Monocots PLAZA 4.5 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Pgl_GLEAN_10012920	Cenchrus americanus	HOM04x5M005753	ORTHO04x5M007082	5.7e-85	317.4	363	100.0
Sobic.003G317200	Sorghum bicolor	HOM04x5M005753	ORTHO04x5M007082	5.0e-81	304.3	360	56.7
Seita.5G340600	Setaria italica	HOM04x5M005753	ORTHO04x5M007082	8.5e-81	303.5	363	56.7
Misin05G292600	Miscanthus sinensis	HOM04x5M005753	ORTHO04x5M007082	9.4e-80	300.1	360	56.4
Zm00001d043269	Zea mays B73	HOM04x5M005753	ORTHO04x5M007082	3.6e-79	298.1	360	56.1
Zm00007a00050933	Zea mays B104	HOM04x5M005753	ORTHO04x5M007082	1.4e-78	296.2	360	55.8
Zm00001d012618	Zea mays B73	HOM04x5M005753	ORTHO04x5M007082	2.3e-78	295.4	360	55.6
Misin06G281600	Miscanthus sinensis	HOM04x5M005753	ORTHO04x5M007082	3.9e-78	294.7	360	55.8
Zm00007a00024916	Zea mays B104	HOM04x5M005753	ORTHO04x5M007082	2.6e-77	292.0	360	55.3
Zjn_sc00009.1.g09930.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M005753	ORTHO04x5M007082	8.2e-76	287.0	360	54.2
Zjn_sc00040.1.g01780.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M005753	ORTHO04x5M007082	5.3e-75	284.3	360	52.8
PH01000267G1150	Phyllostachys edulis	HOM04x5M005753	ORTHO04x5M007082	1.0e-73	280.0	363	52.1
Oropetium_20150105_12722	Oropetium thomaeum	HOM04x5M005753	ORTHO04x5M007082	1.7e-73	279.3	360	51.9
Bradi2g51800	Brachypodium distachyon	HOM04x5M005753	ORTHO04x5M007082	1.1e-72	276.6	364	51.1
LOC_Os01g57260	Oryza sativa ssp. japonica	HOM04x5M005753	ORTHO04x5M007082	2.7e-71	271.9	360	51.4
OsR498G0102101700.01	Oryza sativa ssp. indica	HOM04x5M005753	ORTHO04x5M007082	2.7e-71	271.9	360	51.4
LP036182	Lolium perenne	HOM04x5M005753	ORTHO04x5M007082	8.0e-71	270.4	358	51.4
PH01000109G1220	Phyllostachys edulis	HOM04x5M005753	ORTHO04x5M007082	1.5e-69	266.2	364	50.8
Zm00008a033108	Zea mays PH207	HOM04x5M005753	ORTHO04x5M007082	8.2e-68	260.4	341	53.1
OB01G42010	Oryza brachyantha	HOM04x5M000005	ORTHO04x5M000867	5.3e-67	257.7	351	50.7
Zm00008a013662	Zea mays PH207	HOM04x5M005753	ORTHO04x5M007082	6.3e-60	234.2	360	52.5
Aco014399	Ananas comosus	HOM04x5M005753	ORTHO04x5M007082	1.2e-55	219.9	361	44.6
p5.00_sc00154_p0042	Elaeis guineensis	HOM04x5M005753	ORTHO04x5M007082	1.8e-54	216.1	361	43.5
p5.00_sc00259_p0012	Elaeis guineensis	HOM04x5M005753	ORTHO04x5M007082	3.0e-54	215.3	361	42.7
TraesCS3D02G314200	Triticum aestivum	HOM04x5M005753	ORTHO04x5M007082	2.6e-53	212.2	364	42.3
TraesCS3B02G349400	Triticum aestivum	HOM04x5M005753	ORTHO04x5M007082	4.4e-53	211.5	364	44.0
TRITD3Bv1G178970	Triticum turgidum	HOM04x5M005753	ORTHO04x5M007082	4.4e-53	211.5	364	44.0
ASH_gene14924	Apostasia shenzhenica	HOM04x5M005753	ORTHO04x5M007082	2.2e-52	209.1	361	42.4
TraesCS3A02G317000	Triticum aestivum	HOM04x5M005753	ORTHO04x5M007082	6.3e-52	207.6	364	44.2
TRITD3Av1G201290	Triticum turgidum	HOM04x5M005753	ORTHO04x5M007082	6.3e-52	207.6	364	44.2
Ma10_g10040	Musa acuminata	HOM04x5M005753	ORTHO04x5M007082	7.0e-51	204.1	360	41.4
Ma08_g03290	Musa acuminata	HOM04x5M005753	ORTHO04x5M007082	1.2e-50	203.4	360	39.7
Potri.004G035500	Populus trichocarpa	HOM04x5M005753	ORTHO04x5M007082	9.5e-48	193.7	361	35.5
GSVIVG01006715001	Vitis vinifera	HOM04x5M005753	ORTHO04x5M007082	1.2e-47	193.4	360	37.8
Solyc02g080270.2	Solanum lycopersicum	HOM04x5M005753	ORTHO04x5M007082	1.6e-47	193.0	361	36.0
CALSI_Maker00015618	Calamus simplicifolius	HOM04x5M005753	ORTHO04x5M007082	6.1e-47	191.0	345	41.4
Potri.011G043800	Populus trichocarpa	HOM04x5M005753	ORTHO04x5M007082	5.2e-46	188.0	361	38.2
Solyc03g031750.1	Solanum lycopersicum	HOM04x5M005753	ORTHO04x5M007082	1.2e-45	186.8	360	35.6
AT4G21560	Arabidopsis thaliana	HOM04x5M005753	ORTHO04x5M007082	5.7e-45	184.5	360	34.7
AT4G05000	Arabidopsis thaliana	HOM04x5M005753	ORTHO04x5M007082	7.5e-45	184.1	360	34.2
Zosma467g00170	Zostera marina	HOM04x5M005753	ORTHO04x5M007082	2.9e-44	182.2	361	35.2
ATR1149G025	Amborella trichopoda	HOM04x5M005753	ORTHO04x5M007082	1.1e-43	180.3	360	34.4
gene13632	Selaginella moellendorffii	HOM04x5M005753	ORTHO04x5M007082	7.8e-42	174.1	358	34.1
gene12907	Selaginella moellendorffii	HOM04x5M005753	ORTHO04x5M007082	7.8e-42	174.1	358	34.1
PAB00012356	Picea abies	HOM04x5M005753	ORTHO04x5M007082	1.3e-41	173.3	359	33.1
Mapoly0186s0005	Marchantia polymorpha	HOM04x5M005753	ORTHO04x5M007082	2.3e-41	172.6	359	33.7
Pp3c17_18750	Physcomitrium patens	HOM04x5M005753	ORTHO04x5M007082	3.3e-40	168.7	359	32.3
CALSI_Maker00002332	Calamus simplicifolius	HOM04x5M005753	ORTHO04x5M007082	2.8e-39	165.6	360	38.1
Pp3c14_20060	Physcomitrium patens	HOM04x5M005753	ORTHO04x5M007082	8.0e-39	164.1	359	31.5
Cre16.g678100	Chlamydomonas reinhardtii	HOM04x5M005753	ORTHO04x5M007082	9.5e-24	114.0	358	26.5
Ma10_g09150	Musa acuminata	HOM04x5M000001	ORTHO04x5M000001	1.2e-18	97.1	87	56.3
Spipo8G0015400	Spirodela polyrhiza	HOM04x5M005753	ORTHO04x5M007082	2.9e-12	75.9	70	58.6
Zjn_sc00019.1.g01060.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M005753	ORTHO04x5M007082	7.8e-10	67.8	37	83.8
PEQU_04978	Phalaenopsis equestris	HOM04x5M005753	ORTHO04x5M007082	1.7e-09	66.6	53	66.0
MCO01G694	Micromonas commoda	HOM04x5M005753	ORTHO04x5M007082	8.7e-09	64.3	75	44.0
Zm00008a034107	Zea mays PH207	HOM04x5M014912	ORTHO04x5M017882	1.3e-07	60.5	30	100.0
Zm00007a00041295	Zea mays B104	HOM04x5M014912	ORTHO04x5M017882	1.8e-06	56.6	30	93.3
Zm00008a017941	Zea mays PH207	HOM04x5M014912	ORTHO04x5M017882	1.8e-06	56.6	30	93.3
Zm00007a00012589	Zea mays B104	HOM04x5M012075	ORTHO04x5M014151	3.1e-06	55.8	42	69.0

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment