Monocots PLAZA 4.5 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Ma11_g22440	Musa acuminata	HOM04x5M005027	ORTHO04x5M006357	2.0e-268	927.2	468	100.0
Ma05_g31300	Musa acuminata	HOM04x5M005027	ORTHO04x5M006357	8.6e-227	788.9	472	85.0
Ma10_g05760	Musa acuminata	HOM04x5M005027	ORTHO04x5M006357	3.9e-203	710.3	451	80.3
p5.00_sc00084_p0029	Elaeis guineensis	HOM04x5M005027	ORTHO04x5M006357	3.9e-179	630.6	465	70.5
Aco014103	Ananas comosus	HOM04x5M005027	ORTHO04x5M006357	1.0e-171	605.9	481	64.7
ASH_gene15536	Apostasia shenzhenica	HOM04x5M005027	ORTHO04x5M006357	3.2e-165	584.3	459	65.6
Seita.5G387000	Setaria italica	HOM04x5M005027	ORTHO04x5M006357	1.9e-162	575.1	461	62.5
LOC_Os01g63690	Oryza sativa ssp. japonica	HOM04x5M005027	ORTHO04x5M006357	1.1e-160	569.3	442	64.5
OsR498G0102361800.01	Oryza sativa ssp. indica	HOM04x5M005027	ORTHO04x5M006357	1.4e-160	568.9	438	64.6
Zjn_sc00040.1.g05820.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M005027	ORTHO04x5M006357	9.0e-160	566.2	456	61.8
OB01G46470	Oryza brachyantha	HOM04x5M005027	ORTHO04x5M006357	1.5e-159	565.5	477	61.0
Misin05G333200	Miscanthus sinensis	HOM04x5M005027	ORTHO04x5M006357	1.3e-158	562.4	467	60.8
TraesCS3D02G361800	Triticum aestivum	HOM04x5M005027	ORTHO04x5M006357	1.3e-158	562.4	461	61.2
Sobic.003G361100	Sorghum bicolor	HOM04x5M005027	ORTHO04x5M006357	2.2e-158	561.6	457	61.5
TraesCS3A02G368800	Triticum aestivum	HOM04x5M005027	ORTHO04x5M006357	3.8e-158	560.8	454	62.1
HORVU3Hr1G084830	Hordeum vulgare	HOM04x5M005027	ORTHO04x5M006357	1.4e-157	558.9	454	61.9
Spipo23G0003600	Spirodela polyrhiza	HOM04x5M005027	ORTHO04x5M006357	1.9e-157	558.5	473	61.5
Misin06G331100	Miscanthus sinensis	HOM04x5M005027	ORTHO04x5M006357	2.5e-157	558.1	421	63.9
Oropetium_20150105_12835	Oropetium thomaeum	HOM04x5M005027	ORTHO04x5M006357	2.5e-157	558.1	456	61.6
Bradi2g55310	Brachypodium distachyon	HOM04x5M005027	ORTHO04x5M006357	5.5e-157	557.0	468	61.1
Sspon.03G0002320-3C	Saccharum spontaneum	HOM04x5M005027	ORTHO04x5M006357	5.5e-157	557.0	428	63.3
Sspon.03G0002320-1A	Saccharum spontaneum	HOM04x5M005027	ORTHO04x5M006357	1.6e-156	555.4	428	63.3
TraesCS3B02G400800	Triticum aestivum	HOM04x5M005027	ORTHO04x5M006357	1.8e-155	552.0	454	60.8
Zm00007a00044283	Zea mays B104	HOM04x5M005027	ORTHO04x5M006357	1.8e-155	552.0	465	59.6
Zm00001d042811	Zea mays B73	HOM04x5M005027	ORTHO04x5M006357	2.0e-154	548.5	465	59.6
PH01000004G3370	Phyllostachys edulis	HOM04x5M005027	ORTHO04x5M006357	7.4e-154	546.6	465	58.9
Zjn_sc00009.1.g06110.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M005027	ORTHO04x5M006357	9.7e-154	546.2	430	63.3
Zm00001d012321	Zea mays B73	HOM04x5M005027	ORTHO04x5M006357	9.1e-152	539.7	424	63.0
Zm00007a00042548	Zea mays B104	HOM04x5M005027	ORTHO04x5M006357	9.1e-152	539.7	424	63.0
TRITD3Av1G221930	Triticum turgidum	HOM04x5M005027	ORTHO04x5M006357	2.0e-143	511.9	428	60.5
Potri.010G191300	Populus trichocarpa	HOM04x5M005027	ORTHO04x5M006357	1.5e-141	505.8	438	58.2
TRITD3Bv1G207870	Triticum turgidum	HOM04x5M005027	ORTHO04x5M006357	5.5e-141	503.8	428	59.1
LP031349	Lolium perenne	HOM04x5M005027	ORTHO04x5M006357	4.8e-137	490.7	455	56.0
ATR0618G085	Amborella trichopoda	HOM04x5M005027	ORTHO04x5M006357	1.6e-135	485.7	438	57.3
GSVIVG01032858001	Vitis vinifera	HOM04x5M005027	ORTHO04x5M006357	3.5e-135	484.6	412	58.3
Potri.008G066000	Populus trichocarpa	HOM04x5M005027	ORTHO04x5M006357	1.8e-128	462.2	442	53.6
AT2G40000	Arabidopsis thaliana	HOM04x5M005027	ORTHO04x5M006357	1.4e-115	419.5	434	50.0
Zosma172g00440	Zostera marina	HOM04x5M005027	ORTHO04x5M006357	8.9e-115	416.8	459	50.8
AT3G55840	Arabidopsis thaliana	HOM04x5M005027	ORTHO04x5M006357	3.9e-110	401.4	434	49.3
Pp3c2_27180	Physcomitrium patens	HOM04x5M005027	ORTHO04x5M006357	1.2e-106	389.8	435	47.6
Pgl_GLEAN_10020167	Cenchrus americanus	HOM04x5M005027	ORTHO04x5M006357	1.7e-105	386.0	459	47.5
Pp3c1_9290	Physcomitrium patens	HOM04x5M005027	ORTHO04x5M006357	4.6e-103	377.9	436	46.6
Zm00008a032853	Zea mays PH207	HOM04x5M005027	ORTHO04x5M006357	1.5e-101	372.9	341	56.0
Pp3c7_23390	Physcomitrium patens	HOM04x5M005027	ORTHO04x5M006357	9.5e-101	370.2	435	46.0
Pp3c11_5520	Physcomitrium patens	HOM04x5M005027	ORTHO04x5M006357	1.1e-99	366.7	436	46.1
Pp3c10_11250	Physcomitrium patens	HOM04x5M005027	ORTHO04x5M006357	2.7e-95	352.1	428	45.6
PAB00065532	Picea abies	HOM04x5M005027	ORTHO04x5M006357	5.2e-91	337.8	384	48.4
Pp3c1_34950	Physcomitrium patens	HOM04x5M005027	ORTHO04x5M006357	3.9e-78	295.0	340	46.5
Zm00008a013291	Zea mays PH207	HOM04x5M005027	ORTHO04x5M006357	2.1e-68	262.7	362	42.0
PEQU_41815	Phalaenopsis equestris	HOM04x5M005027	ORTHO04x5M006357	9.6e-61	237.3	179	63.7
PH01265225G0010	Phyllostachys edulis	HOM04x5M005027	ORTHO04x5M006357	1.1e-53	213.8	171	60.2
PH01000090G0620	Phyllostachys edulis	HOM04x5M005027	ORTHO04x5M006357	2.5e-53	212.6	158	65.2
PEQU_40122	Phalaenopsis equestris	HOM04x5M005027	ORTHO04x5M006357	7.4e-37	157.9	123	62.6
HORVU3Hr1G111690	Hordeum vulgare	HOM04x5M005027	ORTHO04x5M006357	2.5e-32	142.9	122	60.7
PAB00039682	Picea abies	HOM04x5M005027	ORTHO04x5M006357	2.5e-16	89.7	133	39.8
PAB00042765	Picea abies	HOM04x5M005027	ORTHO04x5M006357	2.0e-13	80.1	73	57.5
ATR0693G017	Amborella trichopoda	HOM04x5M005027	ORTHO04x5M006357	7.5e-13	78.2	95	43.2
Zm00008a002569	Zea mays PH207	HOM04x5M005027	ORTHO04x5M256785	1.2e-07	60.8	60	51.7

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment