Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Pgl_GLEAN_10000786	Cenchrus americanus	HOM04x5M005886	ORTHO04x5M006873	1.5e-179	631.7	397	100.0
Seita.5G438500	Setaria italica	HOM04x5M005886	ORTHO04x5M006873	3.0e-111	404.8	336	80.1
Sspon.03G0027690-2C	Saccharum spontaneum	HOM04x5M005886	ORTHO04x5M006873	1.8e-84	315.8	334	69.5
Misin06G371200	Miscanthus sinensis	HOM04x5M005886	ORTHO04x5M006873	1.5e-83	312.8	337	69.4
Zm00008a012851	Zea mays PH207	HOM04x5M005886	ORTHO04x5M006873	8.7e-79	297.0	339	65.5
Misin05G403700	Miscanthus sinensis	HOM04x5M005886	ORTHO04x5M006873	2.1e-77	292.4	338	69.2
Sobic.003G412400	Sorghum bicolor	HOM04x5M005886	ORTHO04x5M006873	1.1e-73	280.0	305	67.9
LOC_Os01g70330	Oryza sativa ssp. japonica	HOM04x5M005886	ORTHO04x5M006873	5.1e-71	271.2	339	61.4
OsR498G0102630300.01	Oryza sativa ssp. indica	HOM04x5M005886	ORTHO04x5M006873	5.1e-71	271.2	339	61.4
OB01G51650	Oryza brachyantha	HOM04x5M005886	ORTHO04x5M006873	1.9e-70	269.2	339	63.7
Zm00008a032570	Zea mays PH207	HOM04x5M005886	ORTHO04x5M006873	1.6e-69	266.2	330	64.5
Zm00001d042259	Zea mays B73	HOM04x5M005886	ORTHO04x5M006873	4.9e-66	254.6	339	61.4
Bradi2g59520	Brachypodium distachyon	HOM04x5M005886	ORTHO04x5M006873	1.2e-64	250.0	330	61.2
PH01000002G3260	Phyllostachys edulis	HOM04x5M005886	ORTHO04x5M006873	2.7e-64	248.8	334	60.5
LP007309	Lolium perenne	HOM04x5M005886	ORTHO04x5M006873	1.9e-62	242.7	331	60.4
Zm00001d011945	Zea mays B73	HOM04x5M005886	ORTHO04x5M006873	7.4e-62	240.7	384	55.5
TraesCS3D02G435700	Triticum aestivum	HOM04x5M005886	ORTHO04x5M006873	8.2e-61	237.3	333	58.9
TRITD3Bv1G242330	Triticum turgidum	HOM04x5M005886	ORTHO04x5M006873	1.2e-59	233.4	333	60.1
TraesCS3B02G476800	Triticum aestivum	HOM04x5M005886	ORTHO04x5M006873	4.5e-59	231.5	333	59.8
TraesCS3A02G443200	Triticum aestivum	HOM04x5M005886	ORTHO04x5M006873	1.1e-54	216.9	333	59.2
TRITD3Av1G250510	Triticum turgidum	HOM04x5M005886	ORTHO04x5M006873	1.1e-54	216.9	333	59.2
Sspon.03G0027690-1B	Saccharum spontaneum	HOM04x5M005886	ORTHO04x5M006873	1.8e-52	209.5	284	50.4
Zm00007a00019342	Zea mays B104	HOM04x5M005886	ORTHO04x5M006873	1.9e-41	172.9	260	60.4
Zm00007a00037304	Zea mays B104	HOM04x5M005886	ORTHO04x5M006873	2.5e-41	172.6	278	59.4
Zjn_sc00009.1.g01820.1.sm.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M005886	ORTHO04x5M006873	2.7e-40	169.1	293	42.7
Oropetium_20150105_09848	Oropetium thomaeum	HOM04x5M005886	ORTHO04x5M006873	2.0e-38	162.9	192	58.3
Pgl_GLEAN_10000953	Cenchrus americanus	HOM04x5M005886	ORTHO04x5M006873	7.7e-35	151.0	154	89.6
Ma04_g00080	Musa acuminata	HOM04x5M005886	ORTHO04x5M006873	2.1e-32	142.9	339	45.1
Aco015078	Ananas comosus	HOM04x5M005886	ORTHO04x5M006873	2.3e-31	139.4	341	46.3
CALSI_Maker00037141	Calamus simplicifolius	HOM04x5M005886	ORTHO04x5M006873	3.8e-26	122.1	120	59.2
HORVU3Hr1G096580	Hordeum vulgare	HOM04x5M005886	ORTHO04x5M006873	1.5e-25	120.2	69	89.9
Oropetium_20150105_09847	Oropetium thomaeum	HOM04x5M005886	ORTHO04x5M006873	2.7e-24	115.9	69	89.9
Spipo1G0089600	Spirodela polyrhiza	HOM04x5M005886	ORTHO04x5M006873	4.0e-23	112.1	335	34.0
ATR0763G277	Amborella trichopoda	HOM04x5M005886	ORTHO04x5M006873	3.7e-21	105.5	120	52.5
Potri.017G012500	Populus trichocarpa	HOM04x5M005886	ORTHO04x5M006873	2.4e-20	102.8	109	52.3
Potri.017G011400	Populus trichocarpa	HOM04x5M005886	ORTHO04x5M006873	2.4e-20	102.8	109	52.3
Solyc07g053860.2	Solanum lycopersicum	HOM04x5M005886	ORTHO04x5M006873	3.1e-20	102.4	119	52.1
evm.TU.AsparagusV1_04.1544.V1.1	Asparagus officinalis	HOM04x5M005886	ORTHO04x5M006873	4.1e-20	102.1	132	49.2
GSVIVG01020569001	Vitis vinifera	HOM04x5M005886	ORTHO04x5M006873	7.0e-20	101.3	347	30.3
PEQU_36133	Phalaenopsis equestris	HOM04x5M005886	ORTHO04x5M006873	2.0e-19	99.8	119	50.4
Pgl_GLEAN_10000787	Cenchrus americanus	HOM04x5M005886	ORTHO04x5M006873	5.9e-19	98.2	129	77.5
p5.00_sc00268_p0009	Elaeis guineensis	HOM04x5M005886	ORTHO04x5M006873	5.0e-18	95.1	111	53.2
gene11242	Selaginella moellendorffii	HOM04x5M005886	ORTHO04x5M006873	1.1e-17	94.0	114	47.4
gene20057	Selaginella moellendorffii	HOM04x5M005886	ORTHO04x5M006873	1.1e-17	94.0	114	47.4
Pp3c13_17680	Physcomitrium patens	HOM04x5M005886	ORTHO04x5M006873	1.5e-17	93.6	114	50.0
ASH_gene14434	Apostasia shenzhenica	HOM04x5M005886	ORTHO04x5M006873	1.2e-14	84.0	111	47.7
Zosma2g00470	Zostera marina	HOM04x5M005886	ORTHO04x5M006873	3.1e-12	75.9	110	41.8
Mapoly0076s0049	Marchantia polymorpha	HOM04x5M005886	ORTHO04x5M006873	1.7e-10	70.1	136	35.3
PAB00052105	Picea abies	HOM04x5M005886	ORTHO04x5M006873	2.3e-10	69.7	56	64.3
AT1G03760	Arabidopsis thaliana	HOM04x5M005886	ORTHO04x5M006873	8.0e-08	61.2	116	38.8

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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