Interactive Phylogenetics Module

Gene Id
LOC_Os04g53490

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Include Gene ID Organism Homologous gene familyOrthologous gene family E-value Bitscore Alignment Length Identity Percentage
LOC_Os04g53490 Oryza sativa ssp. japonica HOM04x5M007131 ORTHO04x5M008984 8.6e-200 698.7 343 100.0
OB04G32890 Oryza brachyantha HOM04x5M007131 ORTHO04x5M008984 4.6e-177 623.2 341 90.0
Seita.7G245800 Setaria italica HOM04x5M007131 ORTHO04x5M008984 2.5e-167 590.9 345 84.3
Zm00001d002240 Zea mays B73 HOM04x5M007131 ORTHO04x5M008984 4.0e-165 583.6 342 81.9
Zm00007a00023174 Zea mays B104 HOM04x5M007131 ORTHO04x5M008984 4.0e-165 583.6 342 81.9
Zm00008a006234 Zea mays PH207 HOM04x5M007131 ORTHO04x5M008984 5.2e-165 583.2 341 81.8
Sobic.006G222700 Sorghum bicolor HOM04x5M007131 ORTHO04x5M008984 2.6e-164 580.9 343 81.9
Misin12G234100 Miscanthus sinensis HOM04x5M007131 ORTHO04x5M008984 1.3e-163 578.6 346 82.7
Sspon.05G0003190-2B Saccharum spontaneum HOM04x5M007131 ORTHO04x5M008984 3.8e-163 577.0 332 84.0
Pgl_GLEAN_10027157 Cenchrus americanus HOM04x5M007131 ORTHO04x5M008984 1.1e-162 575.5 345 82.3
Sspon.05G0003190-3C Saccharum spontaneum HOM04x5M007131 ORTHO04x5M008984 2.1e-161 571.2 340 81.8
Sspon.05G0003190-4D Saccharum spontaneum HOM04x5M007131 ORTHO04x5M008984 6.0e-161 569.7 319 85.3
Bradi5g22510 Brachypodium distachyon HOM04x5M007131 ORTHO04x5M008984 7.3e-159 562.8 345 82.9
LP030787 Lolium perenne HOM04x5M007131 ORTHO04x5M008984 1.6e-158 561.6 340 82.1
TraesCS2B02G496600 Triticum aestivum HOM04x5M007131 ORTHO04x5M008984 1.5e-151 538.5 343 78.4
TraesCS2D02G473300 Triticum aestivum HOM04x5M007131 ORTHO04x5M008984 1.3e-150 535.4 343 77.8
TraesCS2A02G473600 Triticum aestivum HOM04x5M007131 ORTHO04x5M008984 2.4e-149 531.2 343 77.8
TRITD2Av1G262980 Triticum turgidum HOM04x5M007131 ORTHO04x5M008984 2.4e-149 531.2 343 77.8
TRITD2Bv1G225350 Triticum turgidum HOM04x5M007131 ORTHO04x5M008984 2.2e-147 524.6 343 77.0
Sspon.05G0003190-1A Saccharum spontaneum HOM04x5M007131 ORTHO04x5M008984 2.3e-144 514.6 274 89.8
PH01001914G0170 Phyllostachys edulis HOM04x5M007131 ORTHO04x5M008984 3.3e-143 510.8 269 91.1
OsR498G0409317800.01 Oryza sativa ssp. indica HOM04x5M007131 ORTHO04x5M008984 7.4e-135 483.0 231 100.0
Zjn_sc00004.1.g10580.1.sm.mk Zoysia japonica ssp. nagirizaki HOM04x5M007131 ORTHO04x5M008984 7.6e-132 473.0 343 71.1
Aco008453 Ananas comosus HOM04x5M007131 ORTHO04x5M008984 1.4e-130 468.8 327 71.3
evm.TU.AsparagusV1_06.202.V1.1 Asparagus officinalis HOM04x5M007131 ORTHO04x5M008984 8.5e-123 443.0 335 66.6
Ma05_g28830 Musa acuminata HOM04x5M007131 ORTHO04x5M008984 1.1e-119 432.6 288 72.9
ATR0752G046 Amborella trichopoda HOM04x5M007131 ORTHO04x5M008984 4.8e-118 427.2 271 75.6
HORVU2Hr1G106880 Hordeum vulgare HOM04x5M007131 ORTHO04x5M008984 3.1e-117 424.5 231 86.6
GSVIVG01001999001 Vitis vinifera HOM04x5M007131 ORTHO04x5M008984 1.5e-116 422.2 294 71.1
Solyc12g005180.1 Solanum lycopersicum HOM04x5M007131 ORTHO04x5M008984 7.7e-116 419.9 289 70.9
Potri.001G420800 Populus trichocarpa HOM04x5M007131 ORTHO04x5M008984 1.3e-115 419.1 314 65.6
Spipo14G0051300 Spirodela polyrhiza HOM04x5M007131 ORTHO04x5M008984 3.7e-110 401.0 298 65.1
AT3G47860 Arabidopsis thaliana HOM04x5M007131 ORTHO04x5M008984 2.6e-108 394.8 312 63.1
ASH_gene3554 Apostasia shenzhenica HOM04x5M007131 ORTHO04x5M008984 6.7e-104 380.2 328 58.5
CALSI_Maker00019885 Calamus simplicifolius HOM04x5M007131 ORTHO04x5M008984 2.7e-97 358.2 312 59.6
Mapoly0115s0028 Marchantia polymorpha HOM04x5M007131 ORTHO04x5M008984 5.2e-96 354.0 327 55.0
gene13953 Selaginella moellendorffii HOM04x5M007131 ORTHO04x5M008984 4.1e-93 344.4 232 67.7
Oropetium_20150105_01760 Oropetium thomaeum HOM04x5M007131 ORTHO04x5M008984 2.0e-92 342.0 177 90.4
Zosma54g00600 Zostera marina HOM04x5M007131 ORTHO04x5M008984 3.5e-92 341.3 323 54.5
gene30656 Selaginella moellendorffii HOM04x5M007131 ORTHO04x5M008984 7.7e-92 340.1 230 67.4
Pp3c9_6110 Physcomitrium patens HOM04x5M007131 ORTHO04x5M008984 1.8e-85 318.9 313 52.4
p5.00_sc01729_p0001 Elaeis guineensis HOM04x5M007131 ORTHO04x5M008984 1.1e-77 293.1 191 73.3
Misin11G220300 Miscanthus sinensis HOM04x5M007131 ORTHO04x5M008984 2.8e-73 278.5 149 89.9
PAB00019132 Picea abies HOM04x5M007131 ORTHO04x5M008984 6.6e-67 257.3 198 60.1
Mapoly0161s0027 Marchantia polymorpha HOM04x5M001954 ORTHO04x5M003798 1.4e-08 63.5 173 28.3
Solyc12g010320.1 Solanum lycopersicum HOM04x5M001954 ORTHO04x5M003798 3.4e-07 58.9 170 28.8
Sobic.004G213100 Sorghum bicolor HOM04x5M001954 ORTHO04x5M003798 2.2e-06 56.2 196 27.0
Misin08G198300 Miscanthus sinensis HOM04x5M001954 ORTHO04x5M003798 8.5e-06 54.3 180 28.3
Sspon.04G0008400-1A Saccharum spontaneum HOM04x5M001954 ORTHO04x5M003798 8.5e-06 54.3 180 28.3

Amborella trichopoda (1 genes)
Ananas comosus (1 genes)
Apostasia shenzhenica (1 genes)
Arabidopsis thaliana (1 genes)
Asparagus officinalis (1 genes)
Brachypodium distachyon (1 genes)
Calamus simplicifolius (1 genes)
Cenchrus americanus (1 genes)
Chlamydomonas reinhardtii (0 genes)
Elaeis guineensis (1 genes)
Hordeum vulgare (1 genes)
Lolium perenne (1 genes)
Marchantia polymorpha (2 genes)
Micromonas commoda (0 genes)
Miscanthus sinensis (3 genes)
Musa acuminata (1 genes)
Oropetium thomaeum (1 genes)
Oryza brachyantha (1 genes)
Oryza sativa ssp. indica (1 genes)
Oryza sativa ssp. japonica (1 genes)
Phalaenopsis equestris (0 genes)
Phyllostachys edulis (1 genes)
Physcomitrium patens (1 genes)
Picea abies (1 genes)
Populus trichocarpa (1 genes)
Saccharum spontaneum (5 genes)
Selaginella moellendorffii (2 genes)
Setaria italica (1 genes)
Solanum lycopersicum (2 genes)
Sorghum bicolor (2 genes)
Spirodela polyrhiza (1 genes)
Triticum aestivum (3 genes)
Triticum turgidum (2 genes)
Vitis vinifera (1 genes)
Zea mays B73 (1 genes)
Zea mays B104 (1 genes)
Zea mays PH207 (1 genes)
Zostera marina (1 genes)
Zoysia japonica ssp. nagirizaki (1 genes)

Program Settings