Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Aco005875	Ananas comosus	HOM04x5M035167	ORTHO04x5M001613	3.2e-72	273.5	123	100.0
Aco005876	Ananas comosus	HOM04x5M035167	ORTHO04x5M001613	4.0e-51	203.4	102	92.2
p5.00_sc00028_p0063	Elaeis guineensis	HOM04x5M001765	ORTHO04x5M001613	1.7e-17	91.7	100	39.0
p5.00_sc00029_p0034	Elaeis guineensis	HOM04x5M001765	ORTHO04x5M001613	1.0e-14	82.4	112	36.6
p5.00_sc00029_p0031	Elaeis guineensis	HOM04x5M001765	ORTHO04x5M001613	8.8e-14	79.3	116	37.1
p5.00_sc00029_p0030	Elaeis guineensis	HOM04x5M001765	ORTHO04x5M001613	1.2e-13	79.0	113	34.5
Ma08_g21500	Musa acuminata	HOM04x5M001765	ORTHO04x5M001613	2.0e-13	78.2	76	43.4
p5.00_sc00362_p0006	Elaeis guineensis	HOM04x5M001765	ORTHO04x5M001613	2.6e-13	77.8	115	35.7
p5.00_sc00029_p0032	Elaeis guineensis	HOM04x5M001765	ORTHO04x5M001613	3.4e-13	77.4	123	34.1
p5.00_sc21486_p0001	Elaeis guineensis	HOM04x5M001765	ORTHO04x5M001613	2.2e-12	74.7	123	33.3
Aco014152	Ananas comosus	HOM04x5M001765	ORTHO04x5M001613	8.3e-12	72.8	69	44.9
p5.00_sc00029_p0033	Elaeis guineensis	HOM04x5M001765	ORTHO04x5M001613	1.4e-11	72.0	121	33.9
CALSI_Maker00021216	Calamus simplicifolius	HOM04x5M001765	ORTHO04x5M001613	7.0e-11	69.7	85	37.6
CALSI_Maker00041658	Calamus simplicifolius	HOM04x5M001765	ORTHO04x5M001613	7.0e-11	69.7	85	37.6
CALSI_Maker00015073	Calamus simplicifolius	HOM04x5M001765	ORTHO04x5M001613	7.0e-11	69.7	85	37.6
p5.00_sc00050_p0155	Elaeis guineensis	HOM04x5M001765	ORTHO04x5M001613	1.0e-09	65.9	61	45.9
LOC_Os01g03680	Oryza sativa ssp. japonica	HOM04x5M001861	ORTHO04x5M001964	1.3e-09	65.5	74	44.6
CALSI_Maker00049279	Calamus simplicifolius	HOM04x5M001765	ORTHO04x5M001613	2.2e-09	64.7	113	32.7
MisinT230000	Miscanthus sinensis	HOM04x5M001765	ORTHO04x5M001613	1.1e-08	62.4	74	41.9
Zm00007a00020329	Zea mays B104	HOM04x5M001765	ORTHO04x5M001613	1.1e-08	62.4	68	41.2
Zm00008a014898	Zea mays PH207	HOM04x5M001765	ORTHO04x5M001613	1.5e-08	62.0	68	41.2
Sobic.005G216000	Sorghum bicolor	HOM04x5M001765	ORTHO04x5M001613	1.9e-08	61.6	74	39.2
Misin09G178600	Miscanthus sinensis	HOM04x5M001765	ORTHO04x5M001613	3.2e-08	60.8	74	41.9
Zm00008a038670	Zea mays PH207	HOM04x5M001765	ORTHO04x5M001613	4.2e-08	60.5	68	39.7
Sobic.005G215900	Sorghum bicolor	HOM04x5M001765	ORTHO04x5M001613	1.6e-07	58.5	74	40.5
Zm00001d035386	Zea mays B73	HOM04x5M001765	ORTHO04x5M001613	1.6e-07	58.5	74	37.8
Zm00007a00025137	Zea mays B104	HOM04x5M001765	ORTHO04x5M001613	1.6e-07	58.5	74	37.8
Sobic.005G215500	Sorghum bicolor	HOM04x5M001765	ORTHO04x5M001613	2.1e-07	58.2	75	38.7
MisinT230100	Miscanthus sinensis	HOM04x5M001765	ORTHO04x5M001613	6.1e-07	56.6	74	35.1
Zm00001d048660	Zea mays B73	HOM04x5M001765	ORTHO04x5M001613	6.1e-07	56.6	67	37.3
Zm00007a00042432	Zea mays B104	HOM04x5M001765	ORTHO04x5M001613	6.1e-07	56.6	67	37.3
Zm00007a00042429	Zea mays B104	HOM04x5M001765	ORTHO04x5M001613	6.1e-07	56.6	67	37.3
Zm00008a014903	Zea mays PH207	HOM04x5M001765	ORTHO04x5M001613	6.1e-07	56.6	67	37.3
Zm00001d048656	Zea mays B73	HOM04x5M001765	ORTHO04x5M001613	8.0e-07	56.2	74	35.1
Zm00007a00020328	Zea mays B104	HOM04x5M001765	ORTHO04x5M001613	8.0e-07	56.2	74	35.1
Zm00008a014897	Zea mays PH207	HOM04x5M001765	ORTHO04x5M001613	8.0e-07	56.2	74	35.1
Sspon.06G0027370-1B	Saccharum spontaneum	HOM04x5M001765	ORTHO04x5M001613	1.8e-06	55.1	68	36.8
Ma04_g24980	Musa acuminata	HOM04x5M019343	ORTHO04x5M020879	3.0e-06	54.3	46	50.0
Sspon.06G0027370-3D	Saccharum spontaneum	HOM04x5M001765	ORTHO04x5M001613	6.8e-06	53.1	68	35.3
Sspon.06G0027370-2C	Saccharum spontaneum	HOM04x5M001765	ORTHO04x5M001613	8.8e-06	52.8	67	35.8

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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