Interactive Phylogenetics Module

Gene Id
Pp3c1_19310

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Include Gene ID Organism Homologous gene familyOrthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_19310 Physcomitrium patens HOM04x5M004591 ORTHO04x5M005491 0.0e+00 1240.3 645 100.0
Mapoly0084s0006 Marchantia polymorpha HOM04x5M004591 ORTHO04x5M005491 4.8e-127 458.0 546 48.7
gene9611 Selaginella moellendorffii HOM04x5M004591 ORTHO04x5M005491 1.5e-109 399.8 428 51.9
gene32722 Selaginella moellendorffii HOM04x5M004591 ORTHO04x5M005491 4.5e-109 398.3 428 51.2
Potri.015G022400 Populus trichocarpa HOM04x5M004591 ORTHO04x5M005491 7.7e-109 397.5 476 48.3
TraesCS5B02G022900 Triticum aestivum HOM04x5M004591 ORTHO04x5M005491 1.0e-108 397.1 565 43.0
Aco010714 Ananas comosus HOM04x5M004591 ORTHO04x5M005491 1.7e-108 396.4 543 42.5
OB12G26130 Oryza brachyantha HOM04x5M004591 ORTHO04x5M005491 5.0e-108 394.8 527 43.5
PEQU_13280 Phalaenopsis equestris HOM04x5M004591 ORTHO04x5M005491 2.5e-107 392.5 435 47.8
GSVIVG01028720001 Vitis vinifera HOM04x5M004591 ORTHO04x5M005491 3.2e-107 392.1 530 45.1
Solyc06g051900.2 Solanum lycopersicum HOM04x5M004591 ORTHO04x5M005491 5.5e-107 391.3 479 45.9
Zm00001d023817 Zea mays B73 HOM04x5M004591 ORTHO04x5M005491 2.7e-106 389.0 553 41.6
Seita.2G382200 Setaria italica HOM04x5M004591 ORTHO04x5M005491 4.7e-106 388.3 575 40.3
TRITD5Bv1G008000 Triticum turgidum HOM04x5M004591 ORTHO04x5M005491 4.7e-106 388.3 544 43.2
Zjn_sc00088.1.g00680.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM04x5M004591 ORTHO04x5M005491 1.4e-105 386.7 531 42.7
Zm00008a036741 Zea mays PH207 HOM04x5M004591 ORTHO04x5M005491 1.8e-105 386.3 547 41.7
Zosma222g00340 Zostera marina HOM04x5M004591 ORTHO04x5M005491 2.3e-105 386.0 553 42.5
Ma10_g14640 Musa acuminata HOM04x5M004591 ORTHO04x5M005491 3.0e-105 385.6 557 43.6
Misin14G119200 Miscanthus sinensis HOM04x5M004591 ORTHO04x5M005491 3.0e-105 385.6 529 42.2
Sobic.008G125100 Sorghum bicolor HOM04x5M004591 ORTHO04x5M005491 3.0e-105 385.6 526 42.2
LOC_Os12g42870 Oryza sativa ssp. japonica HOM04x5M004591 ORTHO04x5M005491 6.7e-105 384.4 531 42.0
Misin15G141500 Miscanthus sinensis HOM04x5M004591 ORTHO04x5M005491 1.1e-104 383.6 531 42.6
Bradi4g01215 Brachypodium distachyon HOM04x5M004591 ORTHO04x5M005491 2.6e-104 382.5 559 41.1
ATR0661G386 Amborella trichopoda HOM04x5M004591 ORTHO04x5M005491 4.4e-104 381.7 538 42.8
Sspon.02G0043910-3D Saccharum spontaneum HOM04x5M004591 ORTHO04x5M005491 5.7e-104 381.3 578 40.0
CALSI_Maker00046052 Calamus simplicifolius HOM04x5M004591 ORTHO04x5M005491 3.7e-103 378.6 579 41.8
Zm00008a012364 Zea mays PH207 HOM04x5M004591 ORTHO04x5M005491 4.8e-103 378.3 549 41.3
TRITD5Av1G009960 Triticum turgidum HOM04x5M004591 ORTHO04x5M005491 1.5e-99 366.7 440 46.1
AT5G41480 Arabidopsis thaliana HOM04x5M004591 ORTHO04x5M005491 1.9e-99 366.3 546 42.3
Oropetium_20150105_26144 Oropetium thomaeum HOM04x5M004591 ORTHO04x5M005491 7.0e-94 347.8 540 40.7
Zm00001d041625 Zea mays B73 HOM04x5M004591 ORTHO04x5M005491 2.0e-93 346.3 568 39.1
evm.TU.AsparagusV1_01.2651.V1.1 Asparagus officinalis HOM04x5M004591 ORTHO04x5M005491 2.7e-90 335.9 562 38.6
p5.00_sc00001_p0333 Elaeis guineensis HOM04x5M004591 ORTHO04x5M005491 6.8e-89 331.3 553 39.2
Pgl_GLEAN_10007040 Cenchrus americanus HOM04x5M004591 ORTHO04x5M005491 8.8e-89 330.9 573 37.3
TraesCS5A02G025100 Triticum aestivum HOM04x5M004591 ORTHO04x5M005491 7.0e-86 321.2 536 37.9
Spipo14G0021500 Spirodela polyrhiza HOM04x5M004591 ORTHO04x5M005491 2.0e-80 303.1 329 50.2
ASH_gene13367 Apostasia shenzhenica HOM04x5M004591 ORTHO04x5M005491 9.8e-80 300.8 557 37.5
TraesCS5D02G031500 Triticum aestivum HOM04x5M004591 ORTHO04x5M005491 1.8e-78 296.6 346 47.7
HORVU5Hr1G006850 Hordeum vulgare HOM04x5M004591 ORTHO04x5M005491 5.4e-78 295.0 557 33.9
Sspon.02G0043910-2C Saccharum spontaneum HOM04x5M004591 ORTHO04x5M005491 5.0e-76 288.5 552 35.5
CALSI_Maker00004256 Calamus simplicifolius HOM04x5M004591 ORTHO04x5M005491 8.6e-76 287.7 549 34.6
OsR498G1222137800.01 Oryza sativa ssp. indica HOM04x5M004591 ORTHO04x5M005491 1.4e-73 280.4 301 49.5
Zm00007a00028909 Zea mays B104 HOM04x5M004591 ORTHO04x5M005491 3.5e-69 265.8 285 48.8
Cre03.g176800 Chlamydomonas reinhardtii HOM04x5M004591 ORTHO04x5M005491 1.8e-65 253.4 499 36.3
CALSI_Maker00048144 Calamus simplicifolius HOM04x5M004591 ORTHO04x5M005491 6.4e-47 191.8 389 32.4
Sspon.02G0043910-1T Saccharum spontaneum HOM04x5M004591 ORTHO04x5M005491 4.7e-42 175.6 446 32.5
Zm00007a00021750 Zea mays B104 HOM04x5M004591 ORTHO04x5M005491 4.2e-38 162.5 182 46.2
PAB00014791 Picea abies HOM04x5M004591 ORTHO04x5M005491 4.4e-32 142.5 162 47.5
Potri.006G045400 Populus trichocarpa HOM04x5M002239 ORTHO04x5M002625 7.6e-32 141.7 403 30.8
MCO16G056 Micromonas commoda HOM04x5M004591 ORTHO04x5M005491 9.9e-32 141.4 240 38.3
MCO10G081 Micromonas commoda HOM04x5M002239 ORTHO04x5M002625 6.4e-31 138.7 387 31.5
Spipo6G0074700 Spirodela polyrhiza HOM04x5M002239 ORTHO04x5M002625 1.1e-30 137.9 334 35.3
ATR0721G042 Amborella trichopoda HOM04x5M002239 ORTHO04x5M002625 1.6e-29 134.0 348 32.2
Zosma129g00040 Zostera marina HOM04x5M002239 ORTHO04x5M002625 2.7e-29 133.3 350 31.7
p5.00_sc00032_p0096 Elaeis guineensis HOM04x5M002239 ORTHO04x5M002625 3.5e-29 132.9 367 30.2
gene850 Selaginella moellendorffii HOM04x5M002239 ORTHO04x5M002625 3.5e-29 132.9 340 32.6
gene852 Selaginella moellendorffii HOM04x5M002239 ORTHO04x5M002625 3.5e-29 132.9 340 32.6
CALSI_Maker00020637 Calamus simplicifolius HOM04x5M004591 ORTHO04x5M005491 4.6e-29 132.5 250 35.6
gene29954 Selaginella moellendorffii HOM04x5M002239 ORTHO04x5M002625 4.6e-29 132.5 346 33.5
gene1317 Selaginella moellendorffii HOM04x5M002239 ORTHO04x5M002625 6.0e-29 132.1 329 34.0
gene25554 Selaginella moellendorffii HOM04x5M002239 ORTHO04x5M002625 6.0e-29 132.1 329 34.0
gene16703 Selaginella moellendorffii HOM04x5M002239 ORTHO04x5M002625 1.3e-28 131.0 346 32.7
GSVIVG01033555001 Vitis vinifera HOM04x5M002239 ORTHO04x5M002625 1.3e-28 131.0 365 32.3
CALSI_Maker00039217 Calamus simplicifolius HOM04x5M002239 ORTHO04x5M002625 2.3e-28 130.2 373 30.0
Potri.016G041800 Populus trichocarpa HOM04x5M002239 ORTHO04x5M002625 5.1e-28 129.0 374 32.1
Zosma162g00210 Zostera marina HOM04x5M002239 ORTHO04x5M002625 1.1e-27 127.9 370 33.2
evm.TU.AsparagusV1_08.3611.V1.1 Asparagus officinalis HOM04x5M002239 ORTHO04x5M002625 1.5e-27 127.5 539 28.4
p5.00_sc00099_p0002 Elaeis guineensis HOM04x5M002239 ORTHO04x5M002625 1.5e-27 127.5 532 28.9
evm.TU.AsparagusV1_05.14.V1.1 Asparagus officinalis HOM04x5M002239 ORTHO04x5M002625 2.5e-27 126.7 249 35.7
Potri.008G060600 Populus trichocarpa HOM04x5M002239 ORTHO04x5M002625 5.6e-27 125.6 384 28.4
TRITD5Av1G257300 Triticum turgidum HOM04x5M002239 ORTHO04x5M002625 5.6e-27 125.6 364 30.5
AT3G10160 Arabidopsis thaliana HOM04x5M002239 ORTHO04x5M002625 7.3e-27 125.2 336 32.4
TraesCS4B02G392600 Triticum aestivum HOM04x5M002239 ORTHO04x5M002625 7.3e-27 125.2 358 30.4
Sobic.001G535500 Sorghum bicolor HOM04x5M002239 ORTHO04x5M002625 1.3e-26 124.4 341 33.4
Seita.9G571100 Setaria italica HOM04x5M002239 ORTHO04x5M002625 1.3e-26 124.4 442 28.7
Spipo27G0015800 Spirodela polyrhiza HOM04x5M002239 ORTHO04x5M002625 1.3e-26 124.4 246 36.2
TraesCSU02G034000 Triticum aestivum HOM04x5M002239 ORTHO04x5M002625 1.3e-26 124.4 358 30.2
HORVU4Hr1G089590 Hordeum vulgare HOM04x5M002239 ORTHO04x5M002625 2.8e-26 123.2 413 29.3
Ma06_g35910 Musa acuminata HOM04x5M002239 ORTHO04x5M002625 2.8e-26 123.2 340 32.9
Misin01G518000 Miscanthus sinensis HOM04x5M002239 ORTHO04x5M002625 3.6e-26 122.9 341 32.8
Sspon.01G0000640-2B Saccharum spontaneum HOM04x5M002239 ORTHO04x5M002625 3.6e-26 122.9 340 32.9
gene7721 Selaginella moellendorffii HOM04x5M002239 ORTHO04x5M002625 4.8e-26 122.5 526 28.3
Sspon.01G0000640-1A Saccharum spontaneum HOM04x5M002239 ORTHO04x5M002625 4.8e-26 122.5 340 32.6
Zjn_sc00092.1.g01510.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM04x5M002239 ORTHO04x5M002625 6.2e-26 122.1 180 40.6
Aco002379 Ananas comosus HOM04x5M002239 ORTHO04x5M002625 8.1e-26 121.7 380 30.8
Ma09_g03530 Musa acuminata HOM04x5M002239 ORTHO04x5M002625 8.1e-26 121.7 302 32.1
Zm00008a004043 Zea mays PH207 HOM04x5M002239 ORTHO04x5M002625 8.1e-26 121.7 333 31.2
Oropetium_20150105_09415 Oropetium thomaeum HOM04x5M002239 ORTHO04x5M002625 1.4e-25 120.9 173 42.2
OB10G22100 Oryza brachyantha HOM04x5M002239 ORTHO04x5M002625 1.8e-25 120.6 542 27.5
Solyc05g052920.2 Solanum lycopersicum HOM04x5M002239 ORTHO04x5M002625 1.8e-25 120.6 326 30.7
Sspon.01G0020910-3C Saccharum spontaneum HOM04x5M002239 ORTHO04x5M002625 2.4e-25 120.2 343 30.0
AT5G05980 Arabidopsis thaliana HOM04x5M002239 ORTHO04x5M002625 4.0e-25 119.4 317 32.2
TraesCS1B02G190700 Triticum aestivum HOM04x5M002239 ORTHO04x5M002625 4.0e-25 119.4 357 30.8
TRITD1Bv1G112470 Triticum turgidum HOM04x5M002239 ORTHO04x5M002625 4.0e-25 119.4 357 30.8
Zm00008a036205 Zea mays PH207 HOM04x5M002239 ORTHO04x5M002625 4.0e-25 119.4 335 32.2
LOC_Os03g02030 Oryza sativa ssp. japonica HOM04x5M002239 ORTHO04x5M002625 5.3e-25 119.0 173 41.6
OsR498G0305106600.01 Oryza sativa ssp. indica HOM04x5M002239 ORTHO04x5M002625 5.3e-25 119.0 173 41.6
Mapoly0010s0086 Marchantia polymorpha HOM04x5M002239 ORTHO04x5M002625 6.9e-25 118.6 549 27.9
OB03G10890 Oryza brachyantha HOM04x5M002239 ORTHO04x5M002625 6.9e-25 118.6 173 42.2
LP018771 Lolium perenne HOM04x5M004591 ORTHO04x5M005491 9.0e-25 118.2 258 34.1
Bradi1g77850 Brachypodium distachyon HOM04x5M002239 ORTHO04x5M002625 1.2e-24 117.9 183 39.3
TRITD1Av1G111900 Triticum turgidum HOM04x5M002239 ORTHO04x5M002625 1.5e-24 117.5 363 31.1
ASH_gene15508 Apostasia shenzhenica HOM04x5M002239 ORTHO04x5M002625 2.0e-24 117.1 205 39.5
ATR0559G016 Amborella trichopoda HOM04x5M002239 ORTHO04x5M002625 2.0e-24 117.1 206 38.3
Ma01_g05040 Musa acuminata HOM04x5M002239 ORTHO04x5M002625 2.0e-24 117.1 235 34.9
OsR498G1019001800.01 Oryza sativa ssp. indica HOM04x5M002239 ORTHO04x5M002625 2.0e-24 117.1 197 39.1
LP000959 Lolium perenne HOM04x5M002239 ORTHO04x5M002625 2.6e-24 116.7 225 36.4
Pp3c23_670 Physcomitrium patens HOM04x5M002239 ORTHO04x5M002625 2.6e-24 116.7 527 28.3
Pp3c24_9100 Physcomitrium patens HOM04x5M002239 ORTHO04x5M002625 3.4e-24 116.3 549 27.3
TraesCS1A02G173700 Triticum aestivum HOM04x5M002239 ORTHO04x5M002625 3.4e-24 116.3 361 30.7
Aco016849 Ananas comosus HOM04x5M002239 ORTHO04x5M002625 5.8e-24 115.5 185 40.5
Pgl_GLEAN_10021628 Cenchrus americanus HOM04x5M002239 ORTHO04x5M002625 9.9e-24 114.8 346 30.9
Seita.9G200900 Setaria italica HOM04x5M002239 ORTHO04x5M002625 9.9e-24 114.8 187 39.6
GSVIVG01016464001 Vitis vinifera HOM04x5M002239 ORTHO04x5M002625 9.9e-24 114.8 540 28.3
AT3G55630 Arabidopsis thaliana HOM04x5M002239 ORTHO04x5M002625 3.8e-23 112.8 211 38.9
Potri.010G197800 Populus trichocarpa HOM04x5M002239 ORTHO04x5M002625 3.8e-23 112.8 198 36.9
Misin02G507900 Miscanthus sinensis HOM04x5M002239 ORTHO04x5M002625 4.9e-23 112.5 518 28.2
Misin01G184500 Miscanthus sinensis HOM04x5M002239 ORTHO04x5M002625 8.4e-23 111.7 173 39.3
Sspon.01G0020910-2B Saccharum spontaneum HOM04x5M002239 ORTHO04x5M002625 1.1e-22 111.3 173 39.9
TraesCS1D02G165100 Triticum aestivum HOM04x5M002239 ORTHO04x5M002625 3.2e-22 109.8 198 37.9
Zm00007a00021748 Zea mays B104 HOM04x5M004591 ORTHO04x5M005491 3.2e-22 109.8 107 50.5
CALSI_Maker00013977 Calamus simplicifolius HOM04x5M002239 ORTHO04x5M002625 4.6e-21 105.9 264 32.2
Sspon.01G0000640-3C Saccharum spontaneum HOM04x5M002239 ORTHO04x5M002625 7.9e-21 105.1 158 41.8
Bradi3g30210 Brachypodium distachyon HOM04x5M002239 ORTHO04x5M002625 1.3e-20 104.4 230 35.7
PH01000955G0520 Phyllostachys edulis HOM04x5M004591 ORTHO04x5M005491 1.3e-20 104.4 237 32.1
PEQU_09314 Phalaenopsis equestris HOM04x5M002239 ORTHO04x5M002625 1.5e-19 100.9 194 35.6
Cre05.g239100 Chlamydomonas reinhardtii HOM04x5M002239 ORTHO04x5M002625 3.3e-19 99.8 253 31.2
Cre05.g239067 Chlamydomonas reinhardtii HOM04x5M002239 ORTHO04x5M002625 3.3e-19 99.8 253 31.2
Solyc04g016550.2 Solanum lycopersicum HOM04x5M002239 ORTHO04x5M002625 1.6e-18 97.4 205 35.6
Sspon.01G0020910-1A Saccharum spontaneum HOM04x5M002239 ORTHO04x5M002625 2.1e-18 97.1 304 28.9
Sspon.01G0020910-4D Saccharum spontaneum HOM04x5M002239 ORTHO04x5M002625 2.1e-18 97.1 173 37.0
CALSI_Maker00015974 Calamus simplicifolius HOM04x5M002239 ORTHO04x5M002625 1.4e-17 94.4 193 34.2
Oropetium_20150105_21336 Oropetium thomaeum HOM04x5M002239 ORTHO04x5M002625 4.0e-17 92.8 172 36.0
LOC_Os10g35940 Oryza sativa ssp. japonica HOM04x5M002239 ORTHO04x5M002625 4.5e-16 89.4 546 25.3
PAB00036996 Picea abies HOM04x5M004591 ORTHO04x5M005491 7.6e-16 88.6 86 54.7
MisinT096700 Miscanthus sinensis HOM04x5M004591 ORTHO04x5M005491 1.4e-14 84.3 69 55.1
Sobic.001G201900 Sorghum bicolor HOM04x5M002239 ORTHO04x5M002625 2.1e-13 80.5 173 32.4
Zm00001d048514 Zea mays B73 HOM04x5M002239 ORTHO04x5M002625 4.6e-13 79.3 337 29.4
Zm00007a00051220 Zea mays B104 HOM04x5M002239 ORTHO04x5M002625 5.1e-12 75.9 132 39.4
PAB00032154 Picea abies HOM04x5M004591 ORTHO04x5M005491 8.7e-12 75.1 60 58.3
CALSI_Maker00006600 Calamus simplicifolius HOM04x5M004591 ORTHO04x5M005491 4.8e-10 69.3 66 56.1
Pgl_GLEAN_10037820 Cenchrus americanus HOM04x5M002239 ORTHO04x5M002625 1.4e-09 67.8 95 42.1
PH01000012G0660 Phyllostachys edulis HOM04x5M002239 ORTHO04x5M002625 1.4e-09 67.8 84 47.6
PAB00049973 Picea abies HOM04x5M004591 ORTHO04x5M005491 2.4e-09 67.0 75 50.7
CALSI_Maker00045140 Calamus simplicifolius HOM04x5M002239 ORTHO04x5M002625 3.1e-09 66.6 117 37.6
HORVU1Hr1G045670 Hordeum vulgare HOM04x5M002239 ORTHO04x5M002625 3.1e-09 66.6 84 46.4
MisinT096800 Miscanthus sinensis HOM04x5M004591 ORTHO04x5M005491 4.1e-09 66.2 69 47.8
gene35885 Selaginella moellendorffii HOM04x5M002239 ORTHO04x5M002625 1.5e-08 64.3 58 51.7
Misin02G171600 Miscanthus sinensis HOM04x5M002239 ORTHO04x5M002625 2.0e-08 63.9 113 34.5
Zm00007a00051487 Zea mays B104 HOM04x5M002239 ORTHO04x5M002625 3.4e-08 63.2 111 34.2
PEQU_08658 Phalaenopsis equestris HOM04x5M002239 ORTHO04x5M002625 5.9e-08 62.4 106 41.5
Zm00001d032529 Zea mays B73 HOM04x5M002239 ORTHO04x5M002625 5.9e-08 62.4 111 34.2
Zm00007a00051700 Zea mays B104 HOM04x5M002239 ORTHO04x5M002625 1.0e-07 61.6 129 34.9

Amborella trichopoda (3 genes)
Ananas comosus (3 genes)
Apostasia shenzhenica (2 genes)
Arabidopsis thaliana (4 genes)
Asparagus officinalis (3 genes)
Brachypodium distachyon (3 genes)
Calamus simplicifolius (9 genes)
Cenchrus americanus (3 genes)
Chlamydomonas reinhardtii (3 genes)
Elaeis guineensis (3 genes)
Hordeum vulgare (3 genes)
Lolium perenne (2 genes)
Marchantia polymorpha (2 genes)
Micromonas commoda (2 genes)
Miscanthus sinensis (8 genes)
Musa acuminata (4 genes)
Oropetium thomaeum (3 genes)
Oryza brachyantha (3 genes)
Oryza sativa ssp. indica (3 genes)
Oryza sativa ssp. japonica (3 genes)
Phalaenopsis equestris (3 genes)
Phyllostachys edulis (2 genes)
Physcomitrium patens (3 genes)
Picea abies (4 genes)
Populus trichocarpa (5 genes)
Saccharum spontaneum (10 genes)
Selaginella moellendorffii (10 genes)
Setaria italica (3 genes)
Solanum lycopersicum (3 genes)
Sorghum bicolor (3 genes)
Spirodela polyrhiza (3 genes)
Triticum aestivum (8 genes)
Triticum turgidum (5 genes)
Vitis vinifera (3 genes)
Zea mays B73 (4 genes)
Zea mays B104 (6 genes)
Zea mays PH207 (4 genes)
Zostera marina (3 genes)
Zoysia japonica ssp. nagirizaki (2 genes)

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