Monocots PLAZA 4.5 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Aco029943	Ananas comosus	HOM04x5M006081	ORTHO04x5M007269	9.5e-44	178.3	84	100.0
Aco027262	Ananas comosus	HOM04x5M006081	ORTHO04x5M007269	1.5e-28	127.9	86	75.6
ATR0796G343	Amborella trichopoda	HOM04x5M006081	ORTHO04x5M007269	1.4e-18	94.7	82	57.3
CALSI_Maker00008063	Calamus simplicifolius	HOM04x5M006081	ORTHO04x5M007269	1.8e-18	94.4	73	60.3
p5.00_sc00044_p0112	Elaeis guineensis	HOM04x5M006081	ORTHO04x5M007269	2.4e-18	94.0	86	54.7
Zosma2g03360	Zostera marina	HOM04x5M006081	ORTHO04x5M007269	2.4e-18	94.0	57	70.2
Oropetium_20150105_07243	Oropetium thomaeum	HOM04x5M006081	ORTHO04x5M007269	5.8e-17	89.4	79	55.7
GSVIVG01027976001	Vitis vinifera	HOM04x5M006081	ORTHO04x5M007269	4.9e-16	86.3	79	51.9
Zm00008a010977	Zea mays PH207	HOM04x5M006081	ORTHO04x5M007269	1.4e-15	84.7	61	59.0
LP000758	Lolium perenne	HOM04x5M006081	ORTHO04x5M007269	3.2e-15	83.6	85	51.8
Bradi2g04440	Brachypodium distachyon	HOM04x5M006081	ORTHO04x5M007269	5.4e-15	82.8	78	53.8
evm.TU.AsparagusV1_05.3151.V1.1	Asparagus officinalis	HOM04x5M006081	ORTHO04x5M007269	7.1e-15	82.4	73	57.5
Misin05G055500	Miscanthus sinensis	HOM04x5M006081	ORTHO04x5M007269	9.3e-15	82.0	77	51.9
Misin06G044300	Miscanthus sinensis	HOM04x5M006081	ORTHO04x5M007269	9.3e-15	82.0	77	51.9
Sspon.03G0043870-1C	Saccharum spontaneum	HOM04x5M006081	ORTHO04x5M007269	2.7e-14	80.5	75	52.0
TraesCS3A02G089700	Triticum aestivum	HOM04x5M006081	ORTHO04x5M007269	2.7e-14	80.5	85	48.2
TRITD3Av1G025860	Triticum turgidum	HOM04x5M006081	ORTHO04x5M007269	2.7e-14	80.5	85	48.2
PEQU_04291	Phalaenopsis equestris	HOM04x5M006081	ORTHO04x5M007269	3.5e-14	80.1	77	48.1
TraesCS3D02G089900	Triticum aestivum	HOM04x5M006081	ORTHO04x5M007269	4.6e-14	79.7	85	48.2
OB01G14460	Oryza brachyantha	HOM04x5M006081	ORTHO04x5M007269	1.0e-13	78.6	74	54.1
Zm00001d039675	Zea mays B73	HOM04x5M006081	ORTHO04x5M007269	1.0e-13	78.6	75	50.7
Sobic.003G050900	Sorghum bicolor	HOM04x5M006081	ORTHO04x5M007269	1.3e-13	78.2	75	52.0
Seita.5G121500	Setaria italica	HOM04x5M006081	ORTHO04x5M007269	2.3e-13	77.4	50	64.0
TraesCS3B02G105200	Triticum aestivum	HOM04x5M006081	ORTHO04x5M007269	2.3e-13	77.4	84	47.6
TRITD3Bv1G029940	Triticum turgidum	HOM04x5M006081	ORTHO04x5M007269	2.3e-13	77.4	84	47.6
Pgl_GLEAN_10028957	Cenchrus americanus	HOM04x5M006081	ORTHO04x5M007269	3.9e-13	76.6	50	60.0
Mapoly0077s0004	Marchantia polymorpha	HOM04x5M006081	ORTHO04x5M007269	6.7e-13	75.9	86	46.5
LOC_Os01g07720	Oryza sativa ssp. japonica	HOM04x5M006081	ORTHO04x5M007269	8.7e-13	75.5	45	68.9
OsR498G0100241600.01	Oryza sativa ssp. indica	HOM04x5M006081	ORTHO04x5M007269	8.7e-13	75.5	45	68.9
Solyc09g074900.2	Solanum lycopersicum	HOM04x5M006081	ORTHO04x5M007269	5.6e-12	72.8	80	47.5
Spipo3G0037100	Spirodela polyrhiza	HOM04x5M006081	ORTHO04x5M007269	8.1e-11	68.9	86	46.5
gene34568	Selaginella moellendorffii	HOM04x5M006081	ORTHO04x5M007269	4.5e-09	63.2	74	47.3
gene12413	Selaginella moellendorffii	HOM04x5M006081	ORTHO04x5M007269	4.5e-09	63.2	74	47.3
Pp3c10_8510	Physcomitrium patens	HOM04x5M006081	ORTHO04x5M007269	1.7e-08	61.2	74	41.9
Ma00_g02820	Musa acuminata	HOM04x5M006081	ORTHO04x5M007269	6.0e-06	52.8	40	62.5

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment