Interactive Phylogenetics Module

Gene Id
LOC_Os01g67880

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Include Gene ID Organism Homologous gene familyOrthologous gene family E-value Bitscore Alignment Length Identity Percentage
LOC_Os01g67880 Oryza sativa ssp. japonica HOM04x5M004483 ORTHO04x5M005884 7.4e-203 709.1 400 100.0
OsR498G0102540800.01 Oryza sativa ssp. indica HOM04x5M004483 ORTHO04x5M005884 9.6e-203 708.8 400 99.8
OB01G49770 Oryza brachyantha HOM04x5M004483 ORTHO04x5M005884 3.0e-196 687.2 400 90.5
Oropetium_20150105_13133 Oropetium thomaeum HOM04x5M004483 ORTHO04x5M005884 2.5e-190 667.5 398 86.9
Bradi2g58070 Brachypodium distachyon HOM04x5M004483 ORTHO04x5M005884 3.6e-189 663.7 400 87.8
Seita.5G420100 Setaria italica HOM04x5M004483 ORTHO04x5M005884 4.6e-189 663.3 404 92.8
Sspon.03G0000770-3C Saccharum spontaneum HOM04x5M004483 ORTHO04x5M005884 2.3e-188 661.0 404 92.6
Sobic.003G394200 Sorghum bicolor HOM04x5M004483 ORTHO04x5M005884 3.0e-188 660.6 404 92.3
Misin06G362600 Miscanthus sinensis HOM04x5M004483 ORTHO04x5M005884 5.1e-188 659.8 404 92.6
Sspon.03G0000770-2B Saccharum spontaneum HOM04x5M004483 ORTHO04x5M005884 8.8e-188 659.1 404 92.1
Zm00001d042451 Zea mays B73 HOM04x5M004483 ORTHO04x5M005884 1.1e-187 658.7 404 92.3
Zm00007a00032775 Zea mays B104 HOM04x5M004483 ORTHO04x5M005884 1.1e-187 658.7 404 92.3
Zm00008a013008 Zea mays PH207 HOM04x5M004483 ORTHO04x5M005884 1.1e-187 658.7 404 92.3
Misin06G412700 Miscanthus sinensis HOM04x5M004483 ORTHO04x5M005884 1.5e-187 658.3 404 89.4
TraesCS3B02G422700 Triticum aestivum HOM04x5M004483 ORTHO04x5M005884 1.5e-187 658.3 404 90.1
TRITD3Bv1G217030 Triticum turgidum HOM04x5M004483 ORTHO04x5M005884 2.0e-187 657.9 401 89.8
TraesCS3D02G383500 Triticum aestivum HOM04x5M004483 ORTHO04x5M005884 4.4e-187 656.8 404 90.6
LP034954 Lolium perenne HOM04x5M004483 ORTHO04x5M005884 7.4e-187 656.0 402 85.1
HORVU3Hr1G088490 Hordeum vulgare HOM04x5M004483 ORTHO04x5M005884 1.3e-186 655.2 404 88.6
HORVU3Hr1G088450 Hordeum vulgare HOM04x5M004483 ORTHO04x5M005884 1.3e-186 655.2 404 88.6
TraesCS3A02G390900 Triticum aestivum HOM04x5M004483 ORTHO04x5M005884 2.8e-186 654.1 404 89.6
TRITD3Av1G230670 Triticum turgidum HOM04x5M004483 ORTHO04x5M005884 2.8e-186 654.1 404 89.6
Sspon.03G0000770-1A Saccharum spontaneum HOM04x5M004483 ORTHO04x5M005884 6.3e-178 626.3 404 88.9
p5.00_sc00079_p0034 Elaeis guineensis HOM04x5M004483 ORTHO04x5M005884 4.1e-177 623.6 401 85.8
Aco018477 Ananas comosus HOM04x5M004483 ORTHO04x5M005884 7.0e-177 622.9 405 84.9
Ma09_g26670 Musa acuminata HOM04x5M004483 ORTHO04x5M005884 4.2e-174 613.6 400 85.0
CALSI_Maker00040564 Calamus simplicifolius HOM04x5M004483 ORTHO04x5M005884 9.4e-174 612.5 401 85.0
Sspon.03G0045090-1D Saccharum spontaneum HOM04x5M004483 ORTHO04x5M005884 1.0e-172 609.0 404 86.6
Sspon.03G0000770-4D Saccharum spontaneum HOM04x5M004483 ORTHO04x5M005884 1.0e-172 609.0 404 86.6
ASH_gene16649 Apostasia shenzhenica HOM04x5M004483 ORTHO04x5M005884 1.8e-172 608.2 404 82.7
evm.TU.AsparagusV1_07.3477.V1.1 Asparagus officinalis HOM04x5M004483 ORTHO04x5M005884 2.3e-172 607.8 401 83.0
PH01000031G1260 Phyllostachys edulis HOM04x5M004483 ORTHO04x5M005884 1.7e-170 601.7 400 84.0
Ma06_g32990 Musa acuminata HOM04x5M004483 ORTHO04x5M005884 8.2e-170 599.4 398 82.7
PEQU_14398 Phalaenopsis equestris HOM04x5M004483 ORTHO04x5M005884 1.3e-167 592.0 407 79.4
Zosma30g00970 Zostera marina HOM04x5M004483 ORTHO04x5M005884 5.5e-166 586.6 400 82.2
ATR1098G037 Amborella trichopoda HOM04x5M004483 ORTHO04x5M005884 2.3e-164 581.3 399 76.4
Potri.016G023000 Populus trichocarpa HOM04x5M004483 ORTHO04x5M005884 2.2e-162 574.7 401 75.6
Solyc04g049490.2 Solanum lycopersicum HOM04x5M004483 ORTHO04x5M005884 6.3e-162 573.2 400 74.0
Pgl_GLEAN_10010470 Cenchrus americanus HOM04x5M004483 ORTHO04x5M005884 5.4e-161 570.1 407 80.8
AT1G50500 Arabidopsis thaliana HOM04x5M004483 ORTHO04x5M005884 1.2e-157 558.9 399 71.4
GSVIVG01016094001 Vitis vinifera HOM04x5M004483 ORTHO04x5M005884 4.0e-156 553.9 400 77.8
Spipo16G0007900 Spirodela polyrhiza HOM04x5M004483 ORTHO04x5M005884 4.4e-155 550.4 398 71.9
Zjn_sc00034.1.g03870.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM04x5M004483 ORTHO04x5M005884 1.8e-148 528.5 397 76.1
Mapoly0030s0152 Marchantia polymorpha HOM04x5M004483 ORTHO04x5M005884 4.3e-126 454.1 420 58.3
gene23001 Selaginella moellendorffii HOM04x5M004483 ORTHO04x5M005884 3.5e-120 434.5 404 57.7
gene24646 Selaginella moellendorffii HOM04x5M004483 ORTHO04x5M005884 3.5e-120 434.5 404 57.7
Pp3c24_4920 Physcomitrium patens HOM04x5M004483 ORTHO04x5M005884 1.2e-115 419.5 404 54.2
Pp3c8_8190 Physcomitrium patens HOM04x5M004483 ORTHO04x5M005884 4.4e-115 417.5 406 55.7
Zjn_sc00009.1.g03380.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM04x5M004483 ORTHO04x5M005884 2.5e-110 401.7 302 76.2
MCO12G450 Micromonas commoda HOM04x5M004483 ORTHO04x5M005884 8.0e-48 194.1 304 36.5
Cre06.g259600 Chlamydomonas reinhardtii HOM04x5M004483 ORTHO04x5M005884 3.8e-42 175.3 326 33.1
PAB00059840 Picea abies HOM04x5M004483 ORTHO04x5M005884 3.3e-33 145.6 147 69.4
AT1G50970 Arabidopsis thaliana HOM04x5M004483 ORTHO04x5M005884 2.8e-32 142.5 185 50.3
PH01000229G0300 Phyllostachys edulis HOM04x5M004483 ORTHO04x5M005884 3.3e-25 119.0 71 78.9
evm.TU.AsparagusV1_01.70.V1.1 Asparagus officinalis HOM04x5M001647 ORTHO04x5M039403 5.6e-09 65.1 37 78.4
evm.TU.AsparagusV1_04.1246.V1.1 Asparagus officinalis HOM04x5M005851 ORTHO04x5M007066 1.2e-08 63.9 37 75.7

Amborella trichopoda (1 genes)
Ananas comosus (1 genes)
Apostasia shenzhenica (1 genes)
Arabidopsis thaliana (2 genes)
Asparagus officinalis (3 genes)
Brachypodium distachyon (1 genes)
Calamus simplicifolius (1 genes)
Cenchrus americanus (1 genes)
Chlamydomonas reinhardtii (1 genes)
Elaeis guineensis (1 genes)
Hordeum vulgare (2 genes)
Lolium perenne (1 genes)
Marchantia polymorpha (1 genes)
Micromonas commoda (1 genes)
Miscanthus sinensis (2 genes)
Musa acuminata (2 genes)
Oropetium thomaeum (1 genes)
Oryza brachyantha (1 genes)
Oryza sativa ssp. indica (1 genes)
Oryza sativa ssp. japonica (1 genes)
Phalaenopsis equestris (1 genes)
Phyllostachys edulis (2 genes)
Physcomitrium patens (2 genes)
Picea abies (1 genes)
Populus trichocarpa (1 genes)
Saccharum spontaneum (5 genes)
Selaginella moellendorffii (2 genes)
Setaria italica (1 genes)
Solanum lycopersicum (1 genes)
Sorghum bicolor (1 genes)
Spirodela polyrhiza (1 genes)
Triticum aestivum (3 genes)
Triticum turgidum (2 genes)
Vitis vinifera (1 genes)
Zea mays B73 (1 genes)
Zea mays B104 (1 genes)
Zea mays PH207 (1 genes)
Zostera marina (1 genes)
Zoysia japonica ssp. nagirizaki (2 genes)

Program Settings