Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Sspon.02G0020200-4D	Saccharum spontaneum	HOM04x5M005046	ORTHO04x5M006164	2.3e-222	773.9	373	100.0
Sspon.02G0020200-1A	Saccharum spontaneum	HOM04x5M005046	ORTHO04x5M006164	4.3e-221	769.6	373	99.5
Misin04G109200	Miscanthus sinensis	HOM04x5M005046	ORTHO04x5M006164	5.8e-218	759.2	377	96.8
Sobic.002G112700	Sorghum bicolor	HOM04x5M005046	ORTHO04x5M006164	9.9e-218	758.4	377	96.8
Misin03G098200	Miscanthus sinensis	HOM04x5M005046	ORTHO04x5M006164	2.4e-216	753.8	377	96.3
Seita.2G110200	Setaria italica	HOM04x5M005046	ORTHO04x5M006164	6.0e-215	749.2	377	95.5
Zm00001d005157	Zea mays B73	HOM04x5M005046	ORTHO04x5M006164	2.5e-213	743.8	377	95.2
Zm00008a008470	Zea mays PH207	HOM04x5M005046	ORTHO04x5M006164	2.5e-213	743.8	377	95.2
Sspon.02G0020200-3C	Saccharum spontaneum	HOM04x5M005046	ORTHO04x5M006164	2.3e-206	720.7	373	94.6
HORVU3Hr1G013640	Hordeum vulgare	HOM04x5M005046	ORTHO04x5M006164	5.3e-203	709.5	377	88.9
OB07G13280	Oryza brachyantha	HOM04x5M005046	ORTHO04x5M006164	1.5e-202	708.0	377	89.4
LOC_Os07g07260	Oryza sativa ssp. japonica	HOM04x5M005046	ORTHO04x5M006164	7.6e-202	705.7	377	89.4
OsR498G0713585300.01	Oryza sativa ssp. indica	HOM04x5M005046	ORTHO04x5M006164	1.3e-201	704.9	377	89.4
TraesCS3A02G076400	Triticum aestivum	HOM04x5M005046	ORTHO04x5M006164	1.7e-201	704.5	377	88.3
TRITD3Av1G021090	Triticum turgidum	HOM04x5M005046	ORTHO04x5M006164	1.7e-201	704.5	377	88.3
TraesCS3B02G090300	Triticum aestivum	HOM04x5M005046	ORTHO04x5M006164	2.2e-201	704.1	377	88.3
TRITD3Bv1G024720	Triticum turgidum	HOM04x5M005046	ORTHO04x5M006164	2.2e-201	704.1	377	88.3
LP027001	Lolium perenne	HOM04x5M005046	ORTHO04x5M006164	2.9e-201	703.7	377	87.5
TraesCS3D02G076500	Triticum aestivum	HOM04x5M005046	ORTHO04x5M006164	6.4e-201	702.6	377	88.1
Bradi1g29020	Brachypodium distachyon	HOM04x5M005046	ORTHO04x5M006164	1.8e-198	694.5	377	87.0
PH01002232G0290	Phyllostachys edulis	HOM04x5M005046	ORTHO04x5M006164	5.6e-197	689.5	407	83.0
Aco003438	Ananas comosus	HOM04x5M005046	ORTHO04x5M006164	1.4e-192	674.9	377	83.6
p5.00_sc00006_p0154	Elaeis guineensis	HOM04x5M005046	ORTHO04x5M006164	7.4e-189	662.5	377	82.5
CALSI_Maker00005878	Calamus simplicifolius	HOM04x5M005046	ORTHO04x5M006164	4.8e-188	659.8	377	81.7
Ma02_g07730	Musa acuminata	HOM04x5M005046	ORTHO04x5M006164	5.9e-186	652.9	377	80.1
Spipo4G0085100	Spirodela polyrhiza	HOM04x5M005046	ORTHO04x5M006164	2.7e-183	644.0	377	79.6
Zosma8g00780	Zostera marina	HOM04x5M005046	ORTHO04x5M006164	6.1e-183	642.9	377	79.8
evm.TU.AsparagusV1_07.3669.V1.1	Asparagus officinalis	HOM04x5M005046	ORTHO04x5M006164	3.3e-181	637.1	377	79.6
Oropetium_20150105_11453	Oropetium thomaeum	HOM04x5M005046	ORTHO04x5M006164	3.8e-177	623.6	321	94.1
PEQU_08732	Phalaenopsis equestris	HOM04x5M005046	ORTHO04x5M006164	8.5e-177	622.5	376	77.7
ASH_gene8283	Apostasia shenzhenica	HOM04x5M005046	ORTHO04x5M006164	2.3e-174	614.4	376	76.9
ATR1098G082	Amborella trichopoda	HOM04x5M005046	ORTHO04x5M006164	2.5e-168	594.3	377	74.0
Potri.001G087400	Populus trichocarpa	HOM04x5M005046	ORTHO04x5M006164	3.0e-166	587.4	377	74.0
GSVIVG01019608001	Vitis vinifera	HOM04x5M005046	ORTHO04x5M006164	3.9e-166	587.0	378	74.6
Potri.003G143700	Populus trichocarpa	HOM04x5M005046	ORTHO04x5M006164	5.2e-166	586.6	377	73.7
Solyc08g082830.2	Solanum lycopersicum	HOM04x5M005046	ORTHO04x5M006164	8.2e-164	579.3	377	73.7
AT1G55090	Arabidopsis thaliana	HOM04x5M005046	ORTHO04x5M006164	2.2e-161	571.2	377	71.1
Zm00007a00051183	Zea mays B104	HOM04x5M005046	ORTHO04x5M006164	2.5e-144	514.6	264	94.3
gene17841	Selaginella moellendorffii	HOM04x5M005046	ORTHO04x5M006164	5.7e-141	503.4	378	63.0
gene29750	Selaginella moellendorffii	HOM04x5M005046	ORTHO04x5M006164	7.5e-141	503.1	378	63.2
Mapoly0035s0052	Marchantia polymorpha	HOM04x5M005046	ORTHO04x5M006164	2.4e-139	498.0	381	64.3
MCO17G006	Micromonas commoda	HOM04x5M005046	ORTHO04x5M006164	5.0e-137	490.3	374	62.6
gene4078	Selaginella moellendorffii	HOM04x5M005046	ORTHO04x5M006164	6.2e-127	456.8	378	58.7
gene12860	Selaginella moellendorffii	HOM04x5M005046	ORTHO04x5M006164	1.4e-126	455.7	378	58.5
Cre10.g435250	Chlamydomonas reinhardtii	HOM04x5M005046	ORTHO04x5M006164	3.0e-121	438.0	407	55.5
Pp3c17_21910	Physcomitrium patens	HOM04x5M005046	ORTHO04x5M006164	3.6e-111	404.4	310	61.9
Zjn_sc00077.1.g00130.1.am.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M005046	ORTHO04x5M006164	2.7e-58	228.8	237	54.0
Pgl_GLEAN_10033649	Cenchrus americanus	HOM04x5M005046	ORTHO04x5M006164	1.1e-30	137.1	66	97.0
evm.TU.AsparagusV1_05.1844.V1.1	Asparagus officinalis	HOM04x5M001700	ORTHO04x5M004467	2.9e-23	112.5	66	74.2
PAB00015820	Picea abies	HOM04x5M005046	ORTHO04x5M006164	2.7e-21	105.9	55	89.1
PAB00013173	Picea abies	HOM04x5M005046	ORTHO04x5M006164	7.3e-19	97.8	65	67.7

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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