Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Sspon.01G0000930-1A	Saccharum spontaneum	HOM04x5M003245	ORTHO04x5M005668	2.4e-77	290.8	152	100.0
Sspon.01G0000930-3D	Saccharum spontaneum	HOM04x5M003245	ORTHO04x5M005668	2.4e-77	290.8	152	100.0
Sspon.01G0000930-2C	Saccharum spontaneum	HOM04x5M003245	ORTHO04x5M005668	2.4e-77	290.8	152	100.0
Sspon.01G0000930-1P	Saccharum spontaneum	HOM04x5M003245	ORTHO04x5M005668	5.9e-76	286.2	152	98.0
Misin08G230600	Miscanthus sinensis	HOM04x5M003245	ORTHO04x5M005668	6.5e-75	282.7	151	98.0
Sobic.004G294700	Sorghum bicolor	HOM04x5M003245	ORTHO04x5M005668	1.8e-72	274.6	153	96.1
Seita.1G260300	Setaria italica	HOM04x5M003245	ORTHO04x5M005668	2.8e-70	267.3	154	91.6
Misin07G434300	Miscanthus sinensis	HOM04x5M003245	ORTHO04x5M005668	3.7e-70	266.9	152	93.4
Zm00001d017492	Zea mays B73	HOM04x5M003245	ORTHO04x5M005668	4.1e-69	263.5	154	91.6
Zm00007a00015682	Zea mays B104	HOM04x5M003245	ORTHO04x5M005668	4.1e-69	263.5	154	91.6
Sobic.001G303825	Sorghum bicolor	HOM04x5M003245	ORTHO04x5M005668	7.2e-66	252.7	152	90.8
TraesCS6A02G249800	Triticum aestivum	HOM04x5M003245	ORTHO04x5M005668	4.7e-65	250.0	152	87.5
TRITD6Av1G159240	Triticum turgidum	HOM04x5M003245	ORTHO04x5M005668	4.7e-65	250.0	152	87.5
HORVU6Hr1G063100	Hordeum vulgare	HOM04x5M003245	ORTHO04x5M005668	8.0e-65	249.2	152	86.8
Oropetium_20150105_21240	Oropetium thomaeum	HOM04x5M003245	ORTHO04x5M005668	1.0e-64	248.8	152	86.8
Zjn_sc00007.1.g10190.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M003245	ORTHO04x5M005668	1.8e-64	248.1	152	85.5
TraesCS6B02G275600	Triticum aestivum	HOM04x5M003245	ORTHO04x5M005668	3.0e-64	247.3	152	86.8
TraesCS6D02G231500	Triticum aestivum	HOM04x5M003245	ORTHO04x5M005668	3.0e-64	247.3	152	86.8
TRITD6Bv1G145190	Triticum turgidum	HOM04x5M003245	ORTHO04x5M005668	3.0e-64	247.3	152	86.8
PH01003305G0030	Phyllostachys edulis	HOM04x5M003245	ORTHO04x5M005668	5.7e-63	243.0	152	85.5
PH01000995G0530	Phyllostachys edulis	HOM04x5M003245	ORTHO04x5M005668	9.7e-63	242.3	149	87.9
LP006587	Lolium perenne	HOM04x5M003245	ORTHO04x5M005668	1.7e-62	241.5	152	83.6
OB02G33900	Oryza brachyantha	HOM04x5M003245	ORTHO04x5M005668	8.2e-62	239.2	152	83.6
OsR498G0204455800.01	Oryza sativa ssp. indica	HOM04x5M003245	ORTHO04x5M005668	1.2e-60	235.3	152	82.2
Bradi3g50726	Brachypodium distachyon	HOM04x5M003245	ORTHO04x5M005668	4.5e-60	233.4	152	80.9
LOC_Os02g44104	Oryza sativa ssp. japonica	HOM04x5M003245	ORTHO04x5M005668	1.3e-59	231.9	152	81.6
Ma04_g20220	Musa acuminata	HOM04x5M003245	ORTHO04x5M005668	5.7e-39	163.3	152	58.6
Aco012817	Ananas comosus	HOM04x5M003245	ORTHO04x5M005668	3.7e-38	160.6	152	57.9
p5.00_sc00002_p0220	Elaeis guineensis	HOM04x5M003245	ORTHO04x5M005668	6.3e-38	159.8	151	56.3
p5.00_sc00023_p0055	Elaeis guineensis	HOM04x5M003245	ORTHO04x5M005668	1.1e-37	159.1	151	55.6
Ma05_g13320	Musa acuminata	HOM04x5M003245	ORTHO04x5M005668	2.7e-36	154.5	152	55.9
Spipo11G0034400	Spirodela polyrhiza	HOM04x5M003245	ORTHO04x5M005668	7.0e-29	129.8	162	46.9
Ma04_g36850	Musa acuminata	HOM04x5M003245	ORTHO04x5M005668	1.2e-28	129.0	156	48.7
Spipo17G0022500	Spirodela polyrhiza	HOM04x5M003245	ORTHO04x5M005668	8.6e-27	122.9	153	45.1
PEQU_14480	Phalaenopsis equestris	HOM04x5M003245	ORTHO04x5M005668	3.1e-24	114.4	156	46.2
ASH_gene6044	Apostasia shenzhenica	HOM04x5M003245	ORTHO04x5M005668	8.9e-24	112.8	156	45.5
Spipo1G0082300	Spirodela polyrhiza	HOM04x5M003245	ORTHO04x5M005668	9.8e-23	109.4	161	42.2
CALSI_Maker00016894	Calamus simplicifolius	HOM04x5M003245	ORTHO04x5M005668	2.1e-20	101.7	86	57.0
Zosma85g00440	Zostera marina	HOM04x5M003245	ORTHO04x5M005668	1.1e-18	95.9	152	38.8
Solyc03g093310.2	Solanum lycopersicum	HOM04x5M003245	ORTHO04x5M005668	1.6e-17	92.0	155	42.6
Zosma85g00410	Zostera marina	HOM04x5M003245	ORTHO04x5M005668	2.8e-17	91.3	152	35.5
GSVIVG01014046001	Vitis vinifera	HOM04x5M003245	ORTHO04x5M005668	8.1e-17	89.7	154	39.6
Potri.003G107900	Populus trichocarpa	HOM04x5M003245	ORTHO04x5M005668	1.5e-15	85.5	157	39.5
Potri.001G125800	Populus trichocarpa	HOM04x5M003245	ORTHO04x5M005668	1.3e-14	82.4	152	38.8
ATR0317G122	Amborella trichopoda	HOM04x5M003245	ORTHO04x5M005668	4.9e-14	80.5	177	34.5
PAB00017842	Picea abies	HOM04x5M003245	ORTHO04x5M005668	4.9e-14	80.5	165	36.4
Pgl_GLEAN_10009580	Cenchrus americanus	HOM04x5M003245	ORTHO04x5M005668	6.4e-14	80.1	39	100.0
Zm00008a022532	Zea mays PH207	HOM04x5M003245	ORTHO04x5M005668	7.1e-13	76.6	39	97.4
Potri.002G143200	Populus trichocarpa	HOM04x5M003245	ORTHO04x5M005668	3.0e-11	71.2	158	34.2
Solyc01g095800.2	Solanum lycopersicum	HOM04x5M003245	ORTHO04x5M005668	1.1e-10	69.3	154	34.4
gene2101	Selaginella moellendorffii	HOM04x5M003245	ORTHO04x5M005668	1.9e-10	68.6	214	32.7
gene5137	Selaginella moellendorffii	HOM04x5M003245	ORTHO04x5M005668	1.9e-10	68.6	214	32.7
AT5G51380	Arabidopsis thaliana	HOM04x5M003245	ORTHO04x5M005668	6.2e-09	63.5	156	34.0
AT5G51370	Arabidopsis thaliana	HOM04x5M003245	ORTHO04x5M005668	5.2e-08	60.5	157	34.4
PAB00008675	Picea abies	HOM04x5M003245	ORTHO04x5M005668	2.9e-06	54.7	201	28.4

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment