Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
HORVU3Hr1G111690	Hordeum vulgare	HOM04x5M005027	ORTHO04x5M006357	3.2e-73	276.9	136	100.0
TraesCS3D02G361800	Triticum aestivum	HOM04x5M005027	ORTHO04x5M006357	7.4e-54	212.6	133	82.7
HORVU3Hr1G084830	Hordeum vulgare	HOM04x5M005027	ORTHO04x5M006357	9.6e-54	212.2	122	88.5
TRITD3Bv1G207870	Triticum turgidum	HOM04x5M005027	ORTHO04x5M006357	1.6e-53	211.5	133	82.7
TRITD3Av1G221930	Triticum turgidum	HOM04x5M005027	ORTHO04x5M006357	2.8e-53	210.7	134	82.8
TraesCS3B02G400800	Triticum aestivum	HOM04x5M005027	ORTHO04x5M006357	4.8e-53	209.9	133	82.0
TraesCS3A02G368800	Triticum aestivum	HOM04x5M005027	ORTHO04x5M006357	8.2e-53	209.1	133	81.2
Pgl_GLEAN_10020167	Cenchrus americanus	HOM04x5M005027	ORTHO04x5M006357	6.1e-48	193.0	133	75.2
OB01G46470	Oryza brachyantha	HOM04x5M005027	ORTHO04x5M006357	3.9e-47	190.3	122	79.5
LP031349	Lolium perenne	HOM04x5M005027	ORTHO04x5M006357	6.7e-47	189.5	133	75.2
Seita.5G387000	Setaria italica	HOM04x5M005027	ORTHO04x5M006357	6.7e-47	189.5	133	73.7
Bradi2g55310	Brachypodium distachyon	HOM04x5M005027	ORTHO04x5M006357	2.5e-46	187.6	133	76.7
PH01000004G3370	Phyllostachys edulis	HOM04x5M005027	ORTHO04x5M006357	9.7e-46	185.7	122	76.2
Sobic.003G361100	Sorghum bicolor	HOM04x5M005027	ORTHO04x5M006357	2.2e-45	184.5	133	72.2
Misin05G333200	Miscanthus sinensis	HOM04x5M005027	ORTHO04x5M006357	2.8e-45	184.1	133	71.4
Sspon.03G0002320-1A	Saccharum spontaneum	HOM04x5M005027	ORTHO04x5M006357	2.8e-45	184.1	133	71.4
Sspon.03G0002320-3C	Saccharum spontaneum	HOM04x5M005027	ORTHO04x5M006357	2.8e-45	184.1	133	71.4
LOC_Os01g63690	Oryza sativa ssp. japonica	HOM04x5M005027	ORTHO04x5M006357	6.3e-45	183.0	122	77.9
OsR498G0102361800.01	Oryza sativa ssp. indica	HOM04x5M005027	ORTHO04x5M006357	6.3e-45	183.0	122	77.9
Misin06G331100	Miscanthus sinensis	HOM04x5M005027	ORTHO04x5M006357	8.2e-45	182.6	133	70.7
Zm00007a00044283	Zea mays B104	HOM04x5M005027	ORTHO04x5M006357	1.4e-44	181.8	133	71.4
Zjn_sc00009.1.g06110.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M005027	ORTHO04x5M006357	3.1e-44	180.6	121	76.9
Zm00001d042811	Zea mays B73	HOM04x5M005027	ORTHO04x5M006357	6.9e-44	179.5	133	70.7
Zm00001d012321	Zea mays B73	HOM04x5M005027	ORTHO04x5M006357	2.6e-43	177.6	122	71.3
Zm00007a00042548	Zea mays B104	HOM04x5M005027	ORTHO04x5M006357	2.6e-43	177.6	122	71.3
Oropetium_20150105_12835	Oropetium thomaeum	HOM04x5M005027	ORTHO04x5M006357	3.4e-43	177.2	133	70.7
PH01000090G0620	Phyllostachys edulis	HOM04x5M005027	ORTHO04x5M006357	1.3e-42	175.3	112	79.5
Zjn_sc00040.1.g05820.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M005027	ORTHO04x5M006357	5.0e-42	173.3	133	69.9
Ma05_g31300	Musa acuminata	HOM04x5M005027	ORTHO04x5M006357	2.9e-34	147.5	122	61.5
Ma11_g22440	Musa acuminata	HOM04x5M005027	ORTHO04x5M006357	2.5e-33	144.4	122	60.7
Aco014103	Ananas comosus	HOM04x5M005027	ORTHO04x5M006357	4.2e-33	143.7	122	63.9
p5.00_sc00084_p0029	Elaeis guineensis	HOM04x5M005027	ORTHO04x5M006357	5.1e-31	136.7	122	59.0
Ma10_g05760	Musa acuminata	HOM04x5M005027	ORTHO04x5M006357	2.6e-30	134.4	122	55.7
Spipo23G0003600	Spirodela polyrhiza	HOM04x5M005027	ORTHO04x5M006357	2.4e-28	127.9	122	60.7
ASH_gene15536	Apostasia shenzhenica	HOM04x5M005027	ORTHO04x5M006357	5.3e-28	126.7	126	54.0
Zosma172g00440	Zostera marina	HOM04x5M005027	ORTHO04x5M006357	2.5e-25	117.9	135	47.4
Potri.010G191300	Populus trichocarpa	HOM04x5M005027	ORTHO04x5M006357	1.2e-24	115.5	121	51.2
GSVIVG01032858001	Vitis vinifera	HOM04x5M005027	ORTHO04x5M006357	1.6e-24	115.2	131	46.6
Zm00008a032853	Zea mays PH207	HOM04x5M005027	ORTHO04x5M006357	3.6e-24	114.0	76	71.1
Potri.008G066000	Populus trichocarpa	HOM04x5M005027	ORTHO04x5M006357	3.9e-23	110.5	121	48.8
ATR0618G085	Amborella trichopoda	HOM04x5M005027	ORTHO04x5M006357	5.7e-22	106.7	128	48.4
AT3G55840	Arabidopsis thaliana	HOM04x5M005027	ORTHO04x5M006357	3.1e-20	100.9	123	46.3
AT2G40000	Arabidopsis thaliana	HOM04x5M005027	ORTHO04x5M006357	4.5e-19	97.1	117	47.9
Pp3c11_5520	Physcomitrium patens	HOM04x5M005027	ORTHO04x5M006357	1.9e-17	91.7	133	41.4
PAB00065532	Picea abies	HOM04x5M005027	ORTHO04x5M006357	2.5e-17	91.3	128	42.2
Zm00008a013291	Zea mays PH207	HOM04x5M005027	ORTHO04x5M006357	7.2e-17	89.7	67	67.2
Pp3c1_9290	Physcomitrium patens	HOM04x5M005027	ORTHO04x5M006357	3.6e-16	87.4	133	41.4
Pp3c2_27180	Physcomitrium patens	HOM04x5M005027	ORTHO04x5M006357	6.1e-16	86.7	135	40.7
Pp3c7_23390	Physcomitrium patens	HOM04x5M005027	ORTHO04x5M006357	1.8e-15	85.1	133	39.1
Pp3c10_11250	Physcomitrium patens	HOM04x5M005027	ORTHO04x5M006357	2.3e-15	84.7	129	38.0
PH01265225G0010	Phyllostachys edulis	HOM04x5M005027	ORTHO04x5M006357	7.5e-14	79.7	54	72.2
PEQU_41815	Phalaenopsis equestris	HOM04x5M005027	ORTHO04x5M006357	1.4e-07	58.9	72	43.1
Pp3c1_34950	Physcomitrium patens	HOM04x5M005027	ORTHO04x5M006357	5.2e-07	57.0	82	37.8

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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