Monocots PLAZA 4.5 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
LP031349	Lolium perenne	HOM04x5M005027	ORTHO04x5M006357	2.4e-250	867.1	453	100.0
HORVU3Hr1G084830	Hordeum vulgare	HOM04x5M005027	ORTHO04x5M006357	7.3e-207	722.6	456	81.4
TraesCS3D02G361800	Triticum aestivum	HOM04x5M005027	ORTHO04x5M006357	8.9e-205	715.7	456	80.5
TraesCS3A02G368800	Triticum aestivum	HOM04x5M005027	ORTHO04x5M006357	4.4e-204	713.4	456	80.5
TraesCS3B02G400800	Triticum aestivum	HOM04x5M005027	ORTHO04x5M006357	2.4e-202	707.6	456	79.4
Bradi2g55310	Brachypodium distachyon	HOM04x5M005027	ORTHO04x5M006357	2.1e-198	694.5	457	79.2
PH01000004G3370	Phyllostachys edulis	HOM04x5M005027	ORTHO04x5M006357	1.2e-193	678.7	457	76.8
Sobic.003G361100	Sorghum bicolor	HOM04x5M005027	ORTHO04x5M006357	1.3e-190	668.7	458	76.2
Misin05G333200	Miscanthus sinensis	HOM04x5M005027	ORTHO04x5M006357	6.2e-190	666.4	458	75.8
LOC_Os01g63690	Oryza sativa ssp. japonica	HOM04x5M005027	ORTHO04x5M006357	2.4e-189	664.5	461	74.6
Seita.5G387000	Setaria italica	HOM04x5M005027	ORTHO04x5M006357	9.0e-189	662.5	459	74.9
OsR498G0102361800.01	Oryza sativa ssp. indica	HOM04x5M005027	ORTHO04x5M006357	2.6e-188	661.0	461	74.4
TRITD3Av1G221930	Triticum turgidum	HOM04x5M005027	ORTHO04x5M006357	3.4e-188	660.6	442	78.1
Zm00007a00044283	Zea mays B104	HOM04x5M005027	ORTHO04x5M006357	1.7e-187	658.3	457	74.4
TRITD3Bv1G207870	Triticum turgidum	HOM04x5M005027	ORTHO04x5M006357	6.4e-187	656.4	442	77.1
Zm00001d042811	Zea mays B73	HOM04x5M005027	ORTHO04x5M006357	1.4e-186	655.2	457	74.4
OB01G46470	Oryza brachyantha	HOM04x5M005027	ORTHO04x5M006357	1.8e-184	648.3	464	73.3
Zjn_sc00040.1.g05820.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M005027	ORTHO04x5M006357	2.3e-184	647.9	457	74.8
Oropetium_20150105_12835	Oropetium thomaeum	HOM04x5M005027	ORTHO04x5M006357	6.7e-184	646.4	458	74.7
Sspon.03G0002320-1A	Saccharum spontaneum	HOM04x5M005027	ORTHO04x5M006357	9.6e-183	642.5	459	73.9
Sspon.03G0002320-3C	Saccharum spontaneum	HOM04x5M005027	ORTHO04x5M006357	9.6e-183	642.5	459	73.9
Misin06G331100	Miscanthus sinensis	HOM04x5M005027	ORTHO04x5M006357	6.2e-182	639.8	458	73.1
Zjn_sc00009.1.g06110.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M005027	ORTHO04x5M006357	3.5e-169	597.4	415	74.0
Zm00001d012321	Zea mays B73	HOM04x5M005027	ORTHO04x5M006357	4.3e-167	590.5	459	68.6
Zm00007a00042548	Zea mays B104	HOM04x5M005027	ORTHO04x5M006357	4.3e-167	590.5	459	68.6
Pgl_GLEAN_10020167	Cenchrus americanus	HOM04x5M005027	ORTHO04x5M006357	7.0e-141	503.4	462	60.0
Ma05_g31300	Musa acuminata	HOM04x5M005027	ORTHO04x5M006357	2.6e-140	501.5	452	57.3
Ma11_g22440	Musa acuminata	HOM04x5M005027	ORTHO04x5M006357	4.7e-137	490.7	455	56.0
Aco014103	Ananas comosus	HOM04x5M005027	ORTHO04x5M006357	8.8e-136	486.5	434	59.0
p5.00_sc00084_p0029	Elaeis guineensis	HOM04x5M005027	ORTHO04x5M006357	7.0e-133	476.9	430	57.9
Ma10_g05760	Musa acuminata	HOM04x5M005027	ORTHO04x5M006357	6.1e-129	463.8	456	54.6
ASH_gene15536	Apostasia shenzhenica	HOM04x5M005027	ORTHO04x5M006357	7.7e-124	446.8	446	54.5
Spipo23G0003600	Spirodela polyrhiza	HOM04x5M005027	ORTHO04x5M006357	4.7e-121	437.6	430	57.0
Zm00008a032853	Zea mays PH207	HOM04x5M005027	ORTHO04x5M006357	1.5e-114	416.0	399	58.9
GSVIVG01032858001	Vitis vinifera	HOM04x5M005027	ORTHO04x5M006357	4.9e-110	401.0	456	47.8
Potri.010G191300	Populus trichocarpa	HOM04x5M005027	ORTHO04x5M006357	1.8e-104	382.5	429	48.5
ATR0618G085	Amborella trichopoda	HOM04x5M005027	ORTHO04x5M006357	5.2e-104	380.9	435	49.7
Potri.008G066000	Populus trichocarpa	HOM04x5M005027	ORTHO04x5M006357	8.3e-102	373.6	422	47.2
Zm00008a013291	Zea mays PH207	HOM04x5M005027	ORTHO04x5M006357	8.9e-96	353.6	366	55.7
Zosma172g00440	Zostera marina	HOM04x5M005027	ORTHO04x5M006357	7.8e-92	340.5	459	44.9
AT2G40000	Arabidopsis thaliana	HOM04x5M005027	ORTHO04x5M006357	5.1e-91	337.8	442	43.4
AT3G55840	Arabidopsis thaliana	HOM04x5M005027	ORTHO04x5M006357	8.6e-91	337.0	454	43.0
PH01265225G0010	Phyllostachys edulis	HOM04x5M005027	ORTHO04x5M006357	4.6e-84	314.7	170	85.9
Pp3c11_5520	Physcomitrium patens	HOM04x5M005027	ORTHO04x5M006357	7.8e-84	313.9	443	42.0
Pp3c2_27180	Physcomitrium patens	HOM04x5M005027	ORTHO04x5M006357	1.0e-83	313.5	448	41.5
Pp3c1_9290	Physcomitrium patens	HOM04x5M005027	ORTHO04x5M006357	3.0e-83	312.0	443	42.0
Pp3c10_11250	Physcomitrium patens	HOM04x5M005027	ORTHO04x5M006357	2.1e-81	305.8	437	40.5
Pp3c7_23390	Physcomitrium patens	HOM04x5M005027	ORTHO04x5M006357	1.8e-80	302.8	437	41.0
PAB00065532	Picea abies	HOM04x5M005027	ORTHO04x5M006357	5.3e-72	274.6	344	47.7
PH01000090G0620	Phyllostachys edulis	HOM04x5M005027	ORTHO04x5M006357	1.2e-68	263.5	147	89.1
Pp3c1_34950	Physcomitrium patens	HOM04x5M005027	ORTHO04x5M006357	3.4e-63	245.4	345	39.7
PEQU_41815	Phalaenopsis equestris	HOM04x5M005027	ORTHO04x5M006357	5.1e-59	231.5	181	61.9
HORVU3Hr1G111690	Hordeum vulgare	HOM04x5M005027	ORTHO04x5M006357	5.0e-46	188.3	133	75.2
PEQU_40122	Phalaenopsis equestris	HOM04x5M005027	ORTHO04x5M006357	1.3e-14	84.0	89	43.8
PAB00039682	Picea abies	HOM04x5M005027	ORTHO04x5M006357	4.2e-13	79.0	133	35.3
PAB00042765	Picea abies	HOM04x5M005027	ORTHO04x5M006357	8.0e-12	74.7	73	56.2
ATR0693G017	Amborella trichopoda	HOM04x5M005027	ORTHO04x5M006357	7.7e-07	58.2	65	49.2
Sspon.05G0005200-1A	Saccharum spontaneum	HOM04x5M007235	ORTHO04x5M009290	1.7e-06	57.0	40	62.5

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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