Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Aco016353	Ananas comosus	HOM04x5M005118	ORTHO04x5M006044	2.4e-200	700.7	372	100.0
CALSI_Maker00015068	Calamus simplicifolius	HOM04x5M005118	ORTHO04x5M006044	1.2e-42	176.8	341	40.8
p5.00_sc00103_p0112	Elaeis guineensis	HOM04x5M005118	ORTHO04x5M006044	1.8e-41	172.9	295	42.7
Ma03_g14810	Musa acuminata	HOM04x5M005118	ORTHO04x5M006044	2.6e-37	159.1	294	41.2
CALSI_Maker00015332	Calamus simplicifolius	HOM04x5M005118	ORTHO04x5M006044	1.3e-36	156.8	216	47.2
ASH_gene7324	Apostasia shenzhenica	HOM04x5M005118	ORTHO04x5M006044	1.1e-35	153.7	348	36.2
Oropetium_20150105_09348	Oropetium thomaeum	HOM04x5M005118	ORTHO04x5M006044	2.7e-34	149.1	316	37.7
p5.00_sc00153_p0034	Elaeis guineensis	HOM04x5M005118	ORTHO04x5M006044	8.0e-34	147.5	489	31.5
Seita.9G207400	Setaria italica	HOM04x5M005118	ORTHO04x5M006044	8.0e-34	147.5	227	41.9
Bradi3g29854	Brachypodium distachyon	HOM04x5M005118	ORTHO04x5M006044	1.0e-33	147.1	318	39.3
TraesCS1D02G150900	Triticum aestivum	HOM04x5M005118	ORTHO04x5M006044	1.8e-33	146.4	370	36.2
TraesCS1B02G181200	Triticum aestivum	HOM04x5M005118	ORTHO04x5M006044	2.3e-33	146.0	370	36.2
TraesCS1D02G161400	Triticum aestivum	HOM04x5M005118	ORTHO04x5M006044	3.0e-33	145.6	370	36.2
LP007584	Lolium perenne	HOM04x5M005118	ORTHO04x5M006044	6.8e-33	144.4	296	39.5
TRITD1Bv1G106490	Triticum turgidum	HOM04x5M005118	ORTHO04x5M006044	6.8e-33	144.4	370	35.9
TRITD1Av1G106030	Triticum turgidum	HOM04x5M005118	ORTHO04x5M006044	8.8e-33	144.1	376	36.7
TraesCS1A02G164400	Triticum aestivum	HOM04x5M005118	ORTHO04x5M006044	1.2e-32	143.7	376	36.7
HORVU1Hr1G061690	Hordeum vulgare	HOM04x5M005118	ORTHO04x5M006044	1.5e-32	143.3	376	35.1
LOC_Os10g35190	Oryza sativa ssp. japonica	HOM04x5M005118	ORTHO04x5M006044	4.4e-32	141.7	241	42.3
PH01000226G0840	Phyllostachys edulis	HOM04x5M005118	ORTHO04x5M006044	9.7e-32	140.6	264	40.2
Zm00001d013962	Zea mays B73	HOM04x5M005118	ORTHO04x5M006044	2.8e-31	139.0	295	38.3
Zm00007a00036589	Zea mays B104	HOM04x5M005118	ORTHO04x5M006044	2.8e-31	139.0	295	38.3
Zm00008a019959	Zea mays PH207	HOM04x5M005118	ORTHO04x5M006044	2.8e-31	139.0	295	38.3
Pgl_GLEAN_10028713	Cenchrus americanus	HOM04x5M005118	ORTHO04x5M006044	4.8e-31	138.3	216	41.7
PH01002302G0220	Phyllostachys edulis	HOM04x5M005118	ORTHO04x5M006044	1.1e-30	137.1	154	50.6
Sspon.01G0020130-3C	Saccharum spontaneum	HOM04x5M005118	ORTHO04x5M006044	1.1e-30	137.1	356	35.7
Sspon.01G0020130-4D	Saccharum spontaneum	HOM04x5M005118	ORTHO04x5M006044	1.1e-30	137.1	356	35.7
PEQU_10805	Phalaenopsis equestris	HOM04x5M005118	ORTHO04x5M006044	1.4e-30	136.7	357	35.0
Misin02G184500	Miscanthus sinensis	HOM04x5M005118	ORTHO04x5M006044	9.1e-30	134.0	295	38.6
Sspon.01G0020130-1A	Saccharum spontaneum	HOM04x5M005118	ORTHO04x5M006044	2.0e-29	132.9	310	36.8
Sobic.001G207500	Sorghum bicolor	HOM04x5M005118	ORTHO04x5M006044	4.5e-29	131.7	241	40.7
Zjn_sc01005.1.g00010.1.sm.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M005118	ORTHO04x5M006044	5.9e-29	131.3	215	41.9
Aco009279	Ananas comosus	HOM04x5M005118	ORTHO04x5M006044	1.7e-28	129.8	306	43.8
Zm00008a004087	Zea mays PH207	HOM04x5M005118	ORTHO04x5M006044	3.8e-28	128.6	330	37.6
Potri.006G095600	Populus trichocarpa	HOM04x5M005118	ORTHO04x5M006044	5.0e-28	128.3	297	35.4
Sspon.01G0020130-2B	Saccharum spontaneum	HOM04x5M005118	ORTHO04x5M006044	1.1e-27	127.1	400	33.8
GSVIVG01034021001	Vitis vinifera	HOM04x5M005118	ORTHO04x5M006044	1.9e-27	126.3	333	34.2
Spipo16G0033700	Spirodela polyrhiza	HOM04x5M005118	ORTHO04x5M006044	9.4e-27	124.0	255	39.2
Zm00001d032600	Zea mays B73	HOM04x5M005118	ORTHO04x5M006044	3.6e-26	122.1	242	41.3
Zm00007a00004807	Zea mays B104	HOM04x5M005118	ORTHO04x5M006044	3.6e-26	122.1	242	41.3
Solyc09g013120.2	Solanum lycopersicum	HOM04x5M005118	ORTHO04x5M006044	3.0e-25	119.0	319	36.1
Ma01_g10950	Musa acuminata	HOM04x5M005118	ORTHO04x5M006044	4.8e-23	111.7	324	34.3
Zosma37g01170	Zostera marina	HOM04x5M005118	ORTHO04x5M006044	1.8e-22	109.8	276	35.1
OsR498G1018972500.01	Oryza sativa ssp. indica	HOM04x5M005118	ORTHO04x5M006044	9.1e-22	107.5	149	45.0
OB10G21490	Oryza brachyantha	HOM04x5M005118	ORTHO04x5M006044	1.6e-21	106.7	201	41.3
AT5G01160	Arabidopsis thaliana	HOM04x5M005118	ORTHO04x5M006044	3.3e-19	99.0	362	29.6
evm.TU.AsparagusV1_04.3454.V1.1	Asparagus officinalis	HOM04x5M005118	ORTHO04x5M006044	2.8e-18	95.9	71	57.7
ATR0605G041	Amborella trichopoda	HOM04x5M005118	ORTHO04x5M006044	5.4e-14	81.6	315	30.2
Misin01G192500	Miscanthus sinensis	HOM04x5M005118	ORTHO04x5M006044	2.0e-13	79.7	253	33.6
PAB00022467	Picea abies	HOM04x5M005118	ORTHO04x5M006044	4.5e-13	78.6	217	33.2
gene31868	Selaginella moellendorffii	HOM04x5M005118	ORTHO04x5M006044	7.5e-08	61.2	78	42.3
gene29900	Selaginella moellendorffii	HOM04x5M005118	ORTHO04x5M006044	7.5e-08	61.2	78	42.3
Pp3c20_10060	Physcomitrium patens	HOM04x5M005118	ORTHO04x5M006044	1.7e-07	60.1	81	38.3
Mapoly0068s0057	Marchantia polymorpha	HOM04x5M005118	ORTHO04x5M006044	2.9e-07	59.3	48	45.8
Pp3c23_4130	Physcomitrium patens	HOM04x5M005118	ORTHO04x5M006044	3.7e-07	58.9	50	44.0

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment