Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
PH01000229G0250	Phyllostachys edulis	HOM04x5M005382	ORTHO04x5M006527	0.0e+00	1135.2	599	100.0
Bradi2g58077	Brachypodium distachyon	HOM04x5M005382	ORTHO04x5M006527	2.0e-234	814.7	633	72.8
Sobic.003G394300	Sorghum bicolor	HOM04x5M005382	ORTHO04x5M006527	4.5e-234	813.5	632	69.8
LP034953	Lolium perenne	HOM04x5M005382	ORTHO04x5M006527	1.7e-233	811.6	631	73.1
Misin06G362700	Miscanthus sinensis	HOM04x5M005382	ORTHO04x5M006527	2.2e-233	811.2	630	69.8
Seita.5G420200	Setaria italica	HOM04x5M005382	ORTHO04x5M006527	5.0e-233	810.1	630	73.0
Zm00001d042450	Zea mays B73	HOM04x5M005382	ORTHO04x5M006527	2.8e-228	794.3	628	68.8
Zm00007a00017129	Zea mays B104	HOM04x5M005382	ORTHO04x5M006527	2.8e-228	794.3	628	68.8
Pgl_GLEAN_10010471	Cenchrus americanus	HOM04x5M005382	ORTHO04x5M006527	1.8e-227	791.6	645	69.9
Zm00008a013007	Zea mays PH207	HOM04x5M005382	ORTHO04x5M006527	2.0e-226	788.1	608	70.2
HORVU3Hr1G088460	Hordeum vulgare	HOM04x5M005382	ORTHO04x5M006527	6.1e-215	750.0	632	68.0
TraesCS3A02G390800	Triticum aestivum	HOM04x5M005382	ORTHO04x5M006527	1.4e-214	748.8	634	67.8
TraesCS3D02G383400	Triticum aestivum	HOM04x5M005382	ORTHO04x5M006527	3.0e-214	747.7	636	67.3
HORVU3Hr1G088480	Hordeum vulgare	HOM04x5M005382	ORTHO04x5M006527	1.5e-213	745.3	633	67.9
TraesCS3B02G422600	Triticum aestivum	HOM04x5M005382	ORTHO04x5M006527	2.6e-213	744.6	632	67.2
OsR498G0102541400.01	Oryza sativa ssp. indica	HOM04x5M005382	ORTHO04x5M006527	8.3e-212	739.6	635	68.2
TRITD3Av1G230650	Triticum turgidum	HOM04x5M005382	ORTHO04x5M006527	3.5e-210	734.2	650	65.7
OB01G49790	Oryza brachyantha	HOM04x5M005382	ORTHO04x5M006527	1.0e-209	732.6	635	67.7
TRITD3Bv1G217010	Triticum turgidum	HOM04x5M005382	ORTHO04x5M006527	6.1e-207	723.4	627	66.2
Sspon.03G0028620-2C	Saccharum spontaneum	HOM04x5M005382	ORTHO04x5M006527	6.8e-206	719.9	795	54.2
Aco024203	Ananas comosus	HOM04x5M005382	ORTHO04x5M006527	2.3e-190	668.3	624	58.2
Oropetium_20150105_13135	Oropetium thomaeum	HOM04x5M005382	ORTHO04x5M006527	1.2e-186	656.0	510	69.0
PH01000031G1370	Phyllostachys edulis	HOM04x5M005382	ORTHO04x5M006527	3.3e-184	647.9	612	61.9
LOC_Os01g67920	Oryza sativa ssp. japonica	HOM04x5M005382	ORTHO04x5M006527	2.8e-183	644.8	573	66.8
Misin06G412600	Miscanthus sinensis	HOM04x5M005382	ORTHO04x5M006527	1.2e-178	629.4	496	68.8
Ma08_g08710	Musa acuminata	HOM04x5M005382	ORTHO04x5M006527	9.0e-158	560.1	628	49.0
PEQU_32184	Phalaenopsis equestris	HOM04x5M005382	ORTHO04x5M006527	1.7e-156	555.8	624	48.4
evm.TU.AsparagusV1_04.597.V1.1	Asparagus officinalis	HOM04x5M005382	ORTHO04x5M006527	6.4e-156	553.9	628	49.2
Solyc06g071850.2	Solanum lycopersicum	HOM04x5M005382	ORTHO04x5M006527	5.1e-145	517.7	596	47.8
GSVIVG01007574001	Vitis vinifera	HOM04x5M005382	ORTHO04x5M006527	2.3e-137	492.3	661	44.5
ATR0824G019	Amborella trichopoda	HOM04x5M005382	ORTHO04x5M006527	7.4e-136	487.3	656	43.9
p5.00_sc00130_p0062	Elaeis guineensis	HOM04x5M005382	ORTHO04x5M006527	1.8e-134	482.6	635	45.8
Sspon.03G0028540-1B	Saccharum spontaneum	HOM04x5M000049	ORTHO04x5M006527	1.3e-127	459.9	266	87.2
AT5G63200	Arabidopsis thaliana	HOM04x5M005382	ORTHO04x5M006527	1.1e-123	446.8	602	47.5
CALSI_Maker00005234	Calamus simplicifolius	HOM04x5M005382	ORTHO04x5M006527	1.1e-120	436.8	577	45.6
Zosma79g00200	Zostera marina	HOM04x5M005382	ORTHO04x5M006527	1.0e-113	413.7	566	43.3
Potri.012G092000	Populus trichocarpa	HOM04x5M005382	ORTHO04x5M006527	7.4e-112	407.5	602	41.2
gene5094	Selaginella moellendorffii	HOM04x5M005382	ORTHO04x5M006527	1.7e-100	369.8	607	37.7
gene7444	Selaginella moellendorffii	HOM04x5M005382	ORTHO04x5M006527	1.7e-100	369.8	607	37.7
Mapoly0013s0178	Marchantia polymorpha	HOM04x5M005382	ORTHO04x5M006527	2.3e-97	359.4	607	37.4
Spipo4G0035200	Spirodela polyrhiza	HOM04x5M005382	ORTHO04x5M006527	2.0e-88	329.7	390	46.9
ASH_gene1600	Apostasia shenzhenica	HOM04x5M005382	ORTHO04x5M006527	1.7e-87	326.6	586	37.7
Sspon.03G0000770-2B	Saccharum spontaneum	HOM04x5M004483	ORTHO04x5M005884	1.6e-58	230.3	156	76.3
Spipo4G0035300	Spirodela polyrhiza	HOM04x5M005382	ORTHO04x5M006527	7.3e-43	178.3	197	48.2
Zjn_sc00034.1.g03860.1.sm.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M005382	ORTHO04x5M006527	9.3e-38	161.4	126	64.3
evm.TU.AsparagusV1_05.2410.V1.1	Asparagus officinalis	HOM04x5M005382	ORTHO04x5M006527	3.4e-32	142.9	202	40.6
evm.TU.AsparagusV1_08.1960.V1.1	Asparagus officinalis	HOM04x5M005382	ORTHO04x5M006527	5.8e-32	142.1	202	40.1
Oropetium_20150105_13136	Oropetium thomaeum	HOM04x5M005382	ORTHO04x5M006527	6.5e-31	138.7	80	87.5
PAB00026557	Picea abies	HOM04x5M005382	ORTHO04x5M006527	1.6e-29	134.0	108	60.2
evm.TU.AsparagusV1_08.2080.V1.1	Asparagus officinalis	HOM04x5M005382	ORTHO04x5M006527	1.5e-27	127.5	98	58.2
PAB00064933	Picea abies	HOM04x5M005382	ORTHO04x5M006527	1.5e-24	117.5	144	43.8
PAB00034029	Picea abies	HOM04x5M005382	ORTHO04x5M006527	2.5e-19	100.1	89	55.1
PAB00061745	Picea abies	HOM04x5M005382	ORTHO04x5M006527	6.9e-17	92.0	86	48.8
p5.00_sc00032_p0015	Elaeis guineensis	HOM04x5M005382	ORTHO04x5M006527	2.9e-15	86.7	61	63.9
Sspon.03G0028620-1B	Saccharum spontaneum	HOM04x5M005382	ORTHO04x5M006527	3.8e-15	86.3	49	87.8
p5.00_sc00032_p0014	Elaeis guineensis	HOM04x5M005382	ORTHO04x5M006527	1.0e-12	78.2	83	51.8

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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