Monocots PLAZA 4.5 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Sspon.07G0030100-1P	Saccharum spontaneum	HOM04x5M007821	ORTHO04x5M000113	2.7e-203	711.1	546	100.0
Sspon.01G0057880-1D	Saccharum spontaneum	HOM04x5M001337	ORTHO04x5M000113	8.9e-58	227.6	131	90.1
Sspon.02G0056970-1D	Saccharum spontaneum	HOM04x5M001048	ORTHO04x5M000113	4.9e-56	221.9	132	87.9
Sspon.05G0023260-1B	Saccharum spontaneum	HOM04x5M000347	ORTHO04x5M000113	3.2e-55	219.2	132	87.1
Sspon.08G0019270-2C	Saccharum spontaneum	HOM04x5M000347	ORTHO04x5M000113	7.8e-54	214.5	132	84.1
Sspon.07G0026360-1B	Saccharum spontaneum	HOM04x5M007821	ORTHO04x5M000964	1.9e-52	209.9	132	82.6
Sspon.05G0023260-2D	Saccharum spontaneum	HOM04x5M007821	ORTHO04x5M000113	1.9e-52	209.9	132	82.6
Sspon.01G0063410-1D	Saccharum spontaneum	HOM04x5M000347	ORTHO04x5M000113	1.9e-52	209.9	132	82.6
Sspon.08G0019270-1B	Saccharum spontaneum	HOM04x5M007821	ORTHO04x5M000113	1.2e-51	207.2	132	81.1
Sspon.08G0008700-1A	Saccharum spontaneum	HOM04x5M007821	ORTHO04x5M000113	6.2e-51	204.9	161	70.2
Sspon.08G0030860-1D	Saccharum spontaneum	HOM04x5M000347	ORTHO04x5M000113	3.2e-47	192.6	132	78.0
Sspon.03G0016330-3D	Saccharum spontaneum	HOM04x5M000145	ORTHO04x5M000113	1.9e-44	183.3	137	68.6
Sspon.03G0017870-1A	Saccharum spontaneum	HOM04x5M000347	ORTHO04x5M000113	6.4e-40	168.3	132	64.4
Sspon.03G0040640-2D	Saccharum spontaneum	HOM04x5M006566	ORTHO04x5M000113	2.4e-39	166.4	184	56.5
Misin16G246100	Miscanthus sinensis	HOM04x5M007821	ORTHO04x5M000113	1.3e-27	127.5	82	86.6
Sspon.07G0026110-1B	Saccharum spontaneum	HOM04x5M000347	ORTHO04x5M000113	9.0e-26	121.3	67	89.6
Sspon.07G0020830-1A	Saccharum spontaneum	HOM04x5M000347	ORTHO04x5M000113	2.2e-24	116.7	137	52.6
Sspon.03G0041440-1C	Saccharum spontaneum	HOM04x5M001048	ORTHO04x5M000113	5.6e-20	102.1	59	88.1
Zm00008a038957	Zea mays PH207	HOM04x5M000291	ORTHO04x5M000253	5.8e-09	65.5	124	39.5
Pgl_GLEAN_10033452	Cenchrus americanus	HOM04x5M000291	ORTHO04x5M000253	1.2e-06	57.8	142	31.7
Pgl_GLEAN_10024947	Cenchrus americanus	HOM04x5M000291	ORTHO04x5M000253	1.6e-06	57.4	112	33.9
Pgl_GLEAN_10025699	Cenchrus americanus	HOM04x5M000291	ORTHO04x5M000253	2.7e-06	56.6	105	36.2
Pgl_GLEAN_10021201	Cenchrus americanus	HOM04x5M000291	ORTHO04x5M000253	3.5e-06	56.2	114	36.0
Pgl_GLEAN_10022349	Cenchrus americanus	HOM04x5M000291	ORTHO04x5M000253	3.5e-06	56.2	119	34.5
Pgl_GLEAN_10016560	Cenchrus americanus	HOM04x5M000291	ORTHO04x5M000253	3.5e-06	56.2	99	36.4
Pgl_GLEAN_10034323	Cenchrus americanus	HOM04x5M000291	ORTHO04x5M000253	4.6e-06	55.8	119	33.6
Pgl_GLEAN_10001890	Cenchrus americanus	HOM04x5M000291	ORTHO04x5M000253	4.6e-06	55.8	120	33.3
Pgl_GLEAN_10005224	Cenchrus americanus	HOM04x5M000291	ORTHO04x5M000253	4.6e-06	55.8	114	34.2
Pgl_GLEAN_10004698	Cenchrus americanus	HOM04x5M000291	ORTHO04x5M000253	6.1e-06	55.5	100	35.0
Pgl_GLEAN_10007667	Cenchrus americanus	HOM04x5M000291	ORTHO04x5M000253	6.1e-06	55.5	100	35.0
Pgl_GLEAN_10011758	Cenchrus americanus	HOM04x5M000291	ORTHO04x5M000253	7.9e-06	55.1	119	34.5
Pgl_GLEAN_10027213	Cenchrus americanus	HOM04x5M000291	ORTHO04x5M000253	7.9e-06	55.1	100	35.0
Pgl_GLEAN_10020567	Cenchrus americanus	HOM04x5M000291	ORTHO04x5M000253	7.9e-06	55.1	100	35.0
Pgl_GLEAN_10027920	Cenchrus americanus	HOM04x5M000291	ORTHO04x5M000253	7.9e-06	55.1	129	34.1

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment