Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Aco011963	Ananas comosus	HOM04x5M000770	ORTHO04x5M001157	1.3e-27	126.3	74	100.0
Ma08_g14000	Musa acuminata	HOM04x5M000770	ORTHO04x5M001157	2.7e-09	65.5	60	61.7
Aco011822	Ananas comosus	HOM04x5M000770	ORTHO04x5M002717	3.5e-09	65.1	58	62.1
Ma11_g01220	Musa acuminata	HOM04x5M000770	ORTHO04x5M001157	7.8e-09	63.9	59	57.6
CALSI_Maker00043432	Calamus simplicifolius	HOM04x5M000770	ORTHO04x5M001157	1.3e-08	63.2	58	53.4
Sobic.001G516200	Sorghum bicolor	HOM04x5M000770	ORTHO04x5M002717	1.7e-08	62.8	62	53.2
Zm00001d027522	Zea mays B73	HOM04x5M000770	ORTHO04x5M002717	2.3e-08	62.4	76	46.1
Zm00007a00019474	Zea mays B104	HOM04x5M000770	ORTHO04x5M002717	2.3e-08	62.4	76	46.1
p5.00_sc00014_p0148	Elaeis guineensis	HOM04x5M000770	ORTHO04x5M001157	2.9e-08	62.0	57	52.6
Seita.9G551400	Setaria italica	HOM04x5M000770	ORTHO04x5M002717	2.9e-08	62.0	59	52.5
p5.00_sc00013_p0226	Elaeis guineensis	HOM04x5M000770	ORTHO04x5M001157	6.6e-08	60.8	58	51.7
PH01001177G0440	Phyllostachys edulis	HOM04x5M000770	ORTHO04x5M002717	6.6e-08	60.8	58	51.7
Seita.1G267400	Setaria italica	HOM04x5M000770	ORTHO04x5M002717	6.6e-08	60.8	55	56.4
LP011550	Lolium perenne	HOM04x5M000770	ORTHO04x5M002717	8.6e-08	60.5	56	57.1
Ma05_g11360	Musa acuminata	HOM04x5M000770	ORTHO04x5M001157	8.6e-08	60.5	59	61.0
TraesCS4B02G327500	Triticum aestivum	HOM04x5M000770	ORTHO04x5M002717	8.6e-08	60.5	63	49.2
TRITD4Bv1G185960	Triticum turgidum	HOM04x5M000770	ORTHO04x5M002717	8.6e-08	60.5	63	49.2
p5.00_sc00183_p0011	Elaeis guineensis	HOM04x5M000770	ORTHO04x5M001157	1.1e-07	60.1	57	50.9
Sobic.004G286400	Sorghum bicolor	HOM04x5M000770	ORTHO04x5M002717	1.1e-07	60.1	55	56.4
Sspon.01G0001900-3C	Saccharum spontaneum	HOM04x5M000770	ORTHO04x5M002717	1.1e-07	60.1	63	55.6
Sspon.01G0001900-4D	Saccharum spontaneum	HOM04x5M000770	ORTHO04x5M002717	1.1e-07	60.1	63	55.6
Sspon.01G0001900-1A	Saccharum spontaneum	HOM04x5M000770	ORTHO04x5M002717	1.5e-07	59.7	63	55.6
Sspon.01G0001900-2B	Saccharum spontaneum	HOM04x5M000770	ORTHO04x5M002717	1.5e-07	59.7	63	55.6
Sspon.04G0006510-2B	Saccharum spontaneum	HOM04x5M000770	ORTHO04x5M002717	1.5e-07	59.7	55	56.4
Sspon.04G0006510-1A	Saccharum spontaneum	HOM04x5M000770	ORTHO04x5M002717	1.5e-07	59.7	55	56.4
Misin01G494600	Miscanthus sinensis	HOM04x5M000770	ORTHO04x5M002717	1.9e-07	59.3	63	55.6
TraesCS4D02G324600	Triticum aestivum	HOM04x5M000770	ORTHO04x5M002717	1.9e-07	59.3	62	48.4
TraesCS5A02G499700	Triticum aestivum	HOM04x5M000770	ORTHO04x5M002717	1.9e-07	59.3	62	48.4
Ma07_g18750	Musa acuminata	HOM04x5M000770	ORTHO04x5M001157	3.3e-07	58.5	55	54.5
Misin08G235200	Miscanthus sinensis	HOM04x5M000770	ORTHO04x5M002717	3.3e-07	58.5	55	54.5
TRITD5Av1G240160	Triticum turgidum	HOM04x5M000770	ORTHO04x5M002717	4.3e-07	58.2	62	46.8
Zm00008a000246	Zea mays PH207	HOM04x5M000770	ORTHO04x5M002717	4.3e-07	58.2	68	47.1
Seita.7G198700	Setaria italica	HOM04x5M000770	ORTHO04x5M002717	5.6e-07	57.8	55	54.5
Bradi3g51182	Brachypodium distachyon	HOM04x5M000770	ORTHO04x5M002717	7.3e-07	57.4	56	51.8
Oropetium_20150105_22653	Oropetium thomaeum	HOM04x5M000770	ORTHO04x5M002717	7.3e-07	57.4	64	50.0
Seita.9G339500	Setaria italica	HOM04x5M000770	ORTHO04x5M002717	9.5e-07	57.0	57	49.1
LOC_Os02g44880	Oryza sativa ssp. japonica	HOM04x5M000770	ORTHO04x5M002717	1.6e-06	56.2	50	58.0
OsR498G0204490700.01	Oryza sativa ssp. indica	HOM04x5M000770	ORTHO04x5M002717	1.6e-06	56.2	50	58.0
Sobic.001G310900	Sorghum bicolor	HOM04x5M000770	ORTHO04x5M002717	1.6e-06	56.2	57	50.9
Zjn_sc00002.1.g15490.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M000770	ORTHO04x5M002717	1.6e-06	56.2	60	46.7
CALSI_Maker00000386	Calamus simplicifolius	HOM04x5M000770	ORTHO04x5M001157	2.1e-06	55.8	58	50.0
LOC_Os04g47450	Oryza sativa ssp. japonica	HOM04x5M000770	ORTHO04x5M002717	2.1e-06	55.8	55	50.9
TraesCS6A02G253500	Triticum aestivum	HOM04x5M000770	ORTHO04x5M002717	2.1e-06	55.8	55	50.9
TraesCS6B02G271900	Triticum aestivum	HOM04x5M000770	ORTHO04x5M002717	2.1e-06	55.8	55	50.9
TraesCS6D02G235000	Triticum aestivum	HOM04x5M000770	ORTHO04x5M002717	2.1e-06	55.8	55	50.9
TRITD6Av1G161330	Triticum turgidum	HOM04x5M000770	ORTHO04x5M002717	2.1e-06	55.8	55	50.9
TRITD6Bv1G147550	Triticum turgidum	HOM04x5M000770	ORTHO04x5M002717	2.1e-06	55.8	55	50.9
Misin02G505000	Miscanthus sinensis	HOM04x5M000770	ORTHO04x5M002717	2.8e-06	55.5	65	47.7
LP019133	Lolium perenne	HOM04x5M000770	ORTHO04x5M002717	3.6e-06	55.1	63	47.6
Misin01G293900	Miscanthus sinensis	HOM04x5M000770	ORTHO04x5M002717	3.6e-06	55.1	57	49.1
Sspon.01G0013760-1A	Saccharum spontaneum	HOM04x5M000770	ORTHO04x5M002717	3.6e-06	55.1	57	49.1
Sspon.01G0013760-2C	Saccharum spontaneum	HOM04x5M000770	ORTHO04x5M002717	3.6e-06	55.1	57	49.1
Sspon.01G0013760-3D	Saccharum spontaneum	HOM04x5M000770	ORTHO04x5M002717	3.6e-06	55.1	57	49.1
Misin02G282900	Miscanthus sinensis	HOM04x5M000770	ORTHO04x5M002717	6.2e-06	54.3	57	47.4
LOC_Os03g04040	Oryza sativa ssp. japonica	HOM04x5M000770	ORTHO04x5M002717	6.2e-06	54.3	58	48.3
OsR498G0305178700.01	Oryza sativa ssp. indica	HOM04x5M000770	ORTHO04x5M002717	6.2e-06	54.3	58	48.3
PEQU_02024	Phalaenopsis equestris	HOM04x5M000770	ORTHO04x5M001157	8.0e-06	53.9	58	46.6

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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