Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Ma05_g31300	Musa acuminata	HOM04x5M005027	ORTHO04x5M006357	1.1e-269	931.4	464	100.0
Ma11_g22440	Musa acuminata	HOM04x5M005027	ORTHO04x5M006357	5.9e-228	792.7	472	85.0
Ma10_g05760	Musa acuminata	HOM04x5M005027	ORTHO04x5M006357	2.1e-201	704.5	456	78.3
p5.00_sc00084_p0029	Elaeis guineensis	HOM04x5M005027	ORTHO04x5M006357	6.0e-180	633.3	433	73.0
Aco014103	Ananas comosus	HOM04x5M005027	ORTHO04x5M006357	2.7e-172	607.8	479	64.7
Seita.5G387000	Setaria italica	HOM04x5M005027	ORTHO04x5M006357	3.2e-165	584.3	466	62.4
Sobic.003G361100	Sorghum bicolor	HOM04x5M005027	ORTHO04x5M006357	7.8e-164	579.7	464	61.9
ASH_gene15536	Apostasia shenzhenica	HOM04x5M005027	ORTHO04x5M006357	1.0e-163	579.3	455	65.3
Misin05G333200	Miscanthus sinensis	HOM04x5M005027	ORTHO04x5M006357	1.1e-162	575.9	462	62.6
Sspon.03G0002320-3C	Saccharum spontaneum	HOM04x5M005027	ORTHO04x5M006357	2.8e-161	571.2	432	63.9
Sspon.03G0002320-1A	Saccharum spontaneum	HOM04x5M005027	ORTHO04x5M006357	8.1e-161	569.7	432	63.9
Zm00007a00044283	Zea mays B104	HOM04x5M005027	ORTHO04x5M006357	4.0e-160	567.4	461	61.8
Misin06G331100	Miscanthus sinensis	HOM04x5M005027	ORTHO04x5M006357	6.9e-160	566.6	429	64.6
TraesCS3D02G361800	Triticum aestivum	HOM04x5M005027	ORTHO04x5M006357	1.5e-159	565.5	459	61.0
Bradi2g55310	Brachypodium distachyon	HOM04x5M005027	ORTHO04x5M006357	2.0e-159	565.1	459	62.1
Zm00001d042811	Zea mays B73	HOM04x5M005027	ORTHO04x5M006357	3.4e-159	564.3	461	61.8
HORVU3Hr1G084830	Hordeum vulgare	HOM04x5M005027	ORTHO04x5M006357	4.5e-159	563.9	459	61.0
Oropetium_20150105_12835	Oropetium thomaeum	HOM04x5M005027	ORTHO04x5M006357	4.5e-159	563.9	466	61.2
TraesCS3A02G368800	Triticum aestivum	HOM04x5M005027	ORTHO04x5M006357	4.5e-159	563.9	459	61.0
OB01G46470	Oryza brachyantha	HOM04x5M005027	ORTHO04x5M006357	2.2e-158	561.6	471	60.1
LOC_Os01g63690	Oryza sativa ssp. japonica	HOM04x5M005027	ORTHO04x5M006357	2.2e-158	561.6	466	61.4
Spipo23G0003600	Spirodela polyrhiza	HOM04x5M005027	ORTHO04x5M006357	2.9e-158	561.2	460	63.5
OsR498G0102361800.01	Oryza sativa ssp. indica	HOM04x5M005027	ORTHO04x5M006357	4.9e-158	560.5	440	63.6
Zjn_sc00040.1.g05820.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M005027	ORTHO04x5M006357	1.9e-157	558.5	470	59.6
Zm00001d012321	Zea mays B73	HOM04x5M005027	ORTHO04x5M006357	9.3e-157	556.2	427	64.2
Zm00007a00042548	Zea mays B104	HOM04x5M005027	ORTHO04x5M006357	9.3e-157	556.2	427	64.2
TraesCS3B02G400800	Triticum aestivum	HOM04x5M005027	ORTHO04x5M006357	1.2e-156	555.8	459	59.7
PH01000004G3370	Phyllostachys edulis	HOM04x5M005027	ORTHO04x5M006357	1.9e-154	548.5	467	59.5
Zjn_sc00009.1.g06110.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M005027	ORTHO04x5M006357	1.3e-153	545.8	422	63.5
TRITD3Av1G221930	Triticum turgidum	HOM04x5M005027	ORTHO04x5M006357	1.8e-144	515.4	426	60.8
Potri.010G191300	Populus trichocarpa	HOM04x5M005027	ORTHO04x5M006357	4.5e-143	510.8	425	59.3
TRITD3Bv1G207870	Triticum turgidum	HOM04x5M005027	ORTHO04x5M006357	2.9e-142	508.1	426	59.4
LP031349	Lolium perenne	HOM04x5M005027	ORTHO04x5M006357	2.5e-141	505.0	452	57.3
GSVIVG01032858001	Vitis vinifera	HOM04x5M005027	ORTHO04x5M006357	3.0e-139	498.0	445	56.4
ATR0618G085	Amborella trichopoda	HOM04x5M005027	ORTHO04x5M006357	1.3e-137	492.7	425	59.5
Potri.008G066000	Populus trichocarpa	HOM04x5M005027	ORTHO04x5M006357	1.0e-131	473.0	426	55.2
AT2G40000	Arabidopsis thaliana	HOM04x5M005027	ORTHO04x5M006357	1.9e-117	425.6	419	50.4
Zosma172g00440	Zostera marina	HOM04x5M005027	ORTHO04x5M006357	5.5e-117	424.1	437	52.6
AT3G55840	Arabidopsis thaliana	HOM04x5M005027	ORTHO04x5M006357	3.5e-111	404.8	434	48.6
Pgl_GLEAN_10020167	Cenchrus americanus	HOM04x5M005027	ORTHO04x5M006357	4.2e-109	397.9	468	47.2
Pp3c2_27180	Physcomitrium patens	HOM04x5M005027	ORTHO04x5M006357	4.5e-103	377.9	446	46.0
Zm00008a032853	Zea mays PH207	HOM04x5M005027	ORTHO04x5M006357	2.2e-102	375.6	344	56.1
Pp3c1_9290	Physcomitrium patens	HOM04x5M005027	ORTHO04x5M006357	7.2e-101	370.5	448	45.8
Pp3c7_23390	Physcomitrium patens	HOM04x5M005027	ORTHO04x5M006357	3.6e-100	368.2	447	45.9
Pp3c11_5520	Physcomitrium patens	HOM04x5M005027	ORTHO04x5M006357	8.0e-100	367.1	448	46.2
Pp3c10_11250	Physcomitrium patens	HOM04x5M005027	ORTHO04x5M006357	3.3e-93	345.1	435	43.9
PAB00065532	Picea abies	HOM04x5M005027	ORTHO04x5M006357	1.4e-88	329.7	369	48.8
Pp3c1_34950	Physcomitrium patens	HOM04x5M005027	ORTHO04x5M006357	1.2e-74	283.5	345	44.1
Zm00008a013291	Zea mays PH207	HOM04x5M005027	ORTHO04x5M006357	1.7e-70	269.6	360	43.3
PEQU_41815	Phalaenopsis equestris	HOM04x5M005027	ORTHO04x5M006357	6.4e-65	251.1	179	68.2
PH01265225G0010	Phyllostachys edulis	HOM04x5M005027	ORTHO04x5M006357	8.4e-57	224.2	171	63.2
PH01000090G0620	Phyllostachys edulis	HOM04x5M005027	ORTHO04x5M006357	1.1e-56	223.8	156	67.9
PEQU_40122	Phalaenopsis equestris	HOM04x5M005027	ORTHO04x5M006357	5.6e-37	158.3	138	59.4
HORVU3Hr1G111690	Hordeum vulgare	HOM04x5M005027	ORTHO04x5M006357	5.8e-34	148.3	122	61.5
PAB00039682	Picea abies	HOM04x5M005027	ORTHO04x5M006357	1.3e-17	94.0	133	39.8
ATR0693G017	Amborella trichopoda	HOM04x5M005027	ORTHO04x5M006357	1.5e-13	80.5	104	43.3
PAB00042765	Picea abies	HOM04x5M005027	ORTHO04x5M006357	6.3e-12	75.1	73	53.4
Zm00008a002569	Zea mays PH207	HOM04x5M005027	ORTHO04x5M256785	2.3e-06	56.6	54	51.9

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment