Monocots PLAZA 4.5 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Aco016073	Ananas comosus	HOM04x5M005640	ORTHO04x5M006896	4.8e-72	273.5	147	100.0
Sobic.005G108801	Sorghum bicolor	HOM04x5M005640	ORTHO04x5M006896	2.0e-38	161.8	143	64.3
Bradi4g19110	Brachypodium distachyon	HOM04x5M005640	ORTHO04x5M006896	7.7e-38	159.8	139	62.6
Zm00001d049193	Zea mays B73	HOM04x5M005640	ORTHO04x5M006896	1.3e-37	159.1	142	62.7
LP026082	Lolium perenne	HOM04x5M005640	ORTHO04x5M006896	2.9e-37	157.9	142	62.0
TRITD4Bv1G092540	Triticum turgidum	HOM04x5M005640	ORTHO04x5M006896	1.4e-36	155.6	142	62.0
Pgl_GLEAN_10038078	Cenchrus americanus	HOM04x5M005640	ORTHO04x5M006896	2.5e-36	154.8	149	59.7
PH01000837G0150	Phyllostachys edulis	HOM04x5M005640	ORTHO04x5M006896	3.2e-36	154.5	141	61.0
Seita.8G121000	Setaria italica	HOM04x5M005640	ORTHO04x5M006896	9.4e-36	152.9	139	61.9
TraesCS4A02G157000	Triticum aestivum	HOM04x5M005640	ORTHO04x5M006896	9.4e-36	152.9	142	60.6
TRITD4Av1G105650	Triticum turgidum	HOM04x5M005640	ORTHO04x5M006896	9.4e-36	152.9	142	60.6
LOC_Os12g25640	Oryza sativa ssp. japonica	HOM04x5M005640	ORTHO04x5M006896	1.2e-35	152.5	144	60.4
OsR498G1221505100.01	Oryza sativa ssp. indica	HOM04x5M005640	ORTHO04x5M006896	1.2e-35	152.5	144	60.4
Misin10G093600	Miscanthus sinensis	HOM04x5M005640	ORTHO04x5M006896	1.6e-35	152.1	140	63.6
Seita.3G299700	Setaria italica	HOM04x5M005640	ORTHO04x5M006896	4.7e-35	150.6	145	57.9
OB12G19340	Oryza brachyantha	HOM04x5M005640	ORTHO04x5M006896	6.1e-35	150.2	141	60.3
ASH_gene19865	Apostasia shenzhenica	HOM04x5M005640	ORTHO04x5M006896	3.0e-34	147.9	142	62.0
CALSI_Maker00013202	Calamus simplicifolius	HOM04x5M005640	ORTHO04x5M006896	1.1e-33	146.0	140	61.4
LOC_Os11g29340	Oryza sativa ssp. japonica	HOM04x5M005640	ORTHO04x5M006896	2.6e-33	144.8	148	57.4
OsR498G1120151100.01	Oryza sativa ssp. indica	HOM04x5M005640	ORTHO04x5M006896	2.6e-33	144.8	148	57.4
Zm00008a015305	Zea mays PH207	HOM04x5M005640	ORTHO04x5M006896	2.8e-32	141.4	139	59.0
p5.00_sc00091_p0052	Elaeis guineensis	HOM04x5M005640	ORTHO04x5M006896	4.1e-31	137.5	141	57.4
Misin09G120200	Miscanthus sinensis	HOM04x5M005640	ORTHO04x5M006896	5.3e-31	137.1	167	53.3
Ma10_g07040	Musa acuminata	HOM04x5M005640	ORTHO04x5M006896	9.1e-31	136.3	143	56.6
CALSI_Maker00027408	Calamus simplicifolius	HOM04x5M005640	ORTHO04x5M006896	7.7e-30	133.3	144	55.6
OB11G20740	Oryza brachyantha	HOM04x5M005640	ORTHO04x5M006896	2.2e-29	131.7	146	53.4
Potri.015G094600	Populus trichocarpa	HOM04x5M005640	ORTHO04x5M006896	1.5e-28	129.0	148	55.4
Potri.012G096900	Populus trichocarpa	HOM04x5M005640	ORTHO04x5M006896	2.3e-26	121.7	144	53.5
AT5G63460	Arabidopsis thaliana	HOM04x5M005640	ORTHO04x5M006896	3.3e-25	117.9	139	54.7
PEQU_08091	Phalaenopsis equestris	HOM04x5M005640	ORTHO04x5M006896	3.3e-25	117.9	108	60.2
evm.TU.AsparagusV1_04.1449.V1.1	Asparagus officinalis	HOM04x5M005640	ORTHO04x5M006896	5.7e-25	117.1	117	55.6
TraesCS4B02G153400	Triticum aestivum	HOM04x5M005640	ORTHO04x5M006896	2.2e-24	115.2	142	52.1
TraesCS4D02G151000	Triticum aestivum	HOM04x5M005640	ORTHO04x5M006896	4.8e-24	114.0	142	53.5
CALSI_Maker00044827	Calamus simplicifolius	HOM04x5M005640	ORTHO04x5M006896	8.2e-24	113.2	112	57.1
Solyc03g111270.2	Solanum lycopersicum	HOM04x5M005640	ORTHO04x5M006896	1.2e-22	109.4	144	47.9
Zosma208g00110	Zostera marina	HOM04x5M005640	ORTHO04x5M006896	4.5e-22	107.5	138	50.7
Oropetium_20150105_26651	Oropetium thomaeum	HOM04x5M005640	ORTHO04x5M006896	8.5e-21	103.2	105	61.9
Spipo13G0026800	Spirodela polyrhiza	HOM04x5M005640	ORTHO04x5M006896	1.1e-20	102.8	69	68.1
Zm00007a00034132	Zea mays B104	HOM04x5M005640	ORTHO04x5M006896	1.5e-20	102.4	78	66.7
Ma10_g29090	Musa acuminata	HOM04x5M005640	ORTHO04x5M006896	2.5e-20	101.7	143	45.5
GSVIVG01008533001	Vitis vinifera	HOM04x5M005640	ORTHO04x5M006896	3.2e-20	101.3	146	47.3
PEQU_32717	Phalaenopsis equestris	HOM04x5M005640	ORTHO04x5M006896	3.6e-19	97.8	124	51.6
Pp3c8_10310	Physcomitrium patens	HOM04x5M005640	ORTHO04x5M006896	2.3e-18	95.1	148	41.2
PH01000624G0140	Phyllostachys edulis	HOM04x5M005640	ORTHO04x5M006896	6.8e-18	93.6	116	48.3
ATR0561G036	Amborella trichopoda	HOM04x5M005640	ORTHO04x5M006896	2.0e-17	92.0	65	64.6
Mapoly0121s0035	Marchantia polymorpha	HOM04x5M005640	ORTHO04x5M006896	1.7e-16	89.0	111	47.7
gene30364	Selaginella moellendorffii	HOM04x5M005640	ORTHO04x5M006896	1.2e-14	82.8	133	43.6
p5.00_sc00125_p0035	Elaeis guineensis	HOM04x5M005640	ORTHO04x5M006896	6.5e-13	77.0	124	46.8
Zjn_sc00061.1.g00320.1.sm.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M005640	ORTHO04x5M006896	3.6e-11	71.2	100	46.0
Oropetium_20150105_21436	Oropetium thomaeum	HOM04x5M005640	ORTHO04x5M006896	2.0e-09	65.5	39	74.4
Zjn_sc00010.1.g04790.1.sm.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M005640	ORTHO04x5M006896	2.7e-06	55.1	40	57.5

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment