Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
ATR0824G019	Amborella trichopoda	HOM04x5M005382	ORTHO04x5M006527	0.0e+00	1292.3	735	100.0
GSVIVG01007574001	Vitis vinifera	HOM04x5M005382	ORTHO04x5M006527	1.8e-194	682.2	648	57.6
Solyc06g071850.2	Solanum lycopersicum	HOM04x5M005382	ORTHO04x5M006527	4.1e-191	671.0	659	56.4
Aco024203	Ananas comosus	HOM04x5M005382	ORTHO04x5M006527	3.8e-189	664.5	596	59.6
Ma08_g08710	Musa acuminata	HOM04x5M005382	ORTHO04x5M006527	1.2e-185	652.9	630	56.0
evm.TU.AsparagusV1_04.597.V1.1	Asparagus officinalis	HOM04x5M005382	ORTHO04x5M006527	8.6e-181	636.7	636	55.5
Sobic.003G394300	Sorghum bicolor	HOM04x5M005382	ORTHO04x5M006527	1.1e-175	619.8	635	53.9
Misin06G362700	Miscanthus sinensis	HOM04x5M005382	ORTHO04x5M006527	4.6e-174	614.4	634	53.6
Zm00001d042450	Zea mays B73	HOM04x5M005382	ORTHO04x5M006527	1.7e-173	612.5	632	53.5
Zm00007a00017129	Zea mays B104	HOM04x5M005382	ORTHO04x5M006527	1.7e-173	612.5	632	53.5
Potri.012G092000	Populus trichocarpa	HOM04x5M005382	ORTHO04x5M006527	2.8e-171	605.1	647	58.1
PEQU_32184	Phalaenopsis equestris	HOM04x5M005382	ORTHO04x5M006527	1.1e-167	593.2	582	54.6
Seita.5G420200	Setaria italica	HOM04x5M005382	ORTHO04x5M006527	6.0e-166	587.4	636	52.2
Pgl_GLEAN_10010471	Cenchrus americanus	HOM04x5M005382	ORTHO04x5M006527	1.2e-161	573.2	597	53.1
CALSI_Maker00005234	Calamus simplicifolius	HOM04x5M005382	ORTHO04x5M006527	9.2e-159	563.5	596	53.7
Bradi2g58077	Brachypodium distachyon	HOM04x5M005382	ORTHO04x5M006527	1.2e-158	563.1	638	50.2
LP034953	Lolium perenne	HOM04x5M005382	ORTHO04x5M006527	4.6e-158	561.2	589	52.6
TraesCS3D02G383400	Triticum aestivum	HOM04x5M005382	ORTHO04x5M006527	1.5e-153	546.2	630	49.8
TraesCS3A02G390800	Triticum aestivum	HOM04x5M005382	ORTHO04x5M006527	2.2e-152	542.3	639	49.1
TraesCS3B02G422600	Triticum aestivum	HOM04x5M005382	ORTHO04x5M006527	4.9e-152	541.2	637	48.2
Zm00008a013007	Zea mays PH207	HOM04x5M005382	ORTHO04x5M006527	1.9e-151	539.3	582	51.2
HORVU3Hr1G088460	Hordeum vulgare	HOM04x5M005382	ORTHO04x5M006527	7.1e-151	537.3	639	48.0
OsR498G0102541400.01	Oryza sativa ssp. indica	HOM04x5M005382	ORTHO04x5M006527	1.0e-149	533.5	590	51.4
TRITD3Av1G230650	Triticum turgidum	HOM04x5M005382	ORTHO04x5M006527	6.6e-149	530.8	602	49.5
HORVU3Hr1G088480	Hordeum vulgare	HOM04x5M005382	ORTHO04x5M006527	4.7e-147	524.6	586	50.3
OB01G49790	Oryza brachyantha	HOM04x5M005382	ORTHO04x5M006527	4.7e-147	524.6	591	50.8
TRITD3Bv1G217010	Triticum turgidum	HOM04x5M005382	ORTHO04x5M006527	1.1e-146	523.5	639	47.3
AT5G63200	Arabidopsis thaliana	HOM04x5M005382	ORTHO04x5M006527	8.9e-146	520.4	631	47.5
p5.00_sc00130_p0062	Elaeis guineensis	HOM04x5M005382	ORTHO04x5M006527	5.8e-145	517.7	630	49.0
Zosma79g00200	Zostera marina	HOM04x5M005382	ORTHO04x5M006527	9.9e-145	516.9	585	50.3
gene5094	Selaginella moellendorffii	HOM04x5M005382	ORTHO04x5M006527	1.3e-144	516.5	564	51.2
gene7444	Selaginella moellendorffii	HOM04x5M005382	ORTHO04x5M006527	1.3e-144	516.5	564	51.2
Mapoly0013s0178	Marchantia polymorpha	HOM04x5M005382	ORTHO04x5M006527	1.4e-138	496.5	646	45.8
Sspon.03G0028620-2C	Saccharum spontaneum	HOM04x5M005382	ORTHO04x5M006527	1.8e-138	496.1	871	38.3
PH01000229G0250	Phyllostachys edulis	HOM04x5M005382	ORTHO04x5M006527	1.0e-133	480.3	656	43.9
LOC_Os01g67920	Oryza sativa ssp. japonica	HOM04x5M005382	ORTHO04x5M006527	2.5e-132	475.7	459	55.3
ASH_gene1600	Apostasia shenzhenica	HOM04x5M005382	ORTHO04x5M006527	9.9e-129	463.8	616	45.3
Misin06G412600	Miscanthus sinensis	HOM04x5M005382	ORTHO04x5M006527	3.8e-128	461.8	499	52.1
Oropetium_20150105_13135	Oropetium thomaeum	HOM04x5M005382	ORTHO04x5M006527	1.9e-119	433.0	434	53.2
Spipo4G0035200	Spirodela polyrhiza	HOM04x5M005382	ORTHO04x5M006527	1.5e-116	423.3	320	66.2
PH01000031G1370	Phyllostachys edulis	HOM04x5M005382	ORTHO04x5M006527	1.4e-111	406.8	648	41.7
Spipo4G0035300	Spirodela polyrhiza	HOM04x5M005382	ORTHO04x5M006527	1.5e-60	237.3	265	54.0
Sspon.03G0028540-1B	Saccharum spontaneum	HOM04x5M000049	ORTHO04x5M006527	3.4e-60	236.1	381	40.9
Sspon.03G0000770-2B	Saccharum spontaneum	HOM04x5M004483	ORTHO04x5M005884	5.4e-50	202.2	157	61.8
PAB00064933	Picea abies	HOM04x5M005382	ORTHO04x5M006527	3.4e-44	183.0	142	67.6
PAB00026557	Picea abies	HOM04x5M005382	ORTHO04x5M006527	1.2e-38	164.5	122	65.6
PAB00034029	Picea abies	HOM04x5M005382	ORTHO04x5M006527	5.4e-34	149.1	89	77.5
Oropetium_20150105_13136	Oropetium thomaeum	HOM04x5M005382	ORTHO04x5M006527	7.3e-31	138.7	144	54.9
PAB00061745	Picea abies	HOM04x5M005382	ORTHO04x5M006527	7.3e-31	138.7	120	61.7
evm.TU.AsparagusV1_05.2410.V1.1	Asparagus officinalis	HOM04x5M005382	ORTHO04x5M006527	4.4e-28	129.4	104	59.6
evm.TU.AsparagusV1_08.1960.V1.1	Asparagus officinalis	HOM04x5M005382	ORTHO04x5M006527	4.2e-26	122.9	104	56.7
p5.00_sc00032_p0014	Elaeis guineensis	HOM04x5M005382	ORTHO04x5M006527	1.3e-22	111.3	82	67.1
Zjn_sc00034.1.g03860.1.sm.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M005382	ORTHO04x5M006527	3.4e-20	103.2	138	43.5
p5.00_sc00032_p0015	Elaeis guineensis	HOM04x5M005382	ORTHO04x5M006527	3.8e-19	99.8	71	67.6
PAB00021146	Picea abies	HOM04x5M005382	ORTHO04x5M146491	2.4e-13	80.5	116	48.3
evm.TU.AsparagusV1_08.2080.V1.1	Asparagus officinalis	HOM04x5M005382	ORTHO04x5M006527	4.0e-13	79.7	72	50.0
Potri.005G177400	Populus trichocarpa	HOM04x5M006331	ORTHO04x5M008093	2.5e-07	60.5	99	38.4

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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