Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
PAB00038035	Picea abies	HOM04x5M004483	ORTHO04x5M021890	3.9e-97	357.1	219	100.0
GSVIVG01016094001	Vitis vinifera	HOM04x5M004483	ORTHO04x5M005884	1.0e-28	129.8	154	51.9
Ma09_g26670	Musa acuminata	HOM04x5M004483	ORTHO04x5M005884	2.9e-28	128.3	146	54.8
Ma06_g32990	Musa acuminata	HOM04x5M004483	ORTHO04x5M005884	1.1e-27	126.3	146	51.4
PEQU_14397	Phalaenopsis equestris	HOM04x5M004483	ORTHO04x5M021890	1.1e-27	126.3	141	54.6
evm.TU.AsparagusV1_07.3477.V1.1	Asparagus officinalis	HOM04x5M004483	ORTHO04x5M005884	1.5e-27	125.9	146	54.1
ATR1098G037	Amborella trichopoda	HOM04x5M004483	ORTHO04x5M005884	1.9e-27	125.6	159	52.2
CALSI_Maker00040564	Calamus simplicifolius	HOM04x5M004483	ORTHO04x5M005884	1.9e-27	125.6	146	54.1
p5.00_sc00079_p0034	Elaeis guineensis	HOM04x5M004483	ORTHO04x5M005884	2.5e-27	125.2	146	54.1
ASH_gene16649	Apostasia shenzhenica	HOM04x5M004483	ORTHO04x5M005884	1.6e-26	122.5	157	51.0
Aco018477	Ananas comosus	HOM04x5M004483	ORTHO04x5M005884	2.8e-26	121.7	159	49.7
Solyc04g049490.2	Solanum lycopersicum	HOM04x5M004483	ORTHO04x5M005884	4.7e-26	120.9	155	49.0
Pp3c8_8190	Physcomitrium patens	HOM04x5M004483	ORTHO04x5M005884	6.1e-26	120.6	152	47.4
gene23001	Selaginella moellendorffii	HOM04x5M004483	ORTHO04x5M005884	1.8e-25	119.0	146	52.1
gene24646	Selaginella moellendorffii	HOM04x5M004483	ORTHO04x5M005884	1.8e-25	119.0	146	52.1
Potri.016G023000	Populus trichocarpa	HOM04x5M004483	ORTHO04x5M005884	5.2e-25	117.5	153	46.4
Oropetium_20150105_13133	Oropetium thomaeum	HOM04x5M004483	ORTHO04x5M005884	1.5e-24	115.9	155	47.7
Spipo16G0007900	Spirodela polyrhiza	HOM04x5M004483	ORTHO04x5M005884	1.5e-24	115.9	158	46.8
Mapoly0030s0152	Marchantia polymorpha	HOM04x5M004483	ORTHO04x5M005884	2.0e-24	115.5	159	45.9
Seita.5G420100	Setaria italica	HOM04x5M004483	ORTHO04x5M005884	7.5e-24	113.6	155	47.1
Pp3c24_4920	Physcomitrium patens	HOM04x5M004483	ORTHO04x5M005884	9.8e-24	113.2	155	47.1
Pgl_GLEAN_10010470	Cenchrus americanus	HOM04x5M004483	ORTHO04x5M005884	1.3e-23	112.8	144	49.3
OB01G49770	Oryza brachyantha	HOM04x5M004483	ORTHO04x5M005884	1.3e-23	112.8	146	49.3
Zm00001d042451	Zea mays B73	HOM04x5M004483	ORTHO04x5M005884	1.7e-23	112.5	152	61.2
Zm00007a00032775	Zea mays B104	HOM04x5M004483	ORTHO04x5M005884	1.7e-23	112.5	152	61.2
Zm00008a013008	Zea mays PH207	HOM04x5M004483	ORTHO04x5M005884	1.7e-23	112.5	152	61.2
Misin06G412700	Miscanthus sinensis	HOM04x5M004483	ORTHO04x5M005884	2.2e-23	112.1	155	46.5
Misin06G362600	Miscanthus sinensis	HOM04x5M004483	ORTHO04x5M005884	2.9e-23	111.7	155	45.8
Sspon.03G0000770-1A	Saccharum spontaneum	HOM04x5M004483	ORTHO04x5M005884	2.9e-23	111.7	155	45.8
Sspon.03G0000770-3C	Saccharum spontaneum	HOM04x5M004483	ORTHO04x5M005884	2.9e-23	111.7	155	45.8
Sobic.003G394200	Sorghum bicolor	HOM04x5M004483	ORTHO04x5M005884	3.7e-23	111.3	155	46.5
Sspon.03G0000770-4D	Saccharum spontaneum	HOM04x5M004483	ORTHO04x5M005884	3.7e-23	111.3	155	45.8
TraesCS3B02G422700	Triticum aestivum	HOM04x5M004483	ORTHO04x5M005884	3.7e-23	111.3	155	45.8
TraesCS3A02G390900	Triticum aestivum	HOM04x5M004483	ORTHO04x5M005884	3.7e-23	111.3	155	45.8
TRITD3Av1G230670	Triticum turgidum	HOM04x5M004483	ORTHO04x5M005884	3.7e-23	111.3	155	45.8
OsR498G0102540800.01	Oryza sativa ssp. indica	HOM04x5M004483	ORTHO04x5M005884	4.9e-23	110.9	144	47.9
HORVU3Hr1G088490	Hordeum vulgare	HOM04x5M004483	ORTHO04x5M005884	6.4e-23	110.5	155	45.8
PH01000229G0300	Phyllostachys edulis	HOM04x5M004483	ORTHO04x5M005884	8.3e-23	110.2	144	47.2
LP034954	Lolium perenne	HOM04x5M004483	ORTHO04x5M005884	1.1e-22	109.8	155	45.2
TraesCS3D02G383500	Triticum aestivum	HOM04x5M004483	ORTHO04x5M005884	1.1e-22	109.8	155	45.8
AT1G50500	Arabidopsis thaliana	HOM04x5M004483	ORTHO04x5M005884	1.9e-22	109.0	161	41.6
Sspon.03G0000770-2B	Saccharum spontaneum	HOM04x5M004483	ORTHO04x5M005884	2.4e-22	108.6	133	49.6
Bradi2g58070	Brachypodium distachyon	HOM04x5M004483	ORTHO04x5M005884	4.1e-22	107.8	155	45.2
Zosma30g00970	Zostera marina	HOM04x5M004483	ORTHO04x5M005884	5.4e-22	107.5	146	48.6
TRITD3Bv1G217030	Triticum turgidum	HOM04x5M004483	ORTHO04x5M005884	2.7e-21	105.1	149	45.0
PH01000031G1260	Phyllostachys edulis	HOM04x5M004483	ORTHO04x5M005884	2.3e-20	102.1	149	44.3
HORVU3Hr1G088450	Hordeum vulgare	HOM04x5M004483	ORTHO04x5M005884	6.6e-20	100.5	157	42.0
Sspon.03G0045090-1D	Saccharum spontaneum	HOM04x5M004483	ORTHO04x5M005884	1.4e-17	92.8	192	37.0
Zm00001d045865	Zea mays B73	HOM04x5M004483	ORTHO04x5M021890	4.7e-10	67.8	111	63.1

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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