Monocots PLAZA 4.5 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Aco031821	Ananas comosus	HOM04x5M007747	ORTHO04x5M009652	1.3e-21	106.7	320	100.0
Aco021763	Ananas comosus	HOM04x5M001523	ORTHO04x5M009652	1.1e-18	97.1	73	100.0
Misin10G043900	Miscanthus sinensis	HOM04x5M007747	ORTHO04x5M009652	1.2e-06	57.0	47	63.8
PH01000095G0350	Phyllostachys edulis	HOM04x5M007747	ORTHO04x5M009652	1.2e-06	57.0	47	63.8
Bradi4g36740	Brachypodium distachyon	HOM04x5M007747	ORTHO04x5M009652	1.6e-06	56.6	47	61.7
PH01000368G0910	Phyllostachys edulis	HOM04x5M007747	ORTHO04x5M009652	1.6e-06	56.6	47	61.7
Misin09G054300	Miscanthus sinensis	HOM04x5M007747	ORTHO04x5M009652	2.1e-06	56.2	47	63.8
Sobic.005G059400	Sorghum bicolor	HOM04x5M007747	ORTHO04x5M009652	2.1e-06	56.2	47	63.8
Sspon.05G0029350-2C	Saccharum spontaneum	HOM04x5M007747	ORTHO04x5M009652	2.1e-06	56.2	47	63.8
Sspon.05G0029350-3D	Saccharum spontaneum	HOM04x5M007747	ORTHO04x5M009652	2.1e-06	56.2	47	63.8
Zm00001d053026	Zea mays B73	HOM04x5M007747	ORTHO04x5M009652	2.1e-06	56.2	47	63.8
Seita.8G053900	Setaria italica	HOM04x5M007747	ORTHO04x5M009652	4.6e-06	55.1	47	61.7
Ma00_g00850	Musa acuminata	HOM04x5M007747	ORTHO04x5M009652	7.9e-06	54.3	46	58.7

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment