Interactive Phylogenetics Module

Gene Id
PH01000002G3240

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Include Gene ID Organism Homologous gene familyOrthologous gene family E-value Bitscore Alignment Length Identity Percentage
PH01000002G3240 Phyllostachys edulis HOM04x5M001523 ORTHO04x5M001589 1.6e-177 625.2 445 100.0
Oropetium_20150105_09846 Oropetium thomaeum HOM04x5M001523 ORTHO04x5M001589 8.5e-91 337.0 441 71.9
LP009590 Lolium perenne HOM04x5M001523 ORTHO04x5M001589 3.0e-88 328.6 236 73.7
OB01G51640 Oryza brachyantha HOM04x5M001523 ORTHO04x5M001589 6.7e-88 327.4 237 74.3
Bradi2g59510 Brachypodium distachyon HOM04x5M001523 ORTHO04x5M001589 8.8e-88 327.0 235 73.6
Sspon.03G0027700-2C Saccharum spontaneum HOM04x5M001523 ORTHO04x5M001589 1.3e-86 323.2 225 75.1
LOC_Os01g70320 Oryza sativa ssp. japonica HOM04x5M001523 ORTHO04x5M001589 1.1e-85 320.1 237 72.2
Seita.5G438400 Setaria italica HOM04x5M001523 ORTHO04x5M001589 1.8e-85 319.3 233 73.0
Sobic.003G412300 Sorghum bicolor HOM04x5M001523 ORTHO04x5M001589 2.4e-85 318.9 236 71.6
Misin05G403900 Miscanthus sinensis HOM04x5M001523 ORTHO04x5M001589 5.3e-85 317.8 236 71.6
Misin06G371400 Miscanthus sinensis HOM04x5M001523 ORTHO04x5M001589 1.6e-84 316.2 236 70.8
HORVU3Hr1G096450 Hordeum vulgare HOM04x5M001523 ORTHO04x5M001589 7.7e-84 313.9 233 71.7
TraesCS3D02G435000 Triticum aestivum HOM04x5M001523 ORTHO04x5M001589 7.7e-84 313.9 233 71.7
TraesCS3B02G476100 Triticum aestivum HOM04x5M001523 ORTHO04x5M001589 1.0e-83 313.5 234 71.4
TraesCS3A02G442300 Triticum aestivum HOM04x5M001523 ORTHO04x5M001589 1.0e-83 313.5 238 70.6
TRITD3Av1G250250 Triticum turgidum HOM04x5M001523 ORTHO04x5M001589 1.0e-83 313.5 238 70.6
TRITD3Bv1G242080 Triticum turgidum HOM04x5M001523 ORTHO04x5M001589 2.9e-83 312.0 238 70.2
Sspon.03G0027700-1P Saccharum spontaneum HOM04x5M001523 ORTHO04x5M001589 5.7e-79 297.7 214 73.4
Aco015077 Ananas comosus HOM04x5M001523 ORTHO04x5M001589 1.3e-75 286.6 231 64.5
CALSI_Maker00016663 Calamus simplicifolius HOM04x5M001523 ORTHO04x5M001589 4.2e-74 281.6 198 70.2
Zm00007a00002495 Zea mays B104 HOM04x5M001523 ORTHO04x5M001589 4.0e-72 275.0 168 82.7
p5.00_sc01766_p0001 Elaeis guineensis HOM04x5M001523 ORTHO04x5M001589 8.8e-72 273.9 237 59.5
Zm00008a012853 Zea mays PH207 HOM04x5M001523 ORTHO04x5M001589 7.5e-71 270.8 445 60.4
Ma04_g00060 Musa acuminata HOM04x5M001523 ORTHO04x5M001589 1.2e-68 263.5 213 62.4
GSVIVG01008631001 Vitis vinifera HOM04x5M001523 ORTHO04x5M001589 6.5e-67 257.7 230 58.7
ATR0582G200 Amborella trichopoda HOM04x5M001523 ORTHO04x5M001589 1.9e-66 256.1 238 56.7
Zjn_sc00009.1.g01850.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM04x5M001523 ORTHO04x5M001589 1.9e-66 256.1 188 70.7
Potri.015G104600 Populus trichocarpa HOM04x5M001523 ORTHO04x5M001589 1.2e-65 253.4 230 57.8
Zjn_sc00034.1.g02320.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM04x5M001523 ORTHO04x5M001589 1.2e-65 253.4 410 41.2
Solyc03g118390.2 Solanum lycopersicum HOM04x5M001523 ORTHO04x5M001589 6.1e-65 251.1 383 41.3
Zosma69g00810 Zostera marina HOM04x5M001523 ORTHO04x5M001589 1.8e-64 249.6 402 54.0
Potri.012G105400 Populus trichocarpa HOM04x5M001523 ORTHO04x5M001589 2.3e-64 249.2 230 57.0
Aco006674 Ananas comosus HOM04x5M001523 ORTHO04x5M001589 5.2e-64 248.1 272 51.8
p5.00_sc00057_p0063 Elaeis guineensis HOM04x5M001523 ORTHO04x5M001589 5.2e-64 248.1 227 57.3
PEQU_07858 Phalaenopsis equestris HOM04x5M001523 ORTHO04x5M001589 6.8e-64 247.7 233 56.2
ASH_gene19761 Apostasia shenzhenica HOM04x5M001523 ORTHO04x5M001589 1.5e-63 246.5 230 56.5
Ma09_g01020 Musa acuminata HOM04x5M001523 ORTHO04x5M001589 3.4e-63 245.4 226 56.6
GSVIVG01004935001 Vitis vinifera HOM04x5M001523 ORTHO04x5M001589 2.8e-62 242.3 231 55.4
Spipo4G0061800 Spirodela polyrhiza HOM04x5M001523 ORTHO04x5M001589 6.3e-62 241.1 230 55.2
Potri.001G065800 Populus trichocarpa HOM04x5M001523 ORTHO04x5M001589 1.1e-61 240.4 228 54.4
Potri.003G164100 Populus trichocarpa HOM04x5M001523 ORTHO04x5M001589 3.1e-61 238.8 230 53.9
PEQU_08641 Phalaenopsis equestris HOM04x5M001523 ORTHO04x5M001589 7.8e-60 234.2 230 53.0
ATR0706G100 Amborella trichopoda HOM04x5M001523 ORTHO04x5M001589 1.0e-59 233.8 228 54.4
Zosma27g00300 Zostera marina HOM04x5M001523 ORTHO04x5M001589 1.0e-59 233.8 230 53.9
CALSI_Maker00037144 Calamus simplicifolius HOM04x5M001523 ORTHO04x5M001589 1.7e-59 233.0 313 44.4
Aco027227 Ananas comosus HOM04x5M001523 ORTHO04x5M001589 5.0e-59 231.5 413 44.3
Zm00001d042262 Zea mays B73 HOM04x5M000360 ORTHO04x5M000256 6.6e-59 231.1 271 51.3
TraesCS4A02G192600 Triticum aestivum HOM04x5M001523 ORTHO04x5M001589 1.6e-57 226.5 451 34.1
TRITD4Av1G154160 Triticum turgidum HOM04x5M001523 ORTHO04x5M001589 1.6e-57 226.5 451 34.1
Seita.8G134100 Setaria italica HOM04x5M001523 ORTHO04x5M001589 2.8e-57 225.7 399 37.8
AT3G48860 Arabidopsis thaliana HOM04x5M001523 ORTHO04x5M001589 3.6e-57 225.3 230 53.0
gene4642 Selaginella moellendorffii HOM04x5M001523 ORTHO04x5M001589 3.6e-57 225.3 226 54.4
gene16812 Selaginella moellendorffii HOM04x5M001523 ORTHO04x5M001589 3.6e-57 225.3 226 54.4
HORVU4Hr1G023390 Hordeum vulgare HOM04x5M001523 ORTHO04x5M001589 4.7e-57 224.9 445 34.4
TraesCS4D02G120700 Triticum aestivum HOM04x5M001523 ORTHO04x5M001589 1.4e-56 223.4 452 33.6
TraesCS4B02G122700 Triticum aestivum HOM04x5M001523 ORTHO04x5M001589 2.3e-56 222.6 452 33.4
TRITD4Bv1G050480 Triticum turgidum HOM04x5M001523 ORTHO04x5M001589 2.3e-56 222.6 452 33.4
Pgl_GLEAN_10000952 Cenchrus americanus HOM04x5M001523 ORTHO04x5M001589 3.0e-56 222.2 133 84.2
Bradi4g17917 Brachypodium distachyon HOM04x5M001523 ORTHO04x5M001589 5.2e-56 221.5 454 33.7
LOC_Os11g31950 Oryza sativa ssp. japonica HOM04x5M001523 ORTHO04x5M001589 2.0e-55 219.5 397 36.3
AT5G23700 Arabidopsis thaliana HOM04x5M001523 ORTHO04x5M001589 2.6e-55 219.2 223 53.8
Zm00007a00011305 Zea mays B104 HOM04x5M001523 ORTHO04x5M001589 3.4e-55 218.8 483 36.9
OB11G21770 Oryza brachyantha HOM04x5M001523 ORTHO04x5M001589 9.8e-55 217.2 400 35.8
Oropetium_20150105_21536 Oropetium thomaeum HOM04x5M001523 ORTHO04x5M001589 9.8e-55 217.2 399 36.6
Sspon.06G0014630-4D Saccharum spontaneum HOM04x5M001523 ORTHO04x5M001589 1.3e-54 216.9 211 53.6
LP038183 Lolium perenne HOM04x5M001523 ORTHO04x5M001589 1.7e-54 216.5 392 37.5
Sobic.005G129400 Sorghum bicolor HOM04x5M001523 ORTHO04x5M001589 2.9e-54 215.7 395 37.0
Sspon.06G0014630-1A Saccharum spontaneum HOM04x5M001523 ORTHO04x5M001589 3.7e-54 215.3 228 51.3
Sspon.06G0014630-3C Saccharum spontaneum HOM04x5M001523 ORTHO04x5M001589 3.7e-54 215.3 228 51.3
Misin09G134700 Miscanthus sinensis HOM04x5M001523 ORTHO04x5M001589 4.9e-54 214.9 391 36.6
AT4G25070 Arabidopsis thaliana HOM04x5M001523 ORTHO04x5M001589 6.4e-54 214.5 223 50.7
Misin10G109400 Miscanthus sinensis HOM04x5M001523 ORTHO04x5M001589 1.8e-53 213.0 410 35.9
CALSI_Maker00018832 Calamus simplicifolius HOM04x5M001523 ORTHO04x5M001589 2.4e-53 212.6 278 45.3
Pp3c19_9680 Physcomitrium patens HOM04x5M001523 ORTHO04x5M001589 5.4e-53 211.5 229 51.1
Pgl_GLEAN_10004734 Cenchrus americanus HOM04x5M001523 ORTHO04x5M001589 9.2e-53 210.7 399 36.6
Zm00001d049273 Zea mays B73 HOM04x5M001523 ORTHO04x5M001589 9.2e-53 210.7 497 36.0
Aco007293 Ananas comosus HOM04x5M001523 ORTHO04x5M001589 2.0e-52 209.5 234 49.6
Potri.005G044600 Populus trichocarpa HOM04x5M001523 ORTHO04x5M001589 2.0e-52 209.5 231 47.2
Mapoly0101s0059 Marchantia polymorpha HOM04x5M001523 ORTHO04x5M001589 3.5e-52 208.8 214 50.9
AT5G13260 Arabidopsis thaliana HOM04x5M001523 ORTHO04x5M001589 3.0e-51 205.7 224 49.1
Ma02_g03510 Musa acuminata HOM04x5M001523 ORTHO04x5M001589 5.6e-50 201.4 216 49.1
Pgl_GLEAN_10000785 Cenchrus americanus HOM04x5M001523 ORTHO04x5M001589 9.5e-50 200.7 159 67.3
evm.TU.AsparagusV1_02.2052.V1.1 Asparagus officinalis HOM04x5M001523 ORTHO04x5M001589 1.2e-49 200.3 233 48.5
Pp3c22_21290 Physcomitrium patens HOM04x5M001523 ORTHO04x5M001589 1.6e-49 199.9 227 48.0
Pp3c22_21255 Physcomitrium patens HOM04x5M001523 ORTHO04x5M001589 1.6e-49 199.9 227 48.0
Spipo7G0049800 Spirodela polyrhiza HOM04x5M001523 ORTHO04x5M001589 1.8e-48 196.4 217 49.8
LP007813 Lolium perenne HOM04x5M001523 ORTHO04x5M001589 2.3e-48 196.1 212 50.9
TraesCS1A02G102200 Triticum aestivum HOM04x5M001523 ORTHO04x5M001589 4.0e-48 195.3 212 50.0
TRITD1Av1G041990 Triticum turgidum HOM04x5M001523 ORTHO04x5M001589 4.0e-48 195.3 212 50.0
Sspon.06G0014630-2B Saccharum spontaneum HOM04x5M001523 ORTHO04x5M001589 1.5e-47 193.4 446 36.5
AT4G08630 Arabidopsis thaliana HOM04x5M001523 ORTHO04x5M001589 2.0e-47 193.0 230 44.3
Bradi2g36005 Brachypodium distachyon HOM04x5M001523 ORTHO04x5M001589 4.4e-47 191.8 474 31.6
TraesCS1D02G093800 Triticum aestivum HOM04x5M001523 ORTHO04x5M001589 9.8e-47 190.7 211 50.2
TraesCS1B02G112600 Triticum aestivum HOM04x5M001523 ORTHO04x5M001589 1.3e-46 190.3 211 49.8
TRITD1Bv1G044830 Triticum turgidum HOM04x5M001523 ORTHO04x5M001589 1.3e-46 190.3 211 49.8
Pp3c19_10380 Physcomitrium patens HOM04x5M001523 ORTHO04x5M001589 3.7e-46 188.7 383 35.2
Sspon.07G0013220-2B Saccharum spontaneum HOM04x5M001523 ORTHO04x5M001589 8.3e-46 187.6 225 45.8
Misin17G049700 Miscanthus sinensis HOM04x5M001523 ORTHO04x5M001589 1.4e-45 186.8 225 45.8
Oropetium_20150105_15532 Oropetium thomaeum HOM04x5M001523 ORTHO04x5M001589 1.4e-45 186.8 472 32.8
Sspon.07G0013220-1T Saccharum spontaneum HOM04x5M001523 ORTHO04x5M001589 3.2e-45 185.7 230 44.8
Misin16G054100 Miscanthus sinensis HOM04x5M001523 ORTHO04x5M001589 1.2e-44 183.7 230 44.8
Seita.3G038900 Setaria italica HOM04x5M001523 ORTHO04x5M001589 1.2e-44 183.7 224 46.0
Sobic.009G042800 Sorghum bicolor HOM04x5M001523 ORTHO04x5M001589 3.5e-44 182.2 217 47.0
LOC_Os05g05580 Oryza sativa ssp. japonica HOM04x5M001523 ORTHO04x5M001589 6.0e-44 181.4 236 44.9
GSVIVG01021962001 Vitis vinifera HOM04x5M001523 ORTHO04x5M001589 6.0e-44 181.4 138 65.2
Sspon.07G0013220-1A Saccharum spontaneum HOM04x5M001523 ORTHO04x5M001589 7.3e-42 174.5 230 43.5
Zm00007a00006561 Zea mays B104 HOM04x5M001523 ORTHO04x5M001589 2.8e-41 172.6 220 44.1
Zm00008a037492 Zea mays PH207 HOM04x5M001523 ORTHO04x5M001589 1.7e-38 163.3 218 43.1
CALSI_Maker00048189 Calamus simplicifolius HOM04x5M001523 ORTHO04x5M001589 1.1e-37 160.6 183 48.1
Mapoly0013s0021 Marchantia polymorpha HOM04x5M001523 ORTHO04x5M001589 1.3e-35 153.7 213 40.4
evm.TU.AsparagusV1_09.1475.V1.1 Asparagus officinalis HOM04x5M001523 ORTHO04x5M001589 2.1e-33 146.4 117 59.0
OB05G13160 Oryza brachyantha HOM04x5M001523 ORTHO04x5M001589 2.0e-31 139.8 244 38.5
Zosma5g01040 Zostera marina HOM04x5M001523 ORTHO04x5M001589 2.0e-31 139.8 216 39.4
Zjn_sc00186.1.g00130.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM04x5M001523 ORTHO04x5M001589 9.9e-31 137.5 171 45.6
PH01002160G0270 Phyllostachys edulis HOM04x5M001523 ORTHO04x5M001589 2.9e-30 136.0 69 97.1
PH01002160G0250 Phyllostachys edulis HOM04x5M001523 ORTHO04x5M001589 3.0e-27 125.9 58 96.6
PAB00042674 Picea abies HOM04x5M001523 ORTHO04x5M001589 1.8e-24 116.7 133 47.4
OsR498G1120235900.01 Oryza sativa ssp. indica HOM04x5M001523 ORTHO04x5M001589 1.7e-22 110.2 319 28.5
evm.TU.AsparagusV1_04.1549.V1.1 Asparagus officinalis HOM04x5M001523 ORTHO04x5M001589 3.6e-17 92.4 134 41.0
Solyc10g037930.1 Solanum lycopersicum HOM04x5M001523 ORTHO04x5M001589 2.6e-15 86.3 146 35.6
Aco021763 Ananas comosus HOM04x5M001523 ORTHO04x5M009652 1.3e-14 84.0 70 58.6
p5.00_sc00211_p0001 Elaeis guineensis HOM04x5M001523 ORTHO04x5M001589 4.9e-14 82.0 123 39.8
PAB00048619 Picea abies HOM04x5M001523 ORTHO04x5M001589 6.4e-14 81.6 97 49.5
PAB00006093 Picea abies HOM04x5M001523 ORTHO04x5M001589 1.4e-13 80.5 60 60.0
MCO12G428 Micromonas commoda HOM04x5M001523 ORTHO04x5M001589 2.1e-12 76.6 138 34.1
Aco028088 Ananas comosus HOM04x5M000382 ORTHO04x5M000270 7.9e-12 74.7 43 72.1
OsR498G0509736400.01 Oryza sativa ssp. indica HOM04x5M001523 ORTHO04x5M001589 3.9e-11 72.4 109 42.2
PH01083440G0010 Phyllostachys edulis HOM04x5M001523 ORTHO04x5M001589 3.7e-09 65.9 59 54.2
OsR498G0102629600.01 Oryza sativa ssp. indica HOM04x5M001523 ORTHO04x5M001589 8.1e-09 64.7 30 90.0
PEQU_04259 Phalaenopsis equestris HOM04x5M001523 ORTHO04x5M001589 2.4e-08 63.2 108 40.7
Pgl_GLEAN_10003497 Cenchrus americanus HOM04x5M001523 ORTHO04x5M001589 3.1e-08 62.8 107 39.3
ASH_gene8570 Apostasia shenzhenica HOM04x5M001523 ORTHO04x5M001589 1.2e-07 60.8 62 51.6
evm.TU.AsparagusV1_Unassigned.393.V1.1 Asparagus officinalis HOM04x5M001523 ORTHO04x5M001589 1.5e-07 60.5 29 89.7
CALSI_Maker00048187 Calamus simplicifolius HOM04x5M001523 ORTHO04x5M016727 2.0e-07 60.1 46 69.6
GSVIVG01021966001 Vitis vinifera HOM04x5M001523 ORTHO04x5M016727 2.0e-07 60.1 37 86.5
Solyc05g023770.2 Solanum lycopersicum HOM04x5M001523 ORTHO04x5M001589 3.4e-07 59.3 29 82.8
GSVIVG01021965001 Vitis vinifera HOM04x5M001523 ORTHO04x5M001589 5.8e-07 58.5 30 83.3

Amborella trichopoda (2 genes)
Ananas comosus (6 genes)
Apostasia shenzhenica (2 genes)
Arabidopsis thaliana (5 genes)
Asparagus officinalis (4 genes)
Brachypodium distachyon (3 genes)
Calamus simplicifolius (5 genes)
Cenchrus americanus (4 genes)
Chlamydomonas reinhardtii (0 genes)
Elaeis guineensis (3 genes)
Hordeum vulgare (2 genes)
Lolium perenne (3 genes)
Marchantia polymorpha (2 genes)
Micromonas commoda (1 genes)
Miscanthus sinensis (6 genes)
Musa acuminata (3 genes)
Oropetium thomaeum (3 genes)
Oryza brachyantha (3 genes)
Oryza sativa ssp. indica (3 genes)
Oryza sativa ssp. japonica (3 genes)
Phalaenopsis equestris (3 genes)
Phyllostachys edulis (4 genes)
Physcomitrium patens (4 genes)
Picea abies (3 genes)
Populus trichocarpa (5 genes)
Saccharum spontaneum (9 genes)
Selaginella moellendorffii (2 genes)
Setaria italica (3 genes)
Solanum lycopersicum (3 genes)
Sorghum bicolor (3 genes)
Spirodela polyrhiza (2 genes)
Triticum aestivum (9 genes)
Triticum turgidum (6 genes)
Vitis vinifera (5 genes)
Zea mays B73 (2 genes)
Zea mays B104 (3 genes)
Zea mays PH207 (2 genes)
Zostera marina (3 genes)
Zoysia japonica ssp. nagirizaki (3 genes)

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