Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
CALSI_Maker00044657	Calamus simplicifolius	HOM04x5M002570	ORTHO04x5M002687	1.9e-48	194.1	93	100.0
p5.00_sc00037_p0129	Elaeis guineensis	HOM04x5M002570	ORTHO04x5M002687	1.9e-29	131.0	68	88.2
p5.00_sc00131_p0015	Elaeis guineensis	HOM04x5M002570	ORTHO04x5M002687	3.3e-29	130.2	69	87.0
Ma08_g26310	Musa acuminata	HOM04x5M002570	ORTHO04x5M002687	2.4e-27	124.0	70	81.4
CALSI_Maker00032927	Calamus simplicifolius	HOM04x5M002570	ORTHO04x5M002687	6.9e-27	122.5	66	86.4
Ma09_g18710	Musa acuminata	HOM04x5M002570	ORTHO04x5M002687	4.5e-26	119.8	79	69.6
ASH_gene16039	Apostasia shenzhenica	HOM04x5M002570	ORTHO04x5M002687	3.2e-24	113.6	74	70.3
Ma09_g28270	Musa acuminata	HOM04x5M002570	ORTHO04x5M002687	5.1e-22	106.3	61	75.4
Aco000751	Ananas comosus	HOM04x5M002570	ORTHO04x5M002687	6.7e-22	105.9	69	72.5
Ma09_g12020	Musa acuminata	HOM04x5M002570	ORTHO04x5M002687	6.7e-22	105.9	59	79.7
p5.00_sc00096_p0028	Elaeis guineensis	HOM04x5M002570	ORTHO04x5M002687	1.1e-19	98.6	71	67.6
CALSI_Maker00014448	Calamus simplicifolius	HOM04x5M002570	ORTHO04x5M002687	4.0e-19	96.7	71	66.2
Spipo0G0079200	Spirodela polyrhiza	HOM04x5M002570	ORTHO04x5M002687	1.2e-18	95.1	67	71.6
CALSI_Maker00038910	Calamus simplicifolius	HOM04x5M002570	ORTHO04x5M002687	3.4e-18	93.6	69	65.2
Spipo12G0037900	Spirodela polyrhiza	HOM04x5M002570	ORTHO04x5M002687	3.8e-17	90.1	67	62.7
Seita.6G206100	Setaria italica	HOM04x5M002570	ORTHO04x5M002687	8.4e-17	89.0	61	70.5
Misin13G182000	Miscanthus sinensis	HOM04x5M002570	ORTHO04x5M002687	1.9e-16	87.8	62	67.7
Sobic.007G209500	Sorghum bicolor	HOM04x5M002570	ORTHO04x5M002687	1.9e-16	87.8	62	67.7
GSVIVG01001371001	Vitis vinifera	HOM04x5M002570	ORTHO04x5M002687	1.9e-16	87.8	68	58.8
p5.00_sc00020_p0160	Elaeis guineensis	HOM04x5M002570	ORTHO04x5M002687	3.2e-16	87.0	71	63.4
Sspon.06G0001740-1A	Saccharum spontaneum	HOM04x5M002570	ORTHO04x5M002687	5.5e-16	86.3	62	66.1
Sspon.06G0001740-2D	Saccharum spontaneum	HOM04x5M002570	ORTHO04x5M002687	5.5e-16	86.3	62	66.1
TraesCS7D02G245800	Triticum aestivum	HOM04x5M002570	ORTHO04x5M002687	1.2e-15	85.1	73	61.6
Zm00008a003238	Zea mays PH207	HOM04x5M002570	ORTHO04x5M002687	1.2e-15	85.1	65	63.1
TraesCS7A02G247200	Triticum aestivum	HOM04x5M002570	ORTHO04x5M002687	1.6e-15	84.7	73	61.6
Zm00001d031454	Zea mays B73	HOM04x5M002570	ORTHO04x5M002687	1.6e-15	84.7	70	58.6
Zm00007a00022852	Zea mays B104	HOM04x5M002570	ORTHO04x5M002687	1.6e-15	84.7	70	58.6
ATR0605G388	Amborella trichopoda	HOM04x5M002570	ORTHO04x5M002687	2.1e-15	84.3	71	53.5
Misin07G233600	Miscanthus sinensis	HOM04x5M002570	ORTHO04x5M002687	2.1e-15	84.3	61	65.6
Seita.2G254700	Setaria italica	HOM04x5M002570	ORTHO04x5M002687	2.1e-15	84.3	71	62.0
TraesCS7B02G144300	Triticum aestivum	HOM04x5M002570	ORTHO04x5M002687	3.5e-15	83.6	73	61.6
HORVU7Hr1G050770	Hordeum vulgare	HOM04x5M002570	ORTHO04x5M002687	6.0e-15	82.8	73	60.3
LOC_Os09g31454	Oryza sativa ssp. japonica	HOM04x5M002570	ORTHO04x5M002687	7.9e-15	82.4	60	66.7
OsR498G0917730800.01	Oryza sativa ssp. indica	HOM04x5M002570	ORTHO04x5M002687	7.9e-15	82.4	60	66.7
Sspon.02G0037080-1B	Saccharum spontaneum	HOM04x5M002570	ORTHO04x5M002687	7.9e-15	82.4	59	67.8
Sspon.02G0037080-3D	Saccharum spontaneum	HOM04x5M002570	ORTHO04x5M002687	7.9e-15	82.4	59	67.8
Sspon.02G0037080-2C	Saccharum spontaneum	HOM04x5M002570	ORTHO04x5M002687	7.9e-15	82.4	59	67.8
Zjn_sc00008.1.g09320.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M002412	ORTHO04x5M002551	7.9e-15	82.4	59	67.8
MisinT266000	Miscanthus sinensis	HOM04x5M002570	ORTHO04x5M002687	1.0e-14	82.0	59	67.8
Misin04G229900	Miscanthus sinensis	HOM04x5M002570	ORTHO04x5M002687	1.3e-14	81.6	59	67.8
Sobic.002G248600	Sorghum bicolor	HOM04x5M002570	ORTHO04x5M002687	1.3e-14	81.6	59	67.8
HORVU5Hr1G073540	Hordeum vulgare	HOM04x5M002570	ORTHO04x5M002687	2.3e-14	80.9	64	65.6
HORVU5Hr1G073580	Hordeum vulgare	HOM04x5M002570	ORTHO04x5M002687	2.3e-14	80.9	64	65.6
OsR498G0816445800.01	Oryza sativa ssp. indica	HOM04x5M002570	ORTHO04x5M002687	2.3e-14	80.9	67	58.2
OB09G21390	Oryza brachyantha	HOM04x5M002570	ORTHO04x5M002687	5.1e-14	79.7	57	68.4
Zm00001d020947	Zea mays B73	HOM04x5M002570	ORTHO04x5M002687	5.1e-14	79.7	59	66.1
Zm00007a00035265	Zea mays B104	HOM04x5M002570	ORTHO04x5M002687	5.1e-14	79.7	59	66.1
Zm00008a028437	Zea mays PH207	HOM04x5M002570	ORTHO04x5M002687	5.1e-14	79.7	59	66.1
TraesCS5B02G266200	Triticum aestivum	HOM04x5M002570	ORTHO04x5M002687	6.7e-14	79.3	64	65.6
TRITD5Bv1G149570	Triticum turgidum	HOM04x5M002570	ORTHO04x5M002687	6.7e-14	79.3	64	65.6
Bradi4g33820	Brachypodium distachyon	HOM04x5M002570	ORTHO04x5M002687	8.7e-14	79.0	59	66.1
LOC_Os08g39980	Oryza sativa ssp. japonica	HOM04x5M002570	ORTHO04x5M002687	8.7e-14	79.0	66	57.6
AT2G42150	Arabidopsis thaliana	HOM04x5M002570	ORTHO04x5M002687	1.1e-13	78.6	84	48.8
Oropetium_20150105_05500	Oropetium thomaeum	HOM04x5M002570	ORTHO04x5M002687	1.5e-13	78.2	59	66.1
AT2G44430	Arabidopsis thaliana	HOM04x5M002570	ORTHO04x5M002687	2.5e-13	77.4	57	63.2
TraesCS5D02G274400	Triticum aestivum	HOM04x5M002570	ORTHO04x5M002687	4.3e-13	76.6	60	66.7
TraesCS5A02G266600	Triticum aestivum	HOM04x5M002570	ORTHO04x5M002687	4.3e-13	76.6	60	66.7
p5.00_sc00154_p0058	Elaeis guineensis	HOM04x5M006888	ORTHO04x5M008419	5.6e-13	76.3	55	58.2
Potri.003G212500	Populus trichocarpa	HOM04x5M002570	ORTHO04x5M002687	1.3e-12	75.1	78	48.7
Zosma54g00430	Zostera marina	HOM04x5M002570	ORTHO04x5M002687	1.3e-12	75.1	60	60.0
AT3G60110	Arabidopsis thaliana	HOM04x5M002570	ORTHO04x5M002687	2.1e-12	74.3	57	57.9
LP013034	Lolium perenne	HOM04x5M002570	ORTHO04x5M002687	2.1e-12	74.3	69	55.1
AT3G57980	Arabidopsis thaliana	HOM04x5M002570	ORTHO04x5M002687	2.8e-12	73.9	59	57.6
Potri.001G229300	Populus trichocarpa	HOM04x5M002570	ORTHO04x5M002687	2.8e-12	73.9	58	60.3
Solyc01g073950.2	Solanum lycopersicum	HOM04x5M002570	ORTHO04x5M002687	6.2e-12	72.8	58	55.2
ATR0693G270	Amborella trichopoda	HOM04x5M002570	ORTHO04x5M002687	2.4e-11	70.9	54	51.9
Bradi3g40060	Brachypodium distachyon	HOM04x5M002570	ORTHO04x5M002687	2.4e-11	70.9	63	55.6
LP030104	Lolium perenne	HOM04x5M002570	ORTHO04x5M002687	3.1e-11	70.5	48	68.8
Solyc10g009160.2	Solanum lycopersicum	HOM04x5M006888	ORTHO04x5M008419	2.0e-10	67.8	58	48.3
Bradi1g24580	Brachypodium distachyon	HOM04x5M006888	ORTHO04x5M008419	7.6e-10	65.9	56	48.2
PAB00022580	Picea abies	HOM04x5M002570	ORTHO04x5M002687	7.6e-10	65.9	55	49.1
PAB00062047	Picea abies	HOM04x5M002570	ORTHO04x5M002687	7.6e-10	65.9	55	49.1
CALSI_Maker00044427	Calamus simplicifolius	HOM04x5M006888	ORTHO04x5M008419	1.3e-09	65.1	55	49.1
Potri.004G036900	Populus trichocarpa	HOM04x5M006888	ORTHO04x5M008419	1.3e-09	65.1	58	53.4
Potri.001G013600	Populus trichocarpa	HOM04x5M002570	ORTHO04x5M002687	1.7e-09	64.7	76	47.4
CALSI_Maker00019150	Calamus simplicifolius	HOM04x5M006888	ORTHO04x5M008419	3.8e-09	63.5	41	63.4
LP000741	Lolium perenne	HOM04x5M006888	ORTHO04x5M008419	3.8e-09	63.5	56	48.2
Solyc02g078810.2	Solanum lycopersicum	HOM04x5M006888	ORTHO04x5M008419	3.8e-09	63.5	44	56.8
Zjn_sc00015.1.g05520.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M002412	ORTHO04x5M002551	4.9e-09	63.2	50	62.0
PAB00018157	Picea abies	HOM04x5M002570	ORTHO04x5M002687	1.4e-08	61.6	54	48.1
OB07G24680	Oryza brachyantha	HOM04x5M006888	ORTHO04x5M008419	3.2e-08	60.5	56	44.6
Spipo14G0058400	Spirodela polyrhiza	HOM04x5M006888	ORTHO04x5M008419	4.2e-08	60.1	63	44.4
PH01001573G0060	Phyllostachys edulis	HOM04x5M002570	ORTHO04x5M002687	5.5e-08	59.7	30	83.3
TraesCS2A02G202700	Triticum aestivum	HOM04x5M006888	ORTHO04x5M008419	1.6e-07	58.2	55	47.3
TRITD2Av1G074100	Triticum turgidum	HOM04x5M006888	ORTHO04x5M008419	1.6e-07	58.2	55	47.3
Zosma16g01780	Zostera marina	HOM04x5M002570	ORTHO04x5M002687	1.6e-07	58.2	69	43.5
TraesCS2B02G229800	Triticum aestivum	HOM04x5M006888	ORTHO04x5M008419	2.1e-07	57.8	55	47.3
TraesCS2D02G213000	Triticum aestivum	HOM04x5M006888	ORTHO04x5M008419	2.1e-07	57.8	55	47.3
TRITD2Bv1G083420	Triticum turgidum	HOM04x5M006888	ORTHO04x5M008419	2.1e-07	57.8	55	47.3
Zjn_sc00001.1.g06600.1.sm.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M006888	ORTHO04x5M008419	2.1e-07	57.8	56	44.6
AT1G61215	Arabidopsis thaliana	HOM04x5M006888	ORTHO04x5M008419	2.7e-07	57.4	54	50.0
PH01003906G0090	Phyllostachys edulis	HOM04x5M006888	ORTHO04x5M008419	2.7e-07	57.4	60	45.0
Aco009146	Ananas comosus	HOM04x5M006888	ORTHO04x5M008419	4.6e-07	56.6	41	56.1
TRITD5Av1G160060	Triticum turgidum	HOM04x5M002570	ORTHO04x5M002687	4.6e-07	56.6	59	54.2
Zjn_sc00008.1.g10910.1.sm.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M006888	ORTHO04x5M008419	1.3e-06	55.1	56	41.1
Pgl_GLEAN_10009993	Cenchrus americanus	HOM04x5M002570	ORTHO04x5M002687	1.8e-06	54.7	27	88.9
Zm00007a00040219	Zea mays B104	HOM04x5M006888	ORTHO04x5M008419	1.8e-06	54.7	56	42.9
Pp3c17_1160	Physcomitrium patens	HOM04x5M002570	ORTHO04x5M002687	5.1e-06	53.1	66	39.4
Pp3c17_1175	Physcomitrium patens	HOM04x5M002570	ORTHO04x5M002687	5.1e-06	53.1	66	39.4

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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