Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Aco008185	Ananas comosus	HOM04x5M004298	ORTHO04x5M005136	9.4e-64	245.4	125	100.0
Aco026062	Ananas comosus	HOM04x5M004298	ORTHO04x5M005136	9.4e-64	245.4	125	100.0
Bradi1g30750	Brachypodium distachyon	HOM04x5M004298	ORTHO04x5M005136	7.1e-11	69.7	114	43.0
PH01000061G1340	Phyllostachys edulis	HOM04x5M004298	ORTHO04x5M005136	7.1e-11	69.7	120	40.8
LOC_Os02g08540	Oryza sativa ssp. japonica	HOM04x5M004298	ORTHO04x5M005136	3.5e-10	67.4	127	40.2
TraesCS6B02G174000	Triticum aestivum	HOM04x5M004298	ORTHO04x5M005136	4.6e-10	67.0	114	38.6
TRITD6Bv1G064120	Triticum turgidum	HOM04x5M004298	ORTHO04x5M005136	4.6e-10	67.0	114	38.6
HORVU6Hr1G028660	Hordeum vulgare	HOM04x5M004298	ORTHO04x5M005136	2.3e-09	64.7	123	39.0
Seita.4G199100	Setaria italica	HOM04x5M004298	ORTHO04x5M005136	2.3e-09	64.7	109	39.4
Misin08G066600	Miscanthus sinensis	HOM04x5M004298	ORTHO04x5M005136	3.9e-09	63.9	122	40.2
OsR498G0203102700.01	Oryza sativa ssp. indica	HOM04x5M004298	ORTHO04x5M005136	5.1e-09	63.5	127	38.6
PH01001802G0210	Phyllostachys edulis	HOM04x5M004298	ORTHO04x5M005136	5.1e-09	63.5	120	38.3
PH01000043G1650	Phyllostachys edulis	HOM04x5M004298	ORTHO04x5M005136	5.1e-09	63.5	121	39.7
Sspon.04G0016780-3C	Saccharum spontaneum	HOM04x5M004298	ORTHO04x5M005136	5.1e-09	63.5	120	38.3
Pgl_GLEAN_10005236	Cenchrus americanus	HOM04x5M004298	ORTHO04x5M005136	1.1e-08	62.4	96	43.8
OB02G15580	Oryza brachyantha	HOM04x5M004298	ORTHO04x5M005136	1.1e-08	62.4	124	37.1
Sspon.04G0016780-2B	Saccharum spontaneum	HOM04x5M004298	ORTHO04x5M005136	1.9e-08	61.6	117	38.5
Zm00001d046564	Zea mays B73	HOM04x5M004298	ORTHO04x5M005136	1.9e-08	61.6	101	43.6
Zjn_sc00069.1.g00440.1.sm.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M004298	ORTHO04x5M005136	2.5e-08	61.2	100	42.0
Pgl_GLEAN_10016702	Cenchrus americanus	HOM04x5M004298	ORTHO04x5M005136	4.3e-08	60.5	125	39.2
Misin07G064900	Miscanthus sinensis	HOM04x5M004298	ORTHO04x5M005136	7.3e-08	59.7	120	37.5
Zm00001d036736	Zea mays B73	HOM04x5M004298	ORTHO04x5M005136	7.3e-08	59.7	101	42.6
Sobic.010G207600	Sorghum bicolor	HOM04x5M004298	ORTHO04x5M005136	9.6e-08	59.3	104	42.3
Sspon.04G0016780-1A	Saccharum spontaneum	HOM04x5M004298	ORTHO04x5M005136	1.3e-07	58.9	117	37.6
Misin18G204500	Miscanthus sinensis	HOM04x5M004298	ORTHO04x5M005136	1.6e-07	58.5	106	39.6
Oropetium_20150105_18405	Oropetium thomaeum	HOM04x5M004298	ORTHO04x5M005136	1.6e-07	58.5	121	38.0
Misin19G201700	Miscanthus sinensis	HOM04x5M004298	ORTHO04x5M005136	2.1e-07	58.2	111	40.5
Zm00007a00031941	Zea mays B104	HOM04x5M004298	ORTHO04x5M005136	2.8e-07	57.8	97	42.3
Sspon.04G0016780-4P	Saccharum spontaneum	HOM04x5M004298	ORTHO04x5M005136	1.1e-06	55.8	98	41.8
TraesCS7B02G422600	Triticum aestivum	HOM04x5M004298	ORTHO04x5M005136	1.8e-06	55.1	119	36.1
Zm00001d015546	Zea mays B73	HOM04x5M004298	ORTHO04x5M005136	4.0e-06	53.9	109	36.7
Zm00007a00006359	Zea mays B104	HOM04x5M004298	ORTHO04x5M005136	4.0e-06	53.9	109	36.7
Zm00008a021143	Zea mays PH207	HOM04x5M004298	ORTHO04x5M005136	4.0e-06	53.9	109	36.7
TraesCS6A02G145600	Triticum aestivum	HOM04x5M004298	ORTHO04x5M005136	5.3e-06	53.5	114	36.0
TRITD6Av1G051950	Triticum turgidum	HOM04x5M004298	ORTHO04x5M005136	5.3e-06	53.5	114	36.0
TraesCS6D02G134900	Triticum aestivum	HOM04x5M004298	ORTHO04x5M005136	6.9e-06	53.1	114	36.0
LOC_Os06g43870	Oryza sativa ssp. japonica	HOM04x5M004298	ORTHO04x5M005136	9.0e-06	52.8	94	37.2
Sspon.04G0016780-2P	Saccharum spontaneum	HOM04x5M004298	ORTHO04x5M005136	9.0e-06	52.8	105	38.1
Zm00008a024669	Zea mays PH207	HOM04x5M004298	ORTHO04x5M005136	9.0e-06	52.8	95	42.1

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment