Monocots PLAZA 4.5 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
AT5G63740	Arabidopsis thaliana	HOM04x5M000452	ORTHO04x5M047364	2.5e-70	268.1	227	100.0
AT5G63750	Arabidopsis thaliana	HOM04x5M000452	ORTHO04x5M047871	5.2e-20	100.9	87	55.2
AT5G63760	Arabidopsis thaliana	HOM04x5M000452	ORTHO04x5M045814	8.9e-20	100.1	71	59.2
AT5G63730	Arabidopsis thaliana	HOM04x5M000452	ORTHO04x5M046574	2.2e-18	95.5	83	56.6
AT5G08730	Arabidopsis thaliana	HOM04x5M000452	ORTHO04x5M046804	9.9e-11	70.1	71	45.1
ASH_gene11326	Apostasia shenzhenica	HOM04x5M000452	ORTHO04x5M000849	7.8e-08	60.5	82	40.2
Spipo7G0052600	Spirodela polyrhiza	HOM04x5M000452	ORTHO04x5M000849	1.3e-07	59.7	77	41.6
ASH_gene11606	Apostasia shenzhenica	HOM04x5M000452	ORTHO04x5M000849	3.0e-07	58.5	83	36.1
p5.00_sc00034_p0142	Elaeis guineensis	HOM04x5M000452	ORTHO04x5M000849	3.0e-07	58.5	85	37.6
Zm00001d020031	Zea mays B73	HOM04x5M000452	ORTHO04x5M010786	3.0e-07	58.5	82	39.0
PAB00026002	Picea abies	HOM04x5M000452	ORTHO04x5M000849	8.7e-07	57.0	80	35.0
PAB00027190	Picea abies	HOM04x5M000452	ORTHO04x5M000849	8.7e-07	57.0	80	35.0
Pp3c20_6730	Physcomitrium patens	HOM04x5M000452	ORTHO04x5M000849	8.7e-07	57.0	80	36.2
Zm00007a00008652	Zea mays B104	HOM04x5M000452	ORTHO04x5M000849	8.7e-07	57.0	82	39.0
Zm00008a038164	Zea mays PH207	HOM04x5M000452	ORTHO04x5M000849	8.7e-07	57.0	82	39.0
PEQU_22388	Phalaenopsis equestris	HOM04x5M000452	ORTHO04x5M000849	1.1e-06	56.6	76	34.2
Zm00001d003207	Zea mays B73	HOM04x5M000452	ORTHO04x5M000849	1.1e-06	56.6	82	37.8
Zm00007a00010934	Zea mays B104	HOM04x5M000452	ORTHO04x5M000849	1.1e-06	56.6	82	37.8
Zm00008a007013	Zea mays PH207	HOM04x5M000452	ORTHO04x5M000849	1.1e-06	56.6	82	37.8
Aco003462	Ananas comosus	HOM04x5M000452	ORTHO04x5M000849	1.5e-06	56.2	77	37.7
Zm00008a036872	Zea mays PH207	HOM04x5M000452	ORTHO04x5M000849	1.5e-06	56.2	82	39.0
Oropetium_20150105_11970	Oropetium thomaeum	HOM04x5M000452	ORTHO04x5M000849	2.5e-06	55.5	82	35.4
Seita.7G148700	Setaria italica	HOM04x5M000452	ORTHO04x5M000849	2.5e-06	55.5	82	36.6
Zm00007a00035621	Zea mays B104	HOM04x5M000452	ORTHO04x5M000849	2.5e-06	55.5	82	37.8
Zm00008a008279	Zea mays PH207	HOM04x5M000452	ORTHO04x5M000849	2.5e-06	55.5	82	37.8
Misin12G131900	Miscanthus sinensis	HOM04x5M000452	ORTHO04x5M000849	3.3e-06	55.1	82	37.8
PEQU_05316	Phalaenopsis equestris	HOM04x5M000452	ORTHO04x5M000849	3.3e-06	55.1	77	36.4
Sobic.006G131000	Sorghum bicolor	HOM04x5M000452	ORTHO04x5M000849	3.3e-06	55.1	82	37.8
Misin11G125400	Miscanthus sinensis	HOM04x5M000452	ORTHO04x5M000849	4.3e-06	54.7	82	36.6
Sspon.05G0024890-1B	Saccharum spontaneum	HOM04x5M000452	ORTHO04x5M000849	4.3e-06	54.7	82	37.8
Sspon.05G0024890-2D	Saccharum spontaneum	HOM04x5M000452	ORTHO04x5M000849	4.3e-06	54.7	82	37.8
Bradi5g14350	Brachypodium distachyon	HOM04x5M000452	ORTHO04x5M000849	5.6e-06	54.3	82	36.6
Solyc06g073340.2	Solanum lycopersicum	HOM04x5M000452	ORTHO04x5M000849	9.6e-06	53.5	77	35.1

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment