Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Pgl_GLEAN_10010908	Cenchrus americanus	HOM04x5M011579	ORTHO04x5M013703	1.3e-167	591.7	306	100.0
Seita.9G270800	Setaria italica	HOM04x5M011579	ORTHO04x5M013703	2.3e-124	448.0	386	69.2
OB01G49780	Oryza brachyantha	HOM04x5M011579	ORTHO04x5M013703	1.3e-26	123.2	381	36.7
LOC_Os01g67890	Oryza sativa ssp. japonica	HOM04x5M011579	ORTHO04x5M013703	2.1e-24	115.9	119	54.6
TraesCS2A02G459200	Triticum aestivum	HOM04x5M011579	ORTHO04x5M013703	1.7e-21	106.3	120	45.0
TRITD2Av1G259110	Triticum turgidum	HOM04x5M011579	ORTHO04x5M013703	1.7e-21	106.3	120	45.0
OB07G14520	Oryza brachyantha	HOM04x5M011579	ORTHO04x5M013703	4.4e-14	81.6	76	57.9
Aco028086	Ananas comosus	HOM04x5M011579	ORTHO04x5M013703	2.1e-11	72.8	125	34.4
LOC_Os01g68560	Oryza sativa ssp. japonica	HOM04x5M008432	ORTHO04x5M011999	5.1e-10	68.2	132	35.6
Bradi2g58503	Brachypodium distachyon	HOM04x5M008432	ORTHO04x5M007487	1.5e-09	66.6	132	34.8
LOC_Os03g38610	Oryza sativa ssp. japonica	HOM04x5M000646	ORTHO04x5M000492	9.5e-09	63.9	124	33.1
Spipo7G0069800	Spirodela polyrhiza	HOM04x5M022897	ORTHO04x5M010418	1.2e-08	63.5	116	32.8
OB01G50150	Oryza brachyantha	HOM04x5M008432	ORTHO04x5M011999	1.6e-08	63.2	119	34.5
Sobic.003G399166	Sorghum bicolor	HOM04x5M010183	ORTHO04x5M011999	1.6e-08	63.2	118	38.1
Potri.001G214900	Populus trichocarpa	HOM04x5M000646	ORTHO04x5M000492	2.1e-08	62.8	111	35.1
Zosma16g00320	Zostera marina	HOM04x5M000646	ORTHO04x5M000492	2.1e-08	62.8	119	31.1
HORVU7Hr1G082640	Hordeum vulgare	HOM04x5M008432	ORTHO04x5M007487	4.7e-08	61.6	120	34.2
Sspon.03G0000550-1A	Saccharum spontaneum	HOM04x5M010183	ORTHO04x5M011999	4.7e-08	61.6	117	36.8
Sspon.03G0000550-2B	Saccharum spontaneum	HOM04x5M010183	ORTHO04x5M011999	4.7e-08	61.6	117	36.8
Zosma37g00440	Zostera marina	HOM04x5M000646	ORTHO04x5M000492	4.7e-08	61.6	122	30.3
Potri.012G109900	Populus trichocarpa	HOM04x5M015845	ORTHO04x5M015379	8.1e-08	60.8	127	29.1
Potri.002G255700	Populus trichocarpa	HOM04x5M015845	ORTHO04x5M015379	8.1e-08	60.8	127	29.1
TraesCS3B02G454700	Triticum aestivum	HOM04x5M008432	ORTHO04x5M022439	8.1e-08	60.8	119	35.3
Zosma3972g00010	Zostera marina	HOM04x5M000646	ORTHO04x5M000492	8.1e-08	60.8	119	30.3
Misin01G197800	Miscanthus sinensis	HOM04x5M010183	ORTHO04x5M011999	1.1e-07	60.5	118	35.6
Misin02G196200	Miscanthus sinensis	HOM04x5M010183	ORTHO04x5M011999	1.1e-07	60.5	118	35.6
TraesCS7A02G367400	Triticum aestivum	HOM04x5M008432	ORTHO04x5M007487	1.1e-07	60.5	131	32.8
Zjn_sc00020.1.g03480.1.sm.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M000646	ORTHO04x5M000492	1.1e-07	60.5	118	32.2
p5.00_sc00060_p0108	Elaeis guineensis	HOM04x5M000646	ORTHO04x5M000492	3.1e-07	58.9	120	31.7
Bradi2g36774	Brachypodium distachyon	HOM04x5M000646	ORTHO04x5M000492	4.0e-07	58.5	129	27.9
Ma02_g20230	Musa acuminata	HOM04x5M000646	ORTHO04x5M000492	5.2e-07	58.2	120	30.8
TraesCS7D02G343400	Triticum aestivum	HOM04x5M008432	ORTHO04x5M007487	5.2e-07	58.2	120	33.3
Aco022101	Ananas comosus	HOM04x5M000646	ORTHO04x5M000492	6.8e-07	57.8	120	31.7
HORVU7Hr1G092850	Hordeum vulgare	HOM04x5M008432	ORTHO04x5M007487	8.9e-07	57.4	122	33.6
Potri.016G068100	Populus trichocarpa	HOM04x5M000646	ORTHO04x5M000492	8.9e-07	57.4	132	31.1
Aco011374	Ananas comosus	HOM04x5M011579	ORTHO04x5M013703	1.2e-06	57.0	92	37.0
Misin05G376400	Miscanthus sinensis	HOM04x5M010183	ORTHO04x5M011999	1.2e-06	57.0	118	35.6
Potri.001G329800	Populus trichocarpa	HOM04x5M015845	ORTHO04x5M015379	1.2e-06	57.0	131	29.0
Potri.006G201700	Populus trichocarpa	HOM04x5M000646	ORTHO04x5M000492	1.2e-06	57.0	132	30.3
Spipo4G0049400	Spirodela polyrhiza	HOM04x5M010499	ORTHO04x5M010418	1.2e-06	57.0	112	32.1
Misin06G364700	Miscanthus sinensis	HOM04x5M010183	ORTHO04x5M011999	1.5e-06	56.6	118	34.7
TraesCS7B02G247300	Triticum aestivum	HOM04x5M008432	ORTHO04x5M007487	1.5e-06	56.6	120	32.5
TRITD7Bv1G140140	Triticum turgidum	HOM04x5M008432	ORTHO04x5M007487	1.5e-06	56.6	120	32.5
Bradi1g15482	Brachypodium distachyon	HOM04x5M000646	ORTHO04x5M000492	2.0e-06	56.2	120	33.3
TraesCS7A02G335700	Triticum aestivum	HOM04x5M008432	ORTHO04x5M007487	2.0e-06	56.2	120	32.5
Bradi1g46675	Brachypodium distachyon	HOM04x5M000646	ORTHO04x5M000492	2.6e-06	55.8	116	30.2
TraesCS7D02G355300	Triticum aestivum	HOM04x5M008432	ORTHO04x5M007487	2.6e-06	55.8	131	31.3
ASH_gene4239	Apostasia shenzhenica	HOM04x5M000646	ORTHO04x5M000492	3.4e-06	55.5	132	30.3
ASH_gene4246	Apostasia shenzhenica	HOM04x5M000646	ORTHO04x5M000492	3.4e-06	55.5	132	30.3
CALSI_Maker00013006	Calamus simplicifolius	HOM04x5M000646	ORTHO04x5M000492	3.4e-06	55.5	120	29.2
Sspon.01G0001320-1A	Saccharum spontaneum	HOM04x5M000034	ORTHO04x5M000013	3.4e-06	55.5	98	36.7
TraesCS7A02G393100	Triticum aestivum	HOM04x5M008432	ORTHO04x5M007487	3.4e-06	55.5	120	32.5
TraesCS7B02G485400	Triticum aestivum	HOM04x5M000646	ORTHO04x5M000492	3.4e-06	55.5	114	30.7
TRITD7Av1G211660	Triticum turgidum	HOM04x5M008432	ORTHO04x5M007487	3.4e-06	55.5	120	32.5
TRITD7Bv1G232510	Triticum turgidum	HOM04x5M000646	ORTHO04x5M000492	3.4e-06	55.5	114	30.7
TraesCS7B02G295200	Triticum aestivum	HOM04x5M008432	ORTHO04x5M007487	5.8e-06	54.7	122	35.2
TraesCS7D02G548500	Triticum aestivum	HOM04x5M000646	ORTHO04x5M000492	5.8e-06	54.7	114	30.7
TRITD7Bv1G163360	Triticum turgidum	HOM04x5M008432	ORTHO04x5M007487	5.8e-06	54.7	122	35.2
ASH_gene10430	Apostasia shenzhenica	HOM04x5M000034	ORTHO04x5M000013	7.6e-06	54.3	94	38.3
AT1G65330	Arabidopsis thaliana	HOM04x5M000646	ORTHO04x5M000492	7.6e-06	54.3	117	28.2
ATR0626G033	Amborella trichopoda	HOM04x5M010499	ORTHO04x5M010418	7.6e-06	54.3	103	28.2
Sobic.010G221500	Sorghum bicolor	HOM04x5M000034	ORTHO04x5M000013	7.6e-06	54.3	122	30.3
Zjn_sc00020.1.g03520.1.sm.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M000646	ORTHO04x5M000492	7.6e-06	54.3	118	29.7
evm.TU.AsparagusV1_07.3400.V1.1	Asparagus officinalis	HOM04x5M000646	ORTHO04x5M000492	9.9e-06	53.9	135	27.4
CALSI_Maker00000320	Calamus simplicifolius	HOM04x5M000646	ORTHO04x5M000492	9.9e-06	53.9	120	29.2
CALSI_Maker00023336	Calamus simplicifolius	HOM04x5M000646	ORTHO04x5M000492	9.9e-06	53.9	127	29.9
CALSI_Maker00023337	Calamus simplicifolius	HOM04x5M000646	ORTHO04x5M000492	9.9e-06	53.9	127	29.9
CALSI_Maker00050163	Calamus simplicifolius	HOM04x5M000646	ORTHO04x5M000492	9.9e-06	53.9	120	29.2
CALSI_Maker00043258	Calamus simplicifolius	HOM04x5M000646	ORTHO04x5M000492	9.9e-06	53.9	127	29.9
Ma11_g16180	Musa acuminata	HOM04x5M000646	ORTHO04x5M000492	9.9e-06	53.9	120	33.3
Ma08_g06010	Musa acuminata	HOM04x5M000646	ORTHO04x5M000492	9.9e-06	53.9	128	29.7
Zm00001d048474	Zea mays B73	HOM04x5M000034	ORTHO04x5M000013	9.9e-06	53.9	125	31.2

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
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