Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
PAB00044103	Picea abies	HOM04x5M004993	ORTHO04x5M007440	1.9e-69	264.6	158	100.0
AT3G20780	Arabidopsis thaliana	HOM04x5M004993	ORTHO04x5M007440	5.6e-21	103.6	55	89.1
Potri.003G211000	Populus trichocarpa	HOM04x5M004993	ORTHO04x5M007440	5.6e-21	103.6	55	87.3
evm.TU.AsparagusV1_01.217.V1.1	Asparagus officinalis	HOM04x5M004993	ORTHO04x5M007440	4.7e-20	100.5	54	90.7
HORVU5Hr1G053310	Hordeum vulgare	HOM04x5M004993	ORTHO04x5M007440	6.2e-20	100.1	54	88.9
Mapoly0042s0060	Marchantia polymorpha	HOM04x5M004993	ORTHO04x5M007440	6.2e-20	100.1	54	85.2
TraesCS5A02G173900	Triticum aestivum	HOM04x5M004993	ORTHO04x5M007440	6.2e-20	100.1	54	88.9
TraesCS5B02G171400	Triticum aestivum	HOM04x5M004993	ORTHO04x5M007440	6.2e-20	100.1	54	88.9
TRITD5Av1G127580	Triticum turgidum	HOM04x5M004993	ORTHO04x5M007440	6.2e-20	100.1	54	88.9
TRITD5Bv1G107070	Triticum turgidum	HOM04x5M004993	ORTHO04x5M007440	6.2e-20	100.1	54	88.9
GSVIVG01025336001	Vitis vinifera	HOM04x5M004993	ORTHO04x5M007440	6.2e-20	100.1	54	87.0
Aco017116	Ananas comosus	HOM04x5M004993	ORTHO04x5M007440	8.1e-20	99.8	54	87.0
gene10704	Selaginella moellendorffii	HOM04x5M004993	ORTHO04x5M007440	8.1e-20	99.8	54	85.2
gene23251	Selaginella moellendorffii	HOM04x5M004993	ORTHO04x5M007440	8.1e-20	99.8	54	85.2
TraesCS5D02G178400	Triticum aestivum	HOM04x5M004993	ORTHO04x5M007440	8.1e-20	99.8	54	87.0
Zosma418g00070	Zostera marina	HOM04x5M004993	ORTHO04x5M007440	1.1e-19	99.4	55	85.5
LP024950	Lolium perenne	HOM04x5M004993	ORTHO04x5M007440	1.4e-19	99.0	54	87.0
Spipo5G0015900	Spirodela polyrhiza	HOM04x5M004993	ORTHO04x5M007440	1.4e-19	99.0	54	87.0
Bradi4g27057	Brachypodium distachyon	HOM04x5M004993	ORTHO04x5M007440	1.8e-19	98.6	54	85.2
Pgl_GLEAN_10009201	Cenchrus americanus	HOM04x5M004993	ORTHO04x5M007440	1.8e-19	98.6	54	85.2
Misin04G142500	Miscanthus sinensis	HOM04x5M004993	ORTHO04x5M007440	1.8e-19	98.6	54	85.2
PH01004131G0010	Phyllostachys edulis	HOM04x5M004993	ORTHO04x5M007440	1.8e-19	98.6	54	85.2
Sobic.002G152900	Sorghum bicolor	HOM04x5M004993	ORTHO04x5M007440	1.8e-19	98.6	54	85.2
Seita.2G163500	Setaria italica	HOM04x5M004993	ORTHO04x5M007440	1.8e-19	98.6	54	85.2
Zjn_sc00035.1.g00590.1.sm.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M004993	ORTHO04x5M007440	1.8e-19	98.6	54	85.2
Zm00001d019950	Zea mays B73	HOM04x5M004993	ORTHO04x5M007440	1.8e-19	98.6	54	85.2
Zm00008a027627	Zea mays PH207	HOM04x5M004993	ORTHO04x5M007440	1.8e-19	98.6	54	85.2
p5.00_sc00020_p0166	Elaeis guineensis	HOM04x5M004993	ORTHO04x5M007440	2.4e-19	98.2	54	85.2
LOC_Os09g10770	Oryza sativa ssp. japonica	HOM04x5M004993	ORTHO04x5M007440	2.4e-19	98.2	54	85.2
OsR498G0916907100.01	Oryza sativa ssp. indica	HOM04x5M004993	ORTHO04x5M007440	2.4e-19	98.2	54	85.2
PEQU_01216	Phalaenopsis equestris	HOM04x5M004993	ORTHO04x5M007440	2.4e-19	98.2	54	87.0
Ma01_g00040	Musa acuminata	HOM04x5M004993	ORTHO04x5M007440	3.1e-19	97.8	54	83.3
OB09G12250	Oryza brachyantha	HOM04x5M004993	ORTHO04x5M007440	3.1e-19	97.8	54	83.3
Solyc01g014490.2	Solanum lycopersicum	HOM04x5M004993	ORTHO04x5M007440	3.1e-19	97.8	55	85.5
Oropetium_20150105_25268	Oropetium thomaeum	HOM04x5M004993	ORTHO04x5M007440	4.0e-19	97.4	54	83.3
MisinT396000	Miscanthus sinensis	HOM04x5M004993	ORTHO04x5M007440	5.3e-19	97.1	54	83.3
Misin03G039400	Miscanthus sinensis	HOM04x5M004993	ORTHO04x5M007440	1.2e-18	95.9	54	81.5
Sspon.07G0009390-3C	Saccharum spontaneum	HOM04x5M000049	ORTHO04x5M000028	1.2e-18	95.9	54	81.5
Pp3c22_12720	Physcomitrium patens	HOM04x5M004993	ORTHO04x5M007440	1.5e-18	95.5	54	81.5
ATR0605G091	Amborella trichopoda	HOM04x5M004993	ORTHO04x5M007440	4.4e-18	94.0	55	80.0
Zm00007a00012939	Zea mays B104	HOM04x5M004993	ORTHO04x5M007440	1.1e-16	89.4	48	85.4
Cre01.g019750	Chlamydomonas reinhardtii	HOM04x5M004993	ORTHO04x5M007440	1.9e-16	88.6	52	78.8
MCO09G243	Micromonas commoda	HOM04x5M004993	ORTHO04x5M007440	3.9e-14	80.9	52	78.8
PAB00021954	Picea abies	HOM04x5M021994	ORTHO04x5M021910	2.1e-12	75.1	65	49.2
CALSI_Maker00003273	Calamus simplicifolius	HOM04x5M004993	ORTHO04x5M007440	1.4e-11	72.4	37	91.9
PAB00050141	Picea abies	HOM04x5M002578	ORTHO04x5M002852	3.5e-07	57.8	55	45.5
PAB00007988	Picea abies	HOM04x5M003096	ORTHO04x5M152245	3.9e-06	54.3	48	41.7

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment