Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Ma08_g08710	Musa acuminata	HOM04x5M005382	ORTHO04x5M006527	0.0e+00	1159.8	624	100.0
evm.TU.AsparagusV1_04.597.V1.1	Asparagus officinalis	HOM04x5M005382	ORTHO04x5M006527	5.0e-238	826.6	612	73.9
Aco024203	Ananas comosus	HOM04x5M005382	ORTHO04x5M006527	2.0e-226	788.1	555	71.2
PEQU_32184	Phalaenopsis equestris	HOM04x5M005382	ORTHO04x5M006527	1.8e-211	738.4	552	70.5
GSVIVG01007574001	Vitis vinifera	HOM04x5M005382	ORTHO04x5M006527	5.0e-206	720.3	631	64.5
Sobic.003G394300	Sorghum bicolor	HOM04x5M005382	ORTHO04x5M006527	4.0e-203	710.7	608	59.9
CALSI_Maker00005234	Calamus simplicifolius	HOM04x5M005382	ORTHO04x5M006527	4.4e-202	707.2	607	65.2
Misin06G362700	Miscanthus sinensis	HOM04x5M005382	ORTHO04x5M006527	4.4e-202	707.2	608	59.5
Zm00001d042450	Zea mays B73	HOM04x5M005382	ORTHO04x5M006527	2.8e-201	704.5	598	60.2
Zm00007a00017129	Zea mays B104	HOM04x5M005382	ORTHO04x5M006527	2.8e-201	704.5	598	60.2
p5.00_sc00130_p0062	Elaeis guineensis	HOM04x5M005382	ORTHO04x5M006527	3.7e-193	677.6	619	61.6
Seita.5G420200	Setaria italica	HOM04x5M005382	ORTHO04x5M006527	3.5e-191	671.0	609	57.8
ATR0824G019	Amborella trichopoda	HOM04x5M005382	ORTHO04x5M006527	3.0e-187	657.9	630	56.0
OsR498G0102541400.01	Oryza sativa ssp. indica	HOM04x5M005382	ORTHO04x5M006527	7.5e-186	653.3	558	60.0
Pgl_GLEAN_10010471	Cenchrus americanus	HOM04x5M005382	ORTHO04x5M006527	8.3e-185	649.8	572	58.7
LP034953	Lolium perenne	HOM04x5M005382	ORTHO04x5M006527	1.4e-184	649.0	557	59.6
OB01G49790	Oryza brachyantha	HOM04x5M005382	ORTHO04x5M006527	1.4e-184	649.0	555	60.0
Bradi2g58077	Brachypodium distachyon	HOM04x5M005382	ORTHO04x5M006527	5.4e-184	647.1	605	55.7
Solyc06g071850.2	Solanum lycopersicum	HOM04x5M005382	ORTHO04x5M006527	7.8e-183	643.3	632	55.4
Zm00008a013007	Zea mays PH207	HOM04x5M005382	ORTHO04x5M006527	2.0e-175	618.6	544	58.5
TraesCS3B02G422600	Triticum aestivum	HOM04x5M005382	ORTHO04x5M006527	2.3e-174	615.1	610	52.8
TraesCS3A02G390800	Triticum aestivum	HOM04x5M005382	ORTHO04x5M006527	2.5e-173	611.7	611	52.7
TraesCS3D02G383400	Triticum aestivum	HOM04x5M005382	ORTHO04x5M006527	5.6e-173	610.5	599	53.9
HORVU3Hr1G088460	Hordeum vulgare	HOM04x5M005382	ORTHO04x5M006527	2.8e-172	608.2	614	52.4
Zosma79g00200	Zostera marina	HOM04x5M005382	ORTHO04x5M006527	6.2e-172	607.1	591	56.5
TRITD3Bv1G217010	Triticum turgidum	HOM04x5M005382	ORTHO04x5M006527	2.2e-169	598.6	612	51.6
Potri.012G092000	Populus trichocarpa	HOM04x5M005382	ORTHO04x5M006527	7.8e-167	590.1	654	54.7
Misin06G412600	Miscanthus sinensis	HOM04x5M005382	ORTHO04x5M006527	1.7e-166	589.0	469	62.7
HORVU3Hr1G088480	Hordeum vulgare	HOM04x5M005382	ORTHO04x5M006527	3.0e-166	588.2	560	54.6
Sspon.03G0028620-2C	Saccharum spontaneum	HOM04x5M005382	ORTHO04x5M006527	6.6e-166	587.0	844	41.9
TRITD3Av1G230650	Triticum turgidum	HOM04x5M005382	ORTHO04x5M006527	1.9e-165	585.5	578	52.9
LOC_Os01g67920	Oryza sativa ssp. japonica	HOM04x5M005382	ORTHO04x5M006527	6.8e-163	577.0	455	62.9
AT5G63200	Arabidopsis thaliana	HOM04x5M005382	ORTHO04x5M006527	1.5e-162	575.9	626	54.5
PH01000229G0250	Phyllostachys edulis	HOM04x5M005382	ORTHO04x5M006527	4.3e-157	557.8	628	49.0
ASH_gene1600	Apostasia shenzhenica	HOM04x5M005382	ORTHO04x5M006527	2.9e-153	545.0	593	51.4
gene5094	Selaginella moellendorffii	HOM04x5M005382	ORTHO04x5M006527	3.3e-149	531.6	522	57.7
gene7444	Selaginella moellendorffii	HOM04x5M005382	ORTHO04x5M006527	3.3e-149	531.6	522	57.7
Mapoly0013s0178	Marchantia polymorpha	HOM04x5M005382	ORTHO04x5M006527	3.1e-147	525.0	625	50.7
Oropetium_20150105_13135	Oropetium thomaeum	HOM04x5M005382	ORTHO04x5M006527	2.4e-136	488.8	436	58.3
PH01000031G1370	Phyllostachys edulis	HOM04x5M005382	ORTHO04x5M006527	8.7e-118	427.2	629	42.1
Spipo4G0035200	Spirodela polyrhiza	HOM04x5M005382	ORTHO04x5M006527	1.7e-113	412.9	324	63.3
Sspon.03G0028540-1B	Saccharum spontaneum	HOM04x5M000049	ORTHO04x5M006527	1.3e-92	343.6	350	52.9
Spipo4G0035300	Spirodela polyrhiza	HOM04x5M005382	ORTHO04x5M006527	1.5e-69	266.9	253	57.7
Sspon.03G0000770-2B	Saccharum spontaneum	HOM04x5M004483	ORTHO04x5M005884	3.5e-58	229.2	157	70.1
evm.TU.AsparagusV1_05.2410.V1.1	Asparagus officinalis	HOM04x5M005382	ORTHO04x5M006527	1.5e-48	197.2	128	71.9
evm.TU.AsparagusV1_08.1960.V1.1	Asparagus officinalis	HOM04x5M005382	ORTHO04x5M006527	4.7e-47	192.2	128	69.5
PAB00064933	Picea abies	HOM04x5M005382	ORTHO04x5M006527	2.4e-43	179.9	144	65.3
evm.TU.AsparagusV1_08.2080.V1.1	Asparagus officinalis	HOM04x5M005382	ORTHO04x5M006527	1.4e-35	154.1	96	71.9
Oropetium_20150105_13136	Oropetium thomaeum	HOM04x5M005382	ORTHO04x5M006527	5.1e-33	145.6	108	65.7
p5.00_sc00032_p0014	Elaeis guineensis	HOM04x5M005382	ORTHO04x5M006527	8.1e-31	138.3	83	81.9
PAB00061745	Picea abies	HOM04x5M005382	ORTHO04x5M006527	1.8e-30	137.1	122	60.7
PAB00034029	Picea abies	HOM04x5M005382	ORTHO04x5M006527	2.4e-27	126.7	89	67.4
Zjn_sc00034.1.g03860.1.sm.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M005382	ORTHO04x5M006527	2.3e-25	120.2	249	35.3
p5.00_sc00032_p0015	Elaeis guineensis	HOM04x5M005382	ORTHO04x5M006527	1.5e-24	117.5	71	76.1
PAB00026557	Picea abies	HOM04x5M005382	ORTHO04x5M006527	1.2e-21	107.8	124	49.2
Sspon.03G0028620-1B	Saccharum spontaneum	HOM04x5M005382	ORTHO04x5M006527	6.9e-06	55.5	98	34.7

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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