Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
GSVIVG01032858001	Vitis vinifera	HOM04x5M005027	ORTHO04x5M006357	1.3e-275	951.0	475	100.0
Potri.010G191300	Populus trichocarpa	HOM04x5M005027	ORTHO04x5M006357	6.1e-172	606.7	475	64.2
Potri.008G066000	Populus trichocarpa	HOM04x5M005027	ORTHO04x5M006357	1.7e-169	598.6	449	65.3
AT2G40000	Arabidopsis thaliana	HOM04x5M005027	ORTHO04x5M006357	3.1e-147	524.6	437	60.6
AT3G55840	Arabidopsis thaliana	HOM04x5M005027	ORTHO04x5M006357	1.4e-139	499.2	432	59.5
p5.00_sc00084_p0029	Elaeis guineensis	HOM04x5M005027	ORTHO04x5M006357	9.9e-138	493.0	437	58.4
Ma05_g31300	Musa acuminata	HOM04x5M005027	ORTHO04x5M006357	4.9e-137	490.7	445	56.4
Ma11_g22440	Musa acuminata	HOM04x5M005027	ORTHO04x5M006357	1.5e-133	479.2	412	58.3
Spipo23G0003600	Spirodela polyrhiza	HOM04x5M005027	ORTHO04x5M006357	1.9e-133	478.8	468	54.1
ATR0618G085	Amborella trichopoda	HOM04x5M005027	ORTHO04x5M006357	2.5e-133	478.4	421	57.2
Aco014103	Ananas comosus	HOM04x5M005027	ORTHO04x5M006357	3.0e-126	454.9	423	56.7
Ma10_g05760	Musa acuminata	HOM04x5M005027	ORTHO04x5M006357	5.6e-125	450.7	449	53.2
Seita.5G387000	Setaria italica	HOM04x5M005027	ORTHO04x5M006357	2.1e-124	448.7	459	52.3
ASH_gene15536	Apostasia shenzhenica	HOM04x5M005027	ORTHO04x5M006357	2.4e-123	445.3	444	53.2
Misin06G331100	Miscanthus sinensis	HOM04x5M005027	ORTHO04x5M006357	5.8e-122	440.7	419	54.9
HORVU3Hr1G084830	Hordeum vulgare	HOM04x5M005027	ORTHO04x5M006357	1.7e-121	439.1	464	52.6
Sobic.003G361100	Sorghum bicolor	HOM04x5M005027	ORTHO04x5M006357	1.7e-121	439.1	438	53.0
Sspon.03G0002320-3C	Saccharum spontaneum	HOM04x5M005027	ORTHO04x5M006357	1.7e-121	439.1	420	54.5
Zm00001d042811	Zea mays B73	HOM04x5M005027	ORTHO04x5M006357	2.2e-121	438.7	458	51.7
Zm00007a00044283	Zea mays B104	HOM04x5M005027	ORTHO04x5M006357	2.9e-121	438.3	458	51.5
Sspon.03G0002320-1A	Saccharum spontaneum	HOM04x5M005027	ORTHO04x5M006357	4.9e-121	437.6	420	54.5
Zjn_sc00040.1.g05820.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M005027	ORTHO04x5M006357	6.4e-121	437.2	450	52.0
TraesCS3D02G361800	Triticum aestivum	HOM04x5M005027	ORTHO04x5M006357	1.1e-120	436.4	455	52.5
Oropetium_20150105_12835	Oropetium thomaeum	HOM04x5M005027	ORTHO04x5M006357	1.9e-120	435.6	452	52.2
LOC_Os01g63690	Oryza sativa ssp. japonica	HOM04x5M005027	ORTHO04x5M006357	2.4e-120	435.3	415	54.2
OsR498G0102361800.01	Oryza sativa ssp. indica	HOM04x5M005027	ORTHO04x5M006357	2.4e-120	435.3	415	54.2
Misin05G333200	Miscanthus sinensis	HOM04x5M005027	ORTHO04x5M006357	3.2e-120	434.9	461	51.2
Bradi2g55310	Brachypodium distachyon	HOM04x5M005027	ORTHO04x5M006357	4.2e-120	434.5	435	53.6
TraesCS3B02G400800	Triticum aestivum	HOM04x5M005027	ORTHO04x5M006357	9.3e-120	433.3	464	51.7
Zosma172g00440	Zostera marina	HOM04x5M005027	ORTHO04x5M006357	1.2e-119	433.0	419	54.9
PH01000004G3370	Phyllostachys edulis	HOM04x5M005027	ORTHO04x5M006357	1.8e-118	429.1	464	50.9
TraesCS3A02G368800	Triticum aestivum	HOM04x5M005027	ORTHO04x5M006357	2.3e-118	428.7	464	51.9
OB01G46470	Oryza brachyantha	HOM04x5M005027	ORTHO04x5M006357	3.0e-118	428.3	468	51.1
Zjn_sc00009.1.g06110.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M005027	ORTHO04x5M006357	1.1e-115	419.9	456	50.2
Zm00001d012321	Zea mays B73	HOM04x5M005027	ORTHO04x5M006357	2.4e-115	418.7	420	52.4
Zm00007a00042548	Zea mays B104	HOM04x5M005027	ORTHO04x5M006357	2.4e-115	418.7	420	52.4
LP031349	Lolium perenne	HOM04x5M005027	ORTHO04x5M006357	3.3e-109	398.3	456	47.8
TRITD3Bv1G207870	Triticum turgidum	HOM04x5M005027	ORTHO04x5M006357	4.0e-107	391.3	429	50.6
TRITD3Av1G221930	Triticum turgidum	HOM04x5M005027	ORTHO04x5M006357	1.7e-105	386.0	429	50.8
Pp3c1_9290	Physcomitrium patens	HOM04x5M005027	ORTHO04x5M006357	2.5e-96	355.5	434	44.2
Pp3c2_27180	Physcomitrium patens	HOM04x5M005027	ORTHO04x5M006357	2.3e-94	349.0	434	43.5
Pp3c11_5520	Physcomitrium patens	HOM04x5M005027	ORTHO04x5M006357	3.3e-93	345.1	434	43.3
Pp3c10_11250	Physcomitrium patens	HOM04x5M005027	ORTHO04x5M006357	3.3e-93	345.1	420	44.5
Pp3c7_23390	Physcomitrium patens	HOM04x5M005027	ORTHO04x5M006357	2.4e-91	339.0	434	41.9
Zm00008a032853	Zea mays PH207	HOM04x5M005027	ORTHO04x5M006357	8.8e-86	320.5	309	53.1
Pgl_GLEAN_10020167	Cenchrus americanus	HOM04x5M005027	ORTHO04x5M006357	4.1e-83	311.6	283	56.2
PAB00065532	Picea abies	HOM04x5M005027	ORTHO04x5M006357	1.5e-82	309.7	373	45.8
Pp3c1_34950	Physcomitrium patens	HOM04x5M005027	ORTHO04x5M006357	5.9e-74	281.2	331	45.0
PEQU_41815	Phalaenopsis equestris	HOM04x5M005027	ORTHO04x5M006357	1.6e-58	229.9	177	60.5
Zm00008a013291	Zea mays PH207	HOM04x5M005027	ORTHO04x5M006357	1.1e-56	223.8	335	40.0
PH01265225G0010	Phyllostachys edulis	HOM04x5M005027	ORTHO04x5M006357	1.7e-52	209.9	171	59.1
PH01000090G0620	Phyllostachys edulis	HOM04x5M005027	ORTHO04x5M006357	1.3e-36	157.1	158	50.6
PEQU_40122	Phalaenopsis equestris	HOM04x5M005027	ORTHO04x5M006357	1.0e-25	120.9	119	52.1
HORVU3Hr1G111690	Hordeum vulgare	HOM04x5M005027	ORTHO04x5M006357	3.6e-23	112.5	131	46.6
PAB00039682	Picea abies	HOM04x5M005027	ORTHO04x5M006357	1.5e-13	80.5	133	36.1
PAB00042765	Picea abies	HOM04x5M005027	ORTHO04x5M006357	2.6e-13	79.7	82	50.0
ATR0693G017	Amborella trichopoda	HOM04x5M005027	ORTHO04x5M006357	2.7e-10	69.7	52	59.6
Zm00008a002569	Zea mays PH207	HOM04x5M005027	ORTHO04x5M256785	2.4e-06	56.6	80	41.2

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment