5e-54 216.1 120 86.7
PAB00021343 Picea abies HOM04x5M005388 ORTHO04x5M007148 4.8e-35 152.5 119 66.4
PAB00023953 Picea abies HOM04x5M001304 ORTHO04x5M002223 6.9e-34 148.7 637 25.4
Zm00001d051542 Zea mays B73 HOM04x5M001304 ORTHO04x5M002223 9.4e-31 138.3 575 27.0
Zm00008a017029 Zea mays PH207 HOM04x5M001304 ORTHO04x5M002223 9.4e-31 138.3 575 27.0
Ma06_g02860 Musa acuminata HOM04x5M001304 ORTHO04x5M002223 1.6e-30 137.5 623 24.7
HORVU6Hr1G067930 Hordeum vulgare HOM04x5M001304 ORTHO04x5M002223 2.1e-30 137.1 622 25.2
Zm00007a00022230 Zea mays B104 HOM04x5M001304 ORTHO04x5M002223 2.1e-30 137.1 573 26.7
MCO05G739 Micromonas commoda HOM04x5M001304 ORTHO04x5M002223 2.7e-30 136.7 623 25.7
TraesCS6B02G295700 Triticum aestivum HOM04x5M001304 ORTHO04x5M002223 2.7e-30 136.7 622 24.9
Ma05_g03540 Musa acuminata HOM04x5M001304 ORTHO04x5M002223 4.7e-30 136.0 572 25.3
PEQU_07444 Phalaenopsis equestris HOM04x5M001304 ORTHO04x5M002223 1.0e-29 134.8 699 24.9
AT3G23890 Arabidopsis thaliana HOM04x5M001304 ORTHO04x5M002223 1.4e-29 134.4 702 25.1
Sobic.004G271300 Sorghum bicolor HOM04x5M001304 ORTHO04x5M002223 1.8e-29 134.0 569 25.5
Potri.009G058900 Populus trichocarpa HOM04x5M001304 ORTHO04x5M002223 3.9e-29 132.9 693 23.8
Misin08G251500 Miscanthus sinensis HOM04x5M001304 ORTHO04x5M002223 5.2e-29 132.5 572 26.2
Potri.001G264000 Populus trichocarpa HOM04x5M001304 ORTHO04x5M002223 6.7e-29 132.1 653 23.7
TraesCS1B02G271100 Triticum aestivum HOM04x5M001304 ORTHO04x5M002223 6.7e-29 132.1 586 25.6
TRITD1Bv1G150840 Triticum turgidum HOM04x5M001304 ORTHO04x5M002223 6.7e-29 132.1 586 25.6
Misin07G455800 Miscanthus sinensis HOM04x5M001304 ORTHO04x5M002223 8.8e-29 131.7 621 26.1
TraesCS1D02G260500 Triticum aestivum HOM04x5M001304 ORTHO04x5M002223 8.8e-29 131.7 582 25.3
Cre01.g009250 Chlamydomonas reinhardtii HOM04x5M001304 ORTHO04x5M002223 1.1e-28 131.3 696 25.4
p5.00_sc00075_p0055 Elaeis guineensis HOM04x5M001304 ORTHO04x5M002223 1.5e-28 131.0 571 26.1
Zosma39g00230 Zostera marina HOM04x5M001304 ORTHO04x5M002223 2.0e-28 130.6 622 24.6
Sspon.04G0005560-4D Saccharum spontaneum HOM04x5M001304 ORTHO04x5M002223 3.3e-28 129.8 572 26.7
TraesCS1A02G260500 Triticum aestivum HOM04x5M001304 ORTHO04x5M002223 3.3e-28 129.8 569 25.5
TRITD1Av1G165100 Triticum turgidum HOM04x5M001304 ORTHO04x5M002223 3.3e-28 129.8 569 25.5
LOC_Os02g47150 Oryza sativa ssp. japonica HOM04x5M001304 ORTHO04x5M002223 5.7e-28 129.0 631 25.4
OsR498G0204598600.01 Oryza sativa ssp. indica HOM04x5M001304 ORTHO04x5M002223 5.7e-28 129.0 631 25.4
TRITD6Bv1G156950 Triticum turgidum HOM04x5M001304 ORTHO04x5M002223 5.7e-28 129.0 622 24.3
Zm00007a00017380 Zea mays B104 HOM04x5M001304 ORTHO04x5M002223 5.7e-28 129.0 627 25.5
Zm00008a022725 Zea mays PH207 HOM04x5M001304 ORTHO04x5M002223 5.7e-28 129.0 627 25.5
GSVIVG01032138001 Vitis vinifera HOM04x5M001304 ORTHO04x5M002223 9.7e-28 128.3 634 25.6
Zm00001d017720 Zea mays B73 HOM04x5M001304 ORTHO04x5M002223 9.7e-28 128.3 575 25.9
Seita.1G284800 Setaria italica HOM04x5M001304 ORTHO04x5M002223 1.7e-27 127.5 623 25.7
Sspon.04G0005560-3C Saccharum spontaneum HOM04x5M001304 ORTHO04x5M002223 2.2e-27 127.1 597 25.0
TraesCS6D02G246300 Triticum aestivum HOM04x5M001304 ORTHO04x5M002223 2.8e-27 126.7 570 25.3
Aco015983 Ananas comosus HOM04x5M001304 ORTHO04x5M002223 4.8e-27 125.9 631 24.6
LP016242 Lolium perenne HOM04x5M001304 ORTHO04x5M002223 6.3e-27 125.6 633 25.0
OB02G36210 Oryza brachyantha HOM04x5M001304 ORTHO04x5M002223 6.3e-27 125.6 578 25.6
Solyc01g087500.2 Solanum lycopersicum HOM04x5M001304 ORTHO04x5M002223 6.3e-27 125.6 650 23.4
TraesCS6A02G268600 Triticum aestivum HOM04x5M001304 ORTHO04x5M002223 1.1e-26 124.8 636 24.7
gene30687 Selaginella moellendorffii HOM04x5M001304 ORTHO04x5M002223 2.4e-26 123.6 529 26.8
Bradi3g52470 Brachypodium distachyon HOM04x5M001304 ORTHO04x5M002223 7.0e-26 122.1 574 26.0
PAB00050433 Picea abies HOM04x5M001304 ORTHO04x5M002223 7.0e-26 122.1 635 25.0
TRITD6Av1G170670 Triticum turgidum HOM04x5M001304 ORTHO04x5M002223 7.0e-26 122.1 636 24.5
evm.TU.AsparagusV1_04.918.V1.1 Asparagus officinalis HOM04x5M001304 ORTHO04x5M002223 9.1e-26 121.7 573 24.8
PH01000690G0430 Phyllostachys edulis HOM04x5M001304 ORTHO04x5M002223 9.1e-26 121.7 624 26.0
PAB00022221 Picea abies HOM04x5M001304 ORTHO04x5M002223 2.0e-25 120.6 573 25.0
Spipo8G0027100 Spirodela polyrhiza HOM04x5M001304 ORTHO04x5M002223 2.0e-25 120.6 621 24.3
ASH_gene4260 Apostasia shenzhenica HOM04x5M001304 ORTHO04x5M002223 4.5e-25 119.4 716 24.0
Pgl_GLEAN_10010689 Cenchrus americanus HOM04x5M001304 ORTHO04x5M002223 5.9e-25 119.0 625 25.0
ATR0332G038 Amborella trichopoda HOM04x5M001304 ORTHO04x5M002223 1.7e-24 117.5 663 24.3
Pp3c18_20261 Physcomitrium patens HOM04x5M001304 ORTHO04x5M002223 2.2e-24 117.1 580 26.7
Pp3c18_20260 Physcomitrium patens HOM04x5M001304 ORTHO04x5M002223 2.2e-24 117.1 580 26.7
Pp3c19_3610 Physcomitrium patens HOM04x5M001304 ORTHO04x5M002223 2.9e-24 116.7 661 25.3
Mapoly0050s0134 Marchantia polymorpha HOM04x5M001304 ORTHO04x5M002223 5.0e-24 115.9 728 23.2
gene13922 Selaginella moellendorffii HOM04x5M001304 ORTHO04x5M002223 3.2e-23 113.2 547 25.8
Sspon.04G0023350-1B Saccharum spontaneum HOM04x5M001304 ORTHO04x5M002223 8.2e-19 98.6 499 26.5
Sspon.04G0005560-1A Saccharum spontaneum HOM04x5M001304 ORTHO04x5M002223 8.2e-19 98.6 499 26.5
gene37683 Selaginella moellendorffii HOM04x5M001304 ORTHO04x5M002223 2.7e-17 93.6 282 29.1
CALSI_Maker00031687 Calamus simplicifolius HOM04x5M001304 ORTHO04x5M002223 1.9e-15 87.4 314 25.8
PH01001295G0450 Phyllostachys edulis HOM04x5M001304 ORTHO04x5M002223 3.2e-15 86.7 317 26.5
Zjn_sc00007.1.g07940.1.sm.mk Zoysia japonica ssp. nagirizaki HOM04x5M001304 ORTHO04x5M002223 2.2e-11 73.9 255 28.6
CALSI_Maker00012591 Calamus simplicifolius HOM04x5M005388 ORTHO04x5M000070 4.1e-10 69.7 38 76.3
CALSI_Maker00028955 Calamus simplicifolius HOM04x5M013539 ORTHO04x5M005048 9.1e-10 68.6 37 86.5
CALSI_Maker00018767 Calamus simplicifolius HOM04x5M013539 ORTHO04x5M005048 9.1e-10 68.6 37 86.5
CALSI_Maker00028315 Calamus simplicifolius HOM04x5M013539 ORTHO04x5M005048 9.1e-10 68.6 37 86.5
CALSI_Maker00028036 Calamus simplicifolius HOM04x5M013539 ORTHO04x5M005048 9.1e-10 68.6 37 86.5
Misin16G182500 Miscanthus sinensis HOM04x5M001304 ORTHO04x5M002223 1.3e-08 64.7 147 31.3
CALSI_Maker00035828 Calamus simplicifolius HOM04x5M013539 ORTHO04x5M005048 1.7e-08 64.3 34 88.2
Sobic.010G141400 Sorghum bicolor HOM04x5M001304 ORTHO04x5M002223 6.5e-08 62.4 143 30.8
CALSI_Maker00015971 Calamus simplicifolius HOM04x5M000001 ORTHO04x5M009411 1.6e-06 57.8 31 90.3
ASH_gene1356 Apostasia shenzhenica HOM04x5M005388 ORTHO04x5M043573 8.0e-06 55.5 37 78.4

Amborella trichopoda (2 genes)
Ananas comosus (2 genes)
Apostasia shenzhenica (3 genes)
Arabidopsis thaliana (4 genes)
Asparagus officinalis (2 genes)
Brachypodium distachyon (2 genes)
Calamus simplicifolius (9 genes)
Cenchrus americanus (2 genes)
Chlamydomonas reinhardtii (2 genes)
Elaeis guineensis (1 genes)
Hordeum vulgare (2 genes)
Lolium perenne (3 genes)
Marchantia polymorpha (2 genes)
Micromonas commoda (2 genes)
Miscanthus sinensis (5 genes)
Musa acuminata (3 genes)
Oropetium thomaeum (1 genes)
Oryza brachyantha (2 genes)
Oryza sativa ssp. indica (2 genes)
Oryza sativa ssp. japonica (2 genes)
Phalaenopsis equestris (2 genes)
Phyllostachys edulis (4 genes)
Physcomitrium patens (5 genes)
Picea abies (6 genes)
Populus trichocarpa (5 genes)
Saccharum spontaneum (6 genes)
Selaginella moellendorffii (5 genes)
Setaria italica (2 genes)
Solanum lycopersicum (2 genes)
Sorghum bicolor (3 genes)
Spirodela polyrhiza (2 genes)
Triticum aestivum (9 genes)
Triticum turgidum (6 genes)
Vitis vinifera (2 genes)
Zea mays B73 (3 genes)
Zea mays B104 (3 genes)
Zea mays PH207 (3 genes)
Zostera marina (2 genes)
Zoysia japonica ssp. nagirizaki (2 genes)

Program Settings